data_7MBV
#
_model_server_result.job_id            XpEkYkrJIl7F4jYZs7sWGA 
_model_server_result.datetime_utc      '2025-07-19 16:51:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1505}' 
#
_entry.id    7MBV 
#
_exptl.entry_id    7MBV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              414.621 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (25R)-14beta,17beta-spirost-5-en-3beta-ol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MBV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 O N N 
? 5 U N N 
? 5 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 921 A ASN 921 1_555 E C1 NAG . A NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 B ND2 ASN 921 B ASN 921 1_555 K C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale3 C ND2 ASN 921 C ASN 921 1_555 Q C1 NAG . C NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale4 D ND2 ASN 921 D ASN 921 1_555 X C1 NAG . D NAG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
metalc ? metalc1 A OE1 GLU 212 A GLU 212 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc2 A O ASP 333 A ASP 333 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc3 A OE1 GLU 337 A GLU 337 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc4 A OE2 GLU 337 A GLU 337 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc5 A OE2 GLU 768 A GLU 768 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc6 A OD1 ASN 794 A ASN 794 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc7 A OD2 ASP 797 A ASP 797 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc8 B OE1 GLU 212 B GLU 212 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc9 B O ASP 333 B ASP 333 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc10 B OE1 GLU 337 B GLU 337 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc11 B OE2 GLU 337 B GLU 337 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc12 B OE2 GLU 768 B GLU 768 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc13 B OD1 ASN 794 B ASN 794 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc14 B OD2 ASP 797 B ASP 797 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc15 C OE1 GLU 212 C GLU 212 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc16 C O ASP 333 C ASP 333 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc17 C OE1 GLU 337 C GLU 337 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc18 C OE2 GLU 337 C GLU 337 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc19 C OE2 GLU 768 C GLU 768 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc20 C OD1 ASN 794 C ASN 794 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc21 C OD2 ASP 797 C ASP 797 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc22 D OE1 GLU 212 D GLU 212 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc23 D O ASP 333 D ASP 333 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc24 D OE1 GLU 337 D GLU 337 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc25 D OE2 GLU 337 D GLU 337 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc26 D OE2 GLU 768 D GLU 768 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc27 D OD1 ASN 794 D ASN 794 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc28 D OD2 ASP 797 D ASP 797 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
