data_7MBU
#
_model_server_result.job_id            48Gbr2DZOhOGO9u_MXEUDA 
_model_server_result.datetime_utc      '2025-07-19 20:33:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1503}' 
#
_entry.id    7MBU 
#
_exptl.entry_id    7MBU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              414.621 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (25R)-14beta,17beta-spirost-5-en-3beta-ol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MBU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
? 5 P N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 921 A ASN 921 1_555 E C1 NAG . A NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 B ND2 ASN 921 B ASN 921 1_555 J C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 C ND2 ASN 921 C ASN 921 1_555 N C1 NAG . C NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 D ND2 ASN 921 D ASN 921 1_555 R C1 NAG . D NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
metalc ? metalc1 A OE1 GLU 768 A GLU 768 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc2 A OE2 GLU 768 A GLU 768 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc3 A OE1 GLN 771 A GLN 771 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? 
metalc ? metalc4 A OD1 ASN 794 A ASN 794 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc5 A OD2 ASP 797 A ASP 797 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc6 B OE1 GLU 768 B GLU 768 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc7 B OE2 GLU 768 B GLU 768 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc8 B OE1 GLN 771 B GLN 771 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? 
metalc ? metalc9 B OD1 ASN 794 B ASN 794 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc10 B OD2 ASP 797 B ASP 797 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc11 C OE1 GLU 768 C GLU 768 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc12 C OE2 GLU 768 C GLU 768 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc13 C OE1 GLN 771 C GLN 771 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? 
metalc ? metalc14 C OD1 ASN 794 C ASN 794 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc15 C OD2 ASP 797 C ASP 797 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc16 D OE1 GLU 768 D GLU 768 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc17 D OE2 GLU 768 D GLU 768 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc18 D OE1 GLN 771 D GLN 771 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? 
metalc ? metalc19 D OD1 ASN 794 D ASN 794 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc20 D OD2 ASP 797 D ASP 797 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
#
_chem_comp.formula           'C27 H42 O3' 
_chem_comp.formula_weight    414.621 
_chem_comp.id                YUV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (25R)-14beta,17beta-spirost-5-en-3beta-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 YUV sing 404 n n 
C1 C2 YUV sing 405 n n 
C1 C26 YUV sing 406 n n 
C2 C3 YUV sing 407 n n 
C26 O2 YUV sing 408 n n 
C3 C4 YUV sing 409 n n 
O2 C4 YUV sing 410 n n 
C4 C5 YUV sing 411 n n 
C4 O YUV sing 412 n n 
C25 C5 YUV sing 413 n n 
C5 C6 YUV sing 414 n n 
O C7 YUV sing 415 n n 
C7 C6 YUV sing 416 n n 
C7 C8 YUV sing 417 n n 
C6 C10 YUV sing 418 n n 
C24 C10 YUV sing 419 n n 
C8 C9 YUV sing 420 n n 
C10 C11 YUV sing 421 n n 
C10 C9 YUV sing 422 n n 
C11 C12 YUV sing 423 n n 
C9 C14 YUV sing 424 n n 
C12 C13 YUV sing 425 n n 
C14 C13 YUV sing 426 n n 
C14 C15 YUV sing 427 n n 
C13 C18 YUV sing 428 n n 
C15 C16 YUV sing 429 n n 
C23 C18 YUV sing 430 n n 
C18 C17 YUV sing 431 n n 
C18 C19 YUV sing 432 n n 
C16 C17 YUV doub 433 n n 
C17 C22 YUV sing 434 n n 
C19 C20 YUV sing 435 n n 
C22 C21 YUV sing 436 n n 
C20 C21 YUV sing 437 n n 
C21 O1 YUV sing 438 n n 
C1 H1 YUV sing 439 n n 
C2 H2 YUV sing 440 n n 
C2 H3 YUV sing 441 n n 
O1 H4 YUV sing 442 n n 
C H5 YUV sing 443 n n 
C H6 YUV sing 444 n n 
C H7 YUV sing 445 n n 
C3 H8 YUV sing 446 n n 
C3 H9 YUV sing 447 n n 
C5 H10 YUV sing 448 n n 
C6 H11 YUV sing 449 n n 
C7 H12 YUV sing 450 n n 
C8 H13 YUV sing 451 n n 
C8 H14 YUV sing 452 n n 
C9 H15 YUV sing 453 n n 
C11 H16 YUV sing 454 n n 
C11 H17 YUV sing 455 n n 
C12 H18 YUV sing 456 n n 
C12 H19 YUV sing 457 n n 
C13 H20 YUV sing 458 n n 
C14 H21 YUV sing 459 n n 
C15 H22 YUV sing 460 n n 
C15 H23 YUV sing 461 n n 
C16 H24 YUV sing 462 n n 
C19 H25 YUV sing 463 n n 
C19 H26 YUV sing 464 n n 
C20 H27 YUV sing 465 n n 
C20 H28 YUV sing 466 n n 
C21 H29 YUV sing 467 n n 
C22 H30 YUV sing 468 n n 
C22 H31 YUV sing 469 n n 
C23 H32 YUV sing 470 n n 
C23 H33 YUV sing 471 n n 
C23 H34 YUV sing 472 n n 
C24 H35 YUV sing 473 n n 
C24 H36 YUV sing 474 n n 
C24 H37 YUV sing 475 n n 
C25 H38 YUV sing 476 n n 
C25 H39 YUV sing 477 n n 
C25 H40 YUV sing 478 n n 
C26 H41 YUV sing 479 n n 
C26 H42 YUV sing 480 n n 
#
_atom_sites.entry_id                     7MBU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 1501 1501 NAG NAG . 
