data_7MC6 # _model_server_result.job_id nJBHIwWpAL5PboMiHd93_A _model_server_result.datetime_utc '2024-11-21 08:49:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":308}' # _entry.id 7MC6 # _exptl.entry_id 7MC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MC6 _cell.length_a 61.67 _cell.length_b 70.32 _cell.length_c 108.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 92 A ASP 90 1_555 M MG MG . A MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A OE2 GLU 94 A GLU 92 1_555 M MG MG . A MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A SG CYS 209 A CYS 207 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 A SG CYS 212 A CYS 210 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 A SG CYS 228 A CYS 226 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc6 A ND1 HIS 231 A HIS 229 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 A NE2 HIS 259 A HIS 257 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc8 A SG CYS 263 A CYS 261 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 A ND1 HIS 266 A HIS 264 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 A OD2 ASP 275 A ASP 273 1_555 M MG MG . A MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 A SG CYS 281 A CYS 279 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc12 M MG MG . A MG 311 1_555 R O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc13 M MG MG . A MG 311 1_555 R O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc14 M MG MG . A MG 311 1_555 R O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc15 B SG CYS 75 M CYS 74 1_555 N ZN ZN . M ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc16 B SG CYS 78 M CYS 77 1_555 N ZN ZN . M ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc17 B NE2 HIS 84 M HIS 83 1_555 N ZN ZN . M ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc18 B SG CYS 91 M CYS 90 1_555 N ZN ZN . M ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc19 B SG CYS 118 M CYS 117 1_555 O ZN ZN . M ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc20 B SG CYS 121 M CYS 120 1_555 O ZN ZN . M ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc21 B SG CYS 129 M CYS 128 1_555 O ZN ZN . M ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc22 B SG CYS 131 M CYS 130 1_555 O ZN ZN . M ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7MC6 _atom_sites.fract_transf_matrix[1][1] 0.016215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 301 ZN ZN . D 3 ZN A 1 302 302 ZN ZN . E 4 EDO A 1 303 313 EDO EDO . F 4 EDO A 1 304 314 EDO EDO . G 4 EDO A 1 305 322 EDO EDO . H 4 EDO A 1 306 323 EDO EDO . I 4 EDO A 1 307 401 EDO EDO . J 4 EDO A 1 308 501 EDO EDO . K 4 EDO A 1 309 601 EDO EDO . L 5 CL A 1 310 1 CL CL . M 6 MG A 1 311 1 MG MG . N 3 ZN M 1 201 201 ZN ZN . O 3 ZN M 1 202 202 ZN ZN . P 4 EDO M 1 203 204 EDO EDO . Q 4 EDO M 1 204 208 EDO EDO . R 7 HOH A 1 401 126 HOH HOH . R 7 HOH A 2 402 87 HOH HOH . R 7 HOH A 3 403 159 HOH HOH . R 7 HOH A 4 404 174 HOH HOH . R 7 HOH A 5 405 53 HOH HOH . R 7 HOH A 6 406 61 HOH HOH . R 7 HOH A 7 407 79 HOH HOH . R 7 HOH A 8 408 166 HOH HOH . R 7 HOH A 9 409 116 HOH HOH . R 7 HOH A 10 410 37 HOH HOH . R 7 HOH A 11 411 13 HOH HOH . R 7 HOH A 12 412 68 HOH HOH . R 7 HOH A 13 413 29 HOH HOH . R 7 HOH A 14 414 95 HOH HOH . R 7 HOH A 15 415 136 HOH HOH . R 7 HOH A 16 416 117 HOH HOH . R 7 HOH A 17 417 39 HOH HOH . R 7 HOH A 18 418 25 HOH HOH . R 7 HOH A 19 419 120 HOH HOH . R 7 HOH A 20 420 129 HOH HOH . R 7 HOH A 21 421 148 HOH HOH . R 7 HOH A 22 422 69 HOH HOH . R 7 HOH A 23 423 40 HOH HOH . R 7 HOH A 24 424 134 HOH HOH . R 7 HOH A 25 425 26 HOH HOH . R 7 HOH A 26 426 163 HOH HOH . R 7 HOH A 27 427 30 HOH HOH . R 7 HOH A 28 428 57 HOH HOH . R 7 HOH A 29 429 119 HOH HOH . R 7 HOH A 30 430 11 HOH HOH . R 7 HOH A 31 431 108 HOH HOH . R 7 HOH A 32 432 168 HOH HOH . R 7 HOH A 33 433 91 HOH HOH . R 7 HOH A 34 434 24 HOH HOH . R 7 HOH A 35 435 151 HOH HOH . R 7 HOH A 36 436 115 HOH HOH . R 7 HOH A 37 437 77 HOH HOH . R 7 HOH A 38 438 122 HOH HOH . R 7 HOH A 39 439 82 HOH HOH . R 7 HOH A 40 440 135 HOH HOH . R 7 HOH A 41 441 153 HOH HOH . R 7 HOH A 42 442 75 HOH HOH . R 7 HOH A 43 443 17 HOH HOH . R 7 HOH A 44 444 62 HOH HOH . R 7 HOH A 45 445 4 HOH HOH . R 7 HOH A 46 446 113 HOH HOH . R 7 HOH A 47 447 22 HOH HOH . R 7 HOH A 48 448 132 HOH HOH . R 7 HOH A 49 449 43 HOH HOH . R 7 HOH A 50 450 125 HOH HOH . R 7 HOH A 51 451 47 HOH HOH . R 7 HOH A 52 452 142 HOH HOH . R 7 HOH A 53 453 12 HOH HOH . R 7 HOH A 54 454 121 HOH HOH . R 7 HOH A 55 455 34 HOH HOH . R 7 HOH A 56 456 21 HOH HOH . R 7 HOH A 57 457 133 HOH HOH . R 7 HOH A 58 458 143 HOH HOH . R 7 HOH A 59 459 146 HOH HOH . R 7 HOH A 60 460 184 HOH HOH . R 7 HOH A 61 461 164 HOH HOH . R 7 HOH A 62 462 27 HOH HOH . R 7 HOH A 63 463 50 HOH HOH . R 7 HOH A 64 464 60 HOH HOH . R 7 HOH A 65 465 175 HOH HOH . R 7 HOH A 66 466 46 HOH HOH . R 7 HOH A 67 467 74 HOH HOH . R 7 HOH A 68 468 165 HOH HOH . R 7 HOH A 69 469 31 HOH HOH . R 7 HOH A 70 470 114 HOH HOH . R 7 HOH A 71 471 185 HOH HOH . R 7 HOH A 72 472 173 HOH HOH . R 7 HOH A 73 473 54 HOH HOH . R 7 HOH A 74 474 140 HOH HOH . R 7 HOH A 75 475 155 HOH HOH . R 7 HOH A 76 476 36 HOH HOH . R 7 HOH A 77 477 112 HOH HOH . R 7 HOH A 78 478 1 HOH HOH . R 7 HOH A 79 479 28 HOH HOH . R 7 HOH A 80 480 172 HOH HOH . R 7 HOH A 81 481 128 HOH HOH . R 7 HOH A 82 482 48 HOH HOH . R 7 HOH A 83 483 144 HOH HOH . R 7 HOH A 84 484 106 HOH HOH . R 7 HOH A 85 485 23 HOH HOH . R 7 HOH A 86 486 105 HOH HOH . R 7 HOH A 87 487 41 HOH HOH . R 7 HOH A 88 488 141 HOH HOH . R 7 HOH A 89 489 90 HOH HOH . R 7 HOH A 90 490 89 HOH HOH . R 7 HOH A 91 491 20 HOH HOH . R 7 HOH A 92 492 65 HOH HOH . R 7 HOH A 93 493 33 HOH HOH . R 7 HOH A 94 494 145 HOH HOH . R 7 HOH A 95 495 52 HOH HOH . R 7 HOH A 96 496 147 HOH HOH . R 7 HOH A 97 497 2 HOH HOH . R 7 HOH A 98 498 180 HOH HOH . R 7 HOH A 99 499 35 HOH HOH . R 7 HOH A 100 500 104 HOH HOH . R 7 HOH A 101 501 156 HOH HOH . R 7 HOH A 102 502 158 HOH HOH . R 7 HOH A 103 503 15 HOH HOH . R 7 HOH A 104 504 191 HOH HOH . R 7 HOH A 105 505 171 HOH HOH . R 7 HOH A 106 506 98 HOH HOH . R 7 HOH A 107 507 67 HOH HOH . R 7 HOH A 108 508 157 HOH HOH . R 7 HOH A 109 509 109 HOH HOH . R 7 HOH A 110 510 167 HOH HOH . R 7 HOH A 111 511 176 HOH HOH . R 7 HOH A 112 512 94 HOH HOH . R 7 HOH A 113 513 86 HOH HOH . R 7 HOH A 114 514 73 HOH HOH . R 7 HOH A 115 515 102 HOH HOH . R 7 HOH A 116 516 178 HOH HOH . R 7 HOH A 117 517 72 HOH HOH . R 7 HOH A 118 518 80 HOH HOH . R 7 HOH A 119 519 177 HOH HOH . R 7 HOH A 120 520 59 HOH HOH . R 7 HOH A 121 521 64 HOH HOH . R 7 HOH A 122 522 111 HOH HOH . R 7 HOH A 123 523 88 HOH HOH . R 7 HOH A 124 524 71 HOH HOH . R 7 HOH A 125 525 182 HOH HOH . R 7 HOH A 126 526 92 HOH HOH . R 7 HOH A 127 527 124 HOH HOH . R 7 HOH A 128 528 51 HOH HOH . R 7 HOH A 129 529 181 HOH HOH . R 7 HOH A 130 530 101 HOH HOH . S 7 HOH M 1 301 160 HOH HOH . S 7 HOH M 2 302 7 HOH HOH . S 7 HOH M 3 303 127 HOH HOH . S 7 HOH M 4 304 19 HOH HOH . S 7 HOH M 5 305 179 HOH HOH . S 7 HOH M 6 306 170 HOH HOH . S 7 HOH M 7 307 161 HOH HOH . S 7 HOH M 8 308 139 HOH HOH . S 7 HOH M 9 309 44 HOH HOH . S 7 HOH M 10 310 99 HOH HOH . S 7 HOH M 11 311 84 HOH HOH . S 7 HOH M 12 312 81 HOH HOH . S 7 HOH M 13 313 93 HOH HOH . S 7 HOH M 14 314 32 HOH HOH . S 7 HOH M 15 315 162 HOH HOH . S 7 HOH M 16 316 149 HOH HOH . S 7 HOH M 17 317 169 HOH HOH . S 7 HOH M 18 318 118 HOH HOH . S 7 HOH M 19 319 38 HOH HOH . S 7 HOH M 20 320 3 HOH HOH . S 7 HOH M 21 321 6 HOH HOH . S 7 HOH M 22 322 183 HOH HOH . S 7 HOH M 23 323 137 HOH HOH . S 7 HOH M 24 324 49 HOH HOH . S 7 HOH M 25 325 14 HOH HOH . S 7 HOH M 26 326 189 HOH HOH . S 7 HOH M 27 327 16 HOH HOH . S 7 HOH M 28 328 66 HOH HOH . S 7 HOH M 29 329 63 HOH HOH . S 7 HOH M 30 330 5 HOH HOH . S 7 HOH M 31 331 150 HOH HOH . S 7 HOH M 32 332 97 HOH HOH . S 7 HOH M 33 333 85 HOH HOH . S 7 HOH M 34 334 9 HOH HOH . S 7 HOH M 35 335 58 HOH HOH . S 7 HOH M 36 336 10 HOH HOH . S 7 HOH M 37 337 107 HOH HOH . S 7 HOH M 38 338 123 HOH HOH . S 7 HOH M 39 339 152 HOH HOH . S 7 HOH M 40 340 130 HOH HOH . S 7 HOH M 41 341 8 HOH HOH . S 7 HOH M 42 342 186 HOH HOH . S 7 HOH M 43 343 187 HOH HOH . S 7 HOH M 44 344 131 HOH HOH . S 7 HOH M 45 345 154 HOH HOH . S 7 HOH M 46 346 78 HOH HOH . S 7 HOH M 47 347 76 HOH HOH . S 7 HOH M 48 348 83 HOH HOH . S 7 HOH M 49 349 138 HOH HOH . S 7 HOH M 50 350 70 HOH HOH . S 7 HOH M 51 351 96 HOH HOH . S 7 HOH M 52 352 190 HOH HOH . S 7 HOH M 53 353 188 HOH HOH . S 7 HOH M 54 354 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 13.04 10.009 -9.519 1 59.47 ? C1 EDO 308 A 1 HETATM 2 O O1 EDO . . . J 4 11.746 9.734 -8.97 1 54.33 ? O1 EDO 308 A 1 HETATM 3 C C2 EDO . . . J 4 14.041 10.2 -8.386 1 55.15 ? C2 EDO 308 A 1 HETATM 4 O O2 EDO . . . J 4 13.629 11.294 -7.559 1 57.14 ? O2 EDO 308 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 4 #