#
_chem_comp.formula           'C27 H42 O3' 
_chem_comp.formula_weight    414.621 
_chem_comp.id                YUV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (25R)-14beta,17beta-spirost-5-en-3beta-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 YUV sing 452 n n 
C1 C2 YUV sing 453 n n 
C1 C26 YUV sing 454 n n 
C2 C3 YUV sing 455 n n 
C26 O2 YUV sing 456 n n 
C3 C4 YUV sing 457 n n 
O2 C4 YUV sing 458 n n 
C4 C5 YUV sing 459 n n 
C4 O YUV sing 460 n n 
C25 C5 YUV sing 461 n n 
C5 C6 YUV sing 462 n n 
O C7 YUV sing 463 n n 
C7 C6 YUV sing 464 n n 
C7 C8 YUV sing 465 n n 
C6 C10 YUV sing 466 n n 
C24 C10 YUV sing 467 n n 
C8 C9 YUV sing 468 n n 
C10 C11 YUV sing 469 n n 
C10 C9 YUV sing 470 n n 
C11 C12 YUV sing 471 n n 
C9 C14 YUV sing 472 n n 
C12 C13 YUV sing 473 n n 
C14 C13 YUV sing 474 n n 
C14 C15 YUV sing 475 n n 
C13 C18 YUV sing 476 n n 
C15 C16 YUV sing 477 n n 
C23 C18 YUV sing 478 n n 
C18 C17 YUV sing 479 n n 
C18 C19 YUV sing 480 n n 
C16 C17 YUV doub 481 n n 
C17 C22 YUV sing 482 n n 
C19 C20 YUV sing 483 n n 
C22 C21 YUV sing 484 n n 
C20 C21 YUV sing 485 n n 
C21 O1 YUV sing 486 n n 
C1 H1 YUV sing 487 n n 
C2 H2 YUV sing 488 n n 
C2 H3 YUV sing 489 n n 
O1 H4 YUV sing 490 n n 
C H5 YUV sing 491 n n 
C H6 YUV sing 492 n n 
C H7 YUV sing 493 n n 
C3 H8 YUV sing 494 n n 
C3 H9 YUV sing 495 n n 
C5 H10 YUV sing 496 n n 
C6 H11 YUV sing 497 n n 
C7 H12 YUV sing 498 n n 
C8 H13 YUV sing 499 n n 
C8 H14 YUV sing 500 n n 
C9 H15 YUV sing 501 n n 
C11 H16 YUV sing 502 n n 
C11 H17 YUV sing 503 n n 
C12 H18 YUV sing 504 n n 
C12 H19 YUV sing 505 n n 
C13 H20 YUV sing 506 n n 
C14 H21 YUV sing 507 n n 
C15 H22 YUV sing 508 n n 
C15 H23 YUV sing 509 n n 
C16 H24 YUV sing 510 n n 
C19 H25 YUV sing 511 n n 
C19 H26 YUV sing 512 n n 
C20 H27 YUV sing 513 n n 
C20 H28 YUV sing 514 n n 
C21 H29 YUV sing 515 n n 
C22 H30 YUV sing 516 n n 
C22 H31 YUV sing 517 n n 
C23 H32 YUV sing 518 n n 
C23 H33 YUV sing 519 n n 
C23 H34 YUV sing 520 n n 
C24 H35 YUV sing 521 n n 
C24 H36 YUV sing 522 n n 
C24 H37 YUV sing 523 n n 
C25 H38 YUV sing 524 n n 
C25 H39 YUV sing 525 n n 
C25 H40 YUV sing 526 n n 
C26 H41 YUV sing 527 n n 
C26 H42 YUV sing 528 n n 
#
_atom_sites.entry_id                     7MBV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 1501 1501 NAG NAG . 
F 3 CA A 1 1502 2001 CA CA . 
G 3 CA A 1 1503 2002 CA CA . 
H 4 YUS A 1 1504 2003 YUS 722 . 
I 5 YUV A 1 1505 3002 YUV DIO . 
J 6 YUY A 1 1506 3001 YUY GDP . 
K 2 NAG B 1 1501 1501 NAG NAG . 
L 3 CA B 1 1502 2001 CA CA . 
M 3 CA B 1 1503 2002 CA CA . 
N 4 YUS B 1 1504 2003 YUS 722 . 
O 5 YUV B 1 1505 3002 YUV DIO . 
P 6 YUY B 1 1506 3001 YUY GDP . 
Q 2 NAG C 1 1501 1501 NAG NAG . 
R 3 CA C 1 1502 2001 CA CA . 
S 3 CA C 1 1503 2002 CA CA . 
T 4 YUS C 1 1504 2003 YUS 722 . 
U 5 YUV C 1 1505 3002 YUV DIO . 
V 6 YUY C 1 1506 3001 YUY GDP . 
W 6 YUY D 1 3001 3001 YUY GDP . 
X 2 NAG D 1 3002 1501 NAG NAG . 
Y 3 CA D 1 3003 2001 CA CA . 
Z 3 CA D 1 3004 2002 CA CA . 
AA 4 YUS D 1 3005 2003 YUS 722 . 
BA 5 YUV D 1 3006 3002 YUV DIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YUV . . . I 5 146.255 173.817 180.54 1 23.35 ? C1 YUV 1505 A 1 
HETATM 2 C C2 YUV . . . I 5 147.31 174.796 181.024 1 23.35 ? C2 YUV 1505 A 1 
HETATM 3 O O1 YUV . . . I 5 146.137 177.285 195.061 1 23.35 ? O1 YUV 1505 A 1 
HETATM 4 C C YUV . . . I 5 146.872 172.625 179.818 1 23.35 ? C YUV 1505 A 1 
HETATM 5 O O YUV . . . I 5 146.6 174.744 183.922 1 23.35 ? O YUV 1505 A 1 
HETATM 6 O O2 YUV . . . I 5 144.844 174.474 182.418 1 23.35 ? O2 YUV 1505 A 1 
HETATM 7 C C3 YUV . . . I 5 146.693 175.922 181.852 1 23.35 ? C3 YUV 1505 A 1 
HETATM 8 C C4 YUV . . . I 5 145.792 175.388 182.947 1 23.35 ? C4 YUV 1505 A 1 
HETATM 9 C C5 YUV . . . I 5 145.013 176.45 183.734 1 23.35 ? C5 YUV 1505 A 1 
HETATM 10 C C6 YUV . . . I 5 144.925 175.856 185.155 1 23.35 ? C6 YUV 1505 A 1 
HETATM 11 C C7 YUV . . . I 5 145.795 174.583 185.094 1 23.35 ? C7 YUV 1505 A 1 
HETATM 12 C C8 YUV . . . I 5 146.629 174.524 186.373 1 23.35 ? C8 YUV 1505 A 1 
HETATM 13 C C9 YUV . . . I 5 145.868 175.476 187.299 1 23.35 ? C9 YUV 1505 A 1 
HETATM 14 C C10 YUV . . . I 5 145.48 176.646 186.374 1 23.35 ? C10 YUV 1505 A 1 
HETATM 15 C C11 YUV . . . I 5 144.451 177.491 187.134 1 23.35 ? C11 YUV 1505 A 1 
HETATM 16 C C12 YUV . . . I 5 144.986 177.964 188.485 1 23.35 ? C12 YUV 1505 A 1 
HETATM 17 C C13 YUV . . . I 5 145.49 176.822 189.377 1 23.35 ? C13 YUV 1505 A 1 
HETATM 18 C C14 YUV . . . I 5 146.476 175.902 188.641 1 23.35 ? C14 YUV 1505 A 1 
HETATM 19 C C15 YUV . . . I 5 146.778 174.678 189.499 1 23.35 ? C15 YUV 1505 A 1 
HETATM 20 C C16 YUV . . . I 5 146.985 175.013 190.942 1 23.35 ? C16 YUV 1505 A 1 
HETATM 21 C C17 YUV . . . I 5 146.672 176.167 191.51 1 23.35 ? C17 YUV 1505 A 1 
HETATM 22 C C18 YUV . . . I 5 146.034 177.323 190.747 1 23.35 ? C18 YUV 1505 A 1 
HETATM 23 C C19 YUV . . . I 5 144.86 177.877 191.571 1 23.35 ? C19 YUV 1505 A 1 
HETATM 24 C C20 YUV . . . I 5 145.254 178.206 193.011 1 23.35 ? C20 YUV 1505 A 1 
HETATM 25 C C21 YUV . . . I 5 145.77 176.972 193.715 1 23.35 ? C21 YUV 1505 A 1 
HETATM 26 C C22 YUV . . . I 5 146.967 176.409 192.972 1 23.35 ? C22 YUV 1505 A 1 
HETATM 27 C C23 YUV . . . I 5 147.096 178.425 190.569 1 23.35 ? C23 YUV 1505 A 1 
HETATM 28 C C24 YUV . . . I 5 146.702 177.499 185.992 1 23.35 ? C24 YUV 1505 A 1 
HETATM 29 C C25 YUV . . . I 5 143.667 176.839 183.129 1 23.35 ? C25 YUV 1505 A 1 
HETATM 30 C C26 YUV . . . I 5 145.43 173.368 181.72 1 23.35 ? C26 YUV 1505 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#