F 3 CA A 1 1502 2001 CA CA . 
G 4 YUY A 1 1503 3001 YUY GDP . 
H 5 YUV A 1 1504 3002 YUV DIO . 
I 4 YUY A 1 1505 3001 YUY GDP . 
J 2 NAG B 1 1501 1501 NAG NAG . 
K 3 CA B 1 1502 2001 CA CA . 
L 5 YUV B 1 1503 3002 YUV DIO . 
M 4 YUY B 1 1504 3001 YUY GDP . 
N 2 NAG C 1 1501 1501 NAG NAG . 
O 3 CA C 1 1502 2001 CA CA . 
P 5 YUV C 1 1503 3002 YUV DIO . 
Q 4 YUY C 1 1504 3001 YUY GDP . 
R 2 NAG D 1 1501 1501 NAG NAG . 
S 3 CA D 1 1502 2001 CA CA . 
T 5 YUV D 1 1503 3002 YUV DIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YUV . . . T 5 173.347 150.907 179.975 1 20 ? C1 YUV 1503 D 1 
HETATM 2 C C2 YUV . . . T 5 174.289 149.79 180.39 1 20 ? C2 YUV 1503 D 1 
HETATM 3 O O1 YUV . . . T 5 177.473 150.821 194.333 1 20 ? O1 YUV 1503 D 1 
HETATM 4 C C YUV . . . T 5 172.088 150.37 179.305 1 20 ? C YUV 1503 D 1 
HETATM 5 O O YUV . . . T 5 174.414 150.463 183.307 1 20 ? O YUV 1503 D 1 
HETATM 6 O O2 YUV . . . T 5 174.176 152.246 181.836 1 20 ? O2 YUV 1503 D 1 
HETATM 7 C C3 YUV . . . T 5 175.483 150.324 181.183 1 20 ? C3 YUV 1503 D 1 
HETATM 8 C C4 YUV . . . T 5 175.056 151.241 182.311 1 20 ? C4 YUV 1503 D 1 
HETATM 9 C C5 YUV . . . T 5 176.197 151.946 183.052 1 20 ? C5 YUV 1503 D 1 
HETATM 10 C C6 YUV . . . T 5 175.66 152.083 184.491 1 20 ? C6 YUV 1503 D 1 
HETATM 11 C C7 YUV . . . T 5 174.352 151.262 184.493 1 20 ? C7 YUV 1503 D 1 
HETATM 12 C C8 YUV . . . T 5 174.331 150.423 185.768 1 20 ? C8 YUV 1503 D 1 
HETATM 13 C C9 YUV . . . T 5 175.328 151.17 186.657 1 20 ? C9 YUV 1503 D 1 
HETATM 14 C C10 YUV . . . T 5 176.475 151.521 185.692 1 20 ? C10 YUV 1503 D 1 
HETATM 15 C C11 YUV . . . T 5 177.369 152.54 186.41 1 20 ? C11 YUV 1503 D 1 
HETATM 16 C C12 YUV . . . T 5 177.87 152.014 187.754 1 20 ? C12 YUV 1503 D 1 
HETATM 17 C C13 YUV . . . T 5 176.75 151.53 188.685 1 20 ? C13 YUV 1503 D 1 
HETATM 18 C C14 YUV . . . T 5 175.787 150.56 187.987 1 20 ? C14 YUV 1503 D 1 
HETATM 19 C C15 YUV . . . T 5 174.589 150.284 188.889 1 20 ? C15 YUV 1503 D 1 
HETATM 20 C C16 YUV . . . T 5 174.974 150.07 190.318 1 20 ? C16 YUV 1503 D 1 
HETATM 21 C C17 YUV . . . T 5 176.155 150.359 190.84 1 20 ? C17 YUV 1503 D 1 
HETATM 22 C C18 YUV . . . T 5 177.294 150.974 190.034 1 20 ? C18 YUV 1503 D 1 
HETATM 23 C C19 YUV . . . T 5 177.901 152.136 190.837 1 20 ? C19 YUV 1503 D 1 
HETATM 24 C C20 YUV . . . T 5 178.296 151.716 192.251 1 20 ? C20 YUV 1503 D 1 
HETATM 25 C C21 YUV . . . T 5 177.089 151.22 193.015 1 20 ? C21 YUV 1503 D 1 
HETATM 26 C C22 YUV . . . T 5 176.453 150.049 192.29 1 20 ? C22 YUV 1503 D 1 
HETATM 27 C C23 YUV . . . T 5 178.366 149.892 189.812 1 20 ? C23 YUV 1503 D 1 
HETATM 28 C C24 YUV . . . T 5 177.285 150.277 185.297 1 20 ? C24 YUV 1503 D 1 
HETATM 29 C C25 YUV . . . T 5 176.657 153.258 182.423 1 20 ? C25 YUV 1503 D 1 
HETATM 30 C C26 YUV . . . T 5 173.005 151.733 181.189 1 20 ? C26 YUV 1503 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#