data_7MBV # _model_server_result.job_id qqkedrHirRzBqryDVLOKdA _model_server_result.datetime_utc '2025-07-21 08:00:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1504}' # _entry.id 7MBV # _exptl.entry_id 7MBV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.395 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N'-[(E)-(3,4-dimethoxyphenyl)methylidene]-2-(naphthalen-1-yl)acetohydrazide" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MBV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 N N N ? 4 T N N ? 4 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 921 A ASN 921 1_555 E C1 NAG . A NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 B ND2 ASN 921 B ASN 921 1_555 K C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 C ND2 ASN 921 C ASN 921 1_555 Q C1 NAG . C NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 D ND2 ASN 921 D ASN 921 1_555 X C1 NAG . D NAG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 A OE1 GLU 212 A GLU 212 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A O ASP 333 A ASP 333 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 A OE1 GLU 337 A GLU 337 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc4 A OE2 GLU 337 A GLU 337 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A OE2 GLU 768 A GLU 768 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc6 A OD1 ASN 794 A ASN 794 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc7 A OD2 ASP 797 A ASP 797 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc8 B OE1 GLU 212 B GLU 212 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc9 B O ASP 333 B ASP 333 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc10 B OE1 GLU 337 B GLU 337 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc11 B OE2 GLU 337 B GLU 337 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc12 B OE2 GLU 768 B GLU 768 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc13 B OD1 ASN 794 B ASN 794 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc14 B OD2 ASP 797 B ASP 797 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc15 C OE1 GLU 212 C GLU 212 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc16 C O ASP 333 C ASP 333 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc17 C OE1 GLU 337 C GLU 337 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc18 C OE2 GLU 337 C GLU 337 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc19 C OE2 GLU 768 C GLU 768 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc20 C OD1 ASN 794 C ASN 794 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc21 C OD2 ASP 797 C ASP 797 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc22 D OE1 GLU 212 D GLU 212 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc23 D O ASP 333 D ASP 333 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc24 D OE1 GLU 337 D GLU 337 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc25 D OE2 GLU 337 D GLU 337 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc26 D OE2 GLU 768 D GLU 768 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc27 D OD1 ASN 794 D ASN 794 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc28 D OD2 ASP 797 D ASP 797 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? # _chem_comp.formula 'C21 H20 N2 O3' _chem_comp.formula_weight 348.395 _chem_comp.id YUS _chem_comp.mon_nstd_flag . _chem_comp.name "N'-[(E)-(3,4-dimethoxyphenyl)methylidene]-2-(naphthalen-1-yl)acetohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C YUS doub 404 n n N C YUS sing 405 n n N N1 YUS sing 406 n n C C10 YUS sing 407 n n C1 N1 YUS doub 408 e n C1 C2 YUS sing 409 n n C3 C2 YUS doub 410 n y C3 C4 YUS sing 411 n y C10 C11 YUS sing 412 n n C2 C9 YUS sing 413 n y C20 C11 YUS doub 414 n y C20 C19 YUS sing 415 n y C4 C5 YUS doub 416 n y C11 C12 YUS sing 417 n y C19 C18 YUS doub 