data_7MBV
#
_model_server_result.job_id            62dDdSVS7UOS8ggZ4vlUtg 
_model_server_result.datetime_utc      '2025-07-19 17:21:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":3005}' 
#
_entry.id    7MBV 
#
_exptl.entry_id    7MBV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              348.395 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N'-[(E)-(3,4-dimethoxyphenyl)methylidene]-2-(naphthalen-1-yl)acetohydrazide" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MBV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 N N N 
? 4 T N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 921 A ASN 921 1_555 E C1 NAG . A NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 B ND2 ASN 921 B ASN 921 1_555 K C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale3 C ND2 ASN 921 C ASN 921 1_555 Q C1 NAG . C NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale4 D ND2 ASN 921 D ASN 921 1_555 X C1 NAG . D NAG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
metalc ? metalc1 A OE1 GLU 212 A GLU 212 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc2 A O ASP 333 A ASP 333 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc3 A OE1 GLU 337 A GLU 337 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc4 A OE2 GLU 337 A GLU 337 1_555 G CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc5 A OE2 GLU 768 A GLU 768 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc6 A OD1 ASN 794 A ASN 794 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc7 A OD2 ASP 797 A ASP 797 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc8 B OE1 GLU 212 B GLU 212 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc9 B O ASP 333 B ASP 333 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc10 B OE1 GLU 337 B GLU 337 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc11 B OE2 GLU 337 B GLU 337 1_555 M CA CA . B CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc12 B OE2 GLU 768 B GLU 768 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc13 B OD1 ASN 794 B ASN 794 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc14 B OD2 ASP 797 B ASP 797 1_555 L CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc15 C OE1 GLU 212 C GLU 212 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc16 C O ASP 333 C ASP 333 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc17 C OE1 GLU 337 C GLU 337 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc18 C OE2 GLU 337 C GLU 337 1_555 S CA CA . C CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc19 C OE2 GLU 768 C GLU 768 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc20 C OD1 ASN 794 C ASN 794 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc21 C OD2 ASP 797 C ASP 797 1_555 R CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc22 D OE1 GLU 212 D GLU 212 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc23 D O ASP 333 D ASP 333 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc24 D OE1 GLU 337 D GLU 337 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc25 D OE2 GLU 337 D GLU 337 1_555 Z CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc26 D OE2 GLU 768 D GLU 768 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc27 D OD1 ASN 794 D ASN 794 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc28 D OD2 ASP 797 D ASP 797 1_555 Y CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
#
_chem_comp.formula           'C21 H20 N2 O3' 
_chem_comp.formula_weight    348.395 
_chem_comp.id                YUS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N'-[(E)-(3,4-dimethoxyphenyl)methylidene]-2-(naphthalen-1-yl)acetohydrazide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C YUS doub 404 n n 
N C YUS sing 405 n n 
N N1 YUS sing 406 n n 
C C10 YUS sing 407 n n 
C1 N1 YUS doub 408 e n 
C1 C2 YUS sing 409 n n 
C3 C2 YUS doub 410 n y 
C3 C4 YUS sing 411 n y 
C10 C11 YUS sing 412 n n 
C2 C9 YUS sing 413 n y 
C20 C11 YUS doub 414 n y 
C20 C19 YUS sing 415 n y 
C4 C5 YUS doub 416 n y 
C11 C12 YUS sing 417 n y 
C19 C18 YUS doub 418 n y 
C9 C7 YUS doub 419 n y 
C5 C7 YUS sing 420 n y 
C5 O1 YUS sing 421 n n 
C12 C13 YUS doub 422 n y 
C12 C17 YUS sing 423 n y 
C7 O2 YUS sing 424 n n 
C18 C17 YUS sing 425 n y 
C6 O1 YUS sing 426 n n 
C13 C14 YUS sing 427 n y 
C17 C16 YUS doub 428 n y 
O2 C8 YUS sing 429 n n 
C14 C15 YUS doub 430 n y 
C16 C15 YUS sing 431 n y 
C1 H1 YUS sing 432 n n 
C6 H2 YUS sing 433 n n 
C6 H3 YUS sing 434 n n 
C6 H4 YUS sing 435 n n 
C4 H5 YUS sing 436 n n 
C3 H6 YUS sing 437 n n 
C8 H7 YUS sing 438 n n 
C8 H8 YUS sing 439 n n 
C8 H9 YUS sing 440 n n 
C9 H10 YUS sing 441 n n 
C10 H11 YUS sing 442 n n 
C10 H12 YUS sing 443 n n 
C13 H13 YUS sing 444 n n 
C14 H14 YUS sing 445 n n 
N H15 YUS sing 446 n n 
C15 H16 YUS sing 447 n n 
C16 H17 YUS sing 448 n n 
C18 H18 YUS sing 449 n n 
C19 H19 YUS sing 450 n n 
C20 H20 YUS sing 451 n n 
#
_atom_sites.entry_id                     7MBV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 1501 1501 NAG NAG . 
F 3 CA A 1 1502 2001 CA CA . 
G 3 CA A 1 1503 2002 CA CA . 
H 4 YUS A 1 1504 2003 YUS 722 . 
I 5 YUV A 1 1505 3002 YUV DIO . 
J 6 YUY A 1 1506 3001 YUY GDP . 
K 2 NAG B 1 1501 1501 NAG NAG . 
L 3 CA B 1 1502 2001 CA CA . 
M 3 CA B 1 1503 2002 CA CA . 
N 4 YUS B 1 1504 2003 YUS 722 . 
O 5 YUV B 1 1505 3002 YUV DIO . 
P 6 YUY B 1 1506 3001 YUY GDP . 
Q 2 NAG C 1 1501 1501 NAG NAG . 
R 3 CA C 1 1502 2001 CA CA . 
S 3 CA C 1 1503 2002 CA CA . 
T 4 YUS C 1 1504 2003 YUS 722 . 
U 5 YUV C 1 1505 3002 YUV DIO . 
V 6 YUY C 1 1506 3001 YUY GDP . 
W 6 YUY D 1 3001 3001 YUY GDP . 
X 2 NAG D 1 3002 1501 NAG NAG . 
Y 3 CA D 1 3003 2001 CA CA . 
Z 3 CA D 1 3004 2002 CA CA . 
AA 4 YUS D 1 3005 2003 YUS 722 . 
BA 5 YUV D 1 3006 3002 YUV DIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 YUS . . . AA 4 162.924 135.637 170.262 1 8.66 ? O1 YUS 3005 D 1 
HETATM 2 O O2 YUS . . . AA 4 165.33 134.945 170.894 1 8.66 ? O2 YUS 3005 D 1 
HETATM 3 C C1 YUS . . . AA 4 166.794 135.264 166.217 1 8.66 ? C1 YUS 3005 D 1 
HETATM 4 C C2 YUS . . . AA 4 165.756 135.302 167.245 1 8.66 ? C2 YUS 3005 D 1 
HETATM 5 N N1 YUS . . . AA 4 168.006 134.982 166.509 1 8.66 ? N1 YUS 3005 D 1 
HETATM 6 C C7 YUS . . . AA 4 165.11 135.161 169.564 1 8.66 ? C7 YUS 3005 D 1 
HETATM 7 C C6 YUS . . . AA 4 161.612 136.106 169.971 1 8.66 ? C6 YUS 3005 D 1 
HETATM 8 C C5 YUS . . . AA 4 163.791 135.501 169.216 1 8.66 ? C5 YUS 3005 D 1 
HETATM 9 C C4 YUS . . . AA 4 163.462 135.714 167.888 1 8.66 ? C4 YUS 3005 D 1 
HETATM 10 C C3 YUS . . . AA 4 164.439 135.613 166.916 1 8.66 ? C3 YUS 3005 D 1 
HETATM 11 C C8 YUS . . . AA 4 166.652 134.599 171.292 1 8.66 ? C8 YUS 3005 D 1 
HETATM 12 C C9 YUS . . . AA 4 166.079 135.065 168.584 1 8.66 ? C9 YUS 3005 D 1 
HETATM 13 C C10 YUS . . . AA 4 170.595 134.417 167.112 1 8.66 ? C10 YUS 3005 D 1 
HETATM 14 C C11 YUS . . . AA 4 170.622 135.576 168.088 1 8.66 ? C11 YUS 3005 D 1 
HETATM 15 C C12 YUS . . . AA 4 170.448 135.363 169.489 1 8.66 ? C12 YUS 3005 D 1 
HETATM 16 C C13 YUS . . . AA 4 170.254 134.079 170.056 1 8.66 ? C13 YUS 3005 D 1 
HETATM 17 C C14 YUS . . . AA 4 170.096 133.919 171.402 1 8.66 ? C14 YUS 3005 D 1 
HETATM 18 N N YUS . . . AA 4 168.93 135.172 165.507 1 8.66 ? N YUS 3005 D 1 
HETATM 19 C C YUS . . . AA 4 170.232 134.918 165.728 1 8.66 ? C YUS 3005 D 1 
HETATM 20 O O YUS . . . AA 4 171.079 135.079 164.854 1 8.66 ? O YUS 3005 D 1 
HETATM 21 C C15 YUS . . . AA 4 170.119 135.011 172.249 1 8.66 ? C15 YUS 3005 D 1 
HETATM 22 C C16 YUS . . . AA 4 170.301 136.269 171.756 1 8.66 ? C16 YUS 3005 D 1 
HETATM 23 C C17 YUS . . . AA 4 170.472 136.484 170.367 1 8.66 ? C17 YUS 3005 D 1 
HETATM 24 C C18 YUS . . . AA 4 170.67 137.775 169.824 1 8.66 ? C18 YUS 3005 D 1 
HETATM 25 C C19 YUS . . . AA 4 170.835 137.942 168.482 1 8.66 ? C19 YUS 3005 D 1 
HETATM 26 C C20 YUS . . . AA 4 170.811 136.853 167.626 1 8.66 ? C20 YUS 3005 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#