418 n y C9 C7 YUS doub 419 n y C5 C7 YUS sing 420 n y C5 O1 YUS sing 421 n n C12 C13 YUS doub 422 n y C12 C17 YUS sing 423 n y C7 O2 YUS sing 424 n n C18 C17 YUS sing 425 n y C6 O1 YUS sing 426 n n C13 C14 YUS sing 427 n y C17 C16 YUS doub 428 n y O2 C8 YUS sing 429 n n C14 C15 YUS doub 430 n y C16 C15 YUS sing 431 n y C1 H1 YUS sing 432 n n C6 H2 YUS sing 433 n n C6 H3 YUS sing 434 n n C6 H4 YUS sing 435 n n C4 H5 YUS sing 436 n n C3 H6 YUS sing 437 n n C8 H7 YUS sing 438 n n C8 H8 YUS sing 439 n n C8 H9 YUS sing 440 n n C9 H10 YUS sing 441 n n C10 H11 YUS sing 442 n n C10 H12 YUS sing 443 n n C13 H13 YUS sing 444 n n C14 H14 YUS sing 445 n n N H15 YUS sing 446 n n C15 H16 YUS sing 447 n n C16 H17 YUS sing 448 n n C18 H18 YUS sing 449 n n C19 H19 YUS sing 450 n n C20 H20 YUS sing 451 n n # _atom_sites.entry_id 7MBV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 1501 1501 NAG NAG . F 3 CA A 1 1502 2001 CA CA . G 3 CA A 1 1503 2002 CA CA . H 4 YUS A 1 1504 2003 YUS 722 . I 5 YUV A 1 1505 3002 YUV DIO . J 6 YUY A 1 1506 3001 YUY GDP . K 2 NAG B 1 1501 1501 NAG NAG . L 3 CA B 1 1502 2001 CA CA . M 3 CA B 1 1503 2002 CA CA . N 4 YUS B 1 1504 2003 YUS 722 . O 5 YUV B 1 1505 3002 YUV DIO . P 6 YUY B 1 1506 3001 YUY GDP . Q 2 NAG C 1 1501 1501 NAG NAG . R 3 CA C 1 1502 2001 CA CA . S 3 CA C 1 1503 2002 CA CA . T 4 YUS C 1 1504 2003 YUS 722 . U 5 YUV C 1 1505 3002 YUV DIO . V 6 YUY C 1 1506 3001 YUY GDP . W 6 YUY D 1 3001 3001 YUY GDP . X 2 NAG D 1 3002 1501 NAG NAG . Y 3 CA D 1 3003 2001 CA CA . Z 3 CA D 1 3004 2002 CA CA . AA 4 YUS D 1 3005 2003 YUS 722 . BA 5 YUV D 1 3006 3002 YUV DIO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 YUS . . . N 4 134.441 161.729 170.268 1 8.66 ? O1 YUS 1504 B 1 HETATM 2 O O2 YUS . . . N 4 132.035 162.421 170.901 1 8.66 ? O2 YUS 1504 B 1 HETATM 3 C C1 YUS . . . N 4 130.571 162.103 166.224 1 8.66 ? C1 YUS 1504 B 1 HETATM 4 C C2 YUS . . . N 4 131.61 162.064 167.252 1 8.66 ? C2 YUS 1504 B 1 HETATM 5 N N1 YUS . . . N 4 129.359 162.385 166.516 1 8.66 ? N1 YUS 1504 B 1 HETATM 6 C C7 YUS . . . N 4 132.255 162.205 169.571 1 8.66 ? C7 YUS 1504 B 1 HETATM 7 C C6 YUS . . . N 4 135.753 161.26 169.977 1 8.66 ? C6 YUS 1504 B 1 HETATM 8 C C5 YUS . . . N 4 133.574 161.865 169.222 1 8.66 ? C5 YUS 1504 B 1 HETATM 9 C C4 YUS . . . N 4 133.904 161.652 167.894 1 8.66 ? C4 YUS 1504 B 1 HETATM 10 C C3 YUS . . . N 4 132.926 161.753 166.923 1 8.66 ? C3 YUS 1504 B 1 HETATM 11 C C8 YUS . . . N 4 130.713 162.767 171.299 1 8.66 ? C8 YUS 1504 B 1 HETATM 12 C C9 YUS . . . N 4 131.287 162.301 168.591 1 8.66 ? C9 YUS 1504 B 1 HETATM 13 C C10 YUS . . . N 4 126.771 162.949 167.119 1 8.66 ? C10 YUS 1504 B 1 HETATM 14 C C11 YUS . . . N 4 126.744 161.79 168.095 1 8.66 ? C11 YUS 1504 B 1 HETATM 15 C C12 YUS . . . N 4 126.917 162.003 169.496 1 8.66 ? C12 YUS 1504 B 1 HETATM 16 C C13 YUS . . . N 4 127.111 163.287 170.063 1 8.66 ? C13 YUS 1504 B 1 HETATM 17 C C14 YUS . . . N 4 127.269 163.447 171.409 1 8.66 ? C14 YUS 1504 B 1 HETATM 18 N N YUS . . . N 4 128.435 162.195 165.514 1 8.66 ? N YUS 1504 B 1 HETATM 19 C C YUS . . . N 4 127.133 162.449 165.735 1 8.66 ? C YUS 1504 B 1 HETATM 20 O O YUS . . . N 4 126.286 162.288 164.861 1 8.66 ? O YUS 1504 B 1 HETATM 21 C C15 YUS . . . N 4 127.246 162.355 172.256 1 8.66 ? C15 YUS 1504 B 1 HETATM 22 C C16 YUS . . . N 4 127.064 161.097 171.762 1 8.66 ? C16 YUS 1504 B 1 HETATM 23 C C17 YUS . . . N 4 126.893 160.882 170.373 1 8.66 ? C17 YUS 1504 B 1 HETATM 24 C C18 YUS . . . N 4 126.695 159.591 169.83 1 8.66 ? C18 YUS 1504 B 1 HETATM 25 C C19 YUS . . . N 4 126.53 159.424 168.488 1 8.66 ? C19 YUS 1504 B 1 HETATM 26 C C20 YUS . . . N 4 126.555 160.513 167.632 1 8.66 ? C20 YUS 1504 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 571 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #