data_7MCB # _model_server_result.job_id Dd8FeWlhYMU_8MfcW2KsdA _model_server_result.datetime_utc '2024-11-29 23:57:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7MCB # _exptl.entry_id 7MCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MCB _cell.length_a 105.133 _cell.length_b 105.133 _cell.length_c 288.148 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 105.133 105.133 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 105.133 105.133 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N SER 1 H SER 1 1_555 B C4A PLP . H PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 A C THR 195 H THR 195 1_555 A N LLP 196 H LLP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C LLP 196 H LLP 196 1_555 A N TYR 197 H TYR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A O HIS 9 H HIS 9 1_555 D NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc2 A O GLY 11 H GLY 11 1_555 D NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 C NA NA . H NA 402 1_555 I O HOH . H HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 C NA NA . H NA 402 1_555 I O HOH . H HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc5 C NA NA . H NA 402 1_555 I O HOH . H HOH 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc6 C NA NA . H NA 402 1_555 I O HOH . H HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc7 C NA NA . H NA 402 1_555 I O HOH . H HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc8 D NA NA . H NA 403 1_555 I O HOH . H HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc9 D NA NA . H NA 403 1_555 I O HOH . H HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc10 D NA NA . H NA 403 1_555 I O HOH . H HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc11 D NA NA . H NA 403 1_555 I O HOH . H HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MCB _atom_sites.fract_transf_matrix[1][1] 0.009512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP H 1 401 401 PLP PLP . C 3 NA H 1 402 1 NA NA . D 3 NA H 1 403 2 NA NA . E 4 GOL H 1 404 3 GOL GOL . F 4 GOL H 1 405 4 GOL GOL . G 4 GOL H 1 406 5 GOL GOL . H 4 GOL H 1 407 6 GOL GOL . I 5 HOH H 1 501 129 HOH HOH . I 5 HOH H 2 502 6 HOH HOH . I 5 HOH H 3 503 29 HOH HOH . I 5 HOH H 4 504 38 HOH HOH . I 5 HOH H 5 505 102 HOH HOH . I 5 HOH H 6 506 41 HOH HOH . I 5 HOH H 7 507 122 HOH HOH . I 5 HOH H 8 508 55 HOH HOH . I 5 HOH H 9 509 63 HOH HOH . I 5 HOH H 10 510 181 HOH HOH . I 5 HOH H 11 511 45 HOH HOH . I 5 HOH H 12 512 170 HOH HOH . I 5 HOH H 13 513 114 HOH HOH . I 5 HOH H 14 514 46 HOH HOH . I 5 HOH H 15 515 185 HOH HOH . I 5 HOH H 16 516 10 HOH HOH . I 5 HOH H 17 517 68 HOH HOH . I 5 HOH H 18 518 277 HOH HOH . I 5 HOH H 19 519 103 HOH HOH . I 5 HOH H 20 520 131 HOH HOH . I 5 HOH H 21 521 85 HOH HOH . I 5 HOH H 22 522 123 HOH HOH . I 5 HOH H 23 523 97 HOH HOH . I 5 HOH H 24 524 24 HOH HOH . I 5 HOH H 25 525 11 HOH HOH . I 5 HOH H 26 526 34 HOH HOH . I 5 HOH H 27 527 3 HOH HOH . I 5 HOH H 28 528 72 HOH HOH . I 5 HOH H 29 529 22 HOH HOH . I 5 HOH H 30 530 137 HOH HOH . I 5 HOH H 31 531 36 HOH HOH . I 5 HOH H 32 532 32 HOH HOH . I 5 HOH H 33 533 187 HOH HOH . I 5 HOH H 34 534 2 HOH HOH . I 5 HOH H 35 535 75 HOH HOH . I 5 HOH H 36 536 31 HOH HOH . I 5 HOH H 37 537 168 HOH HOH . I 5 HOH H 38 538 56 HOH HOH . I 5 HOH H 39 539 132 HOH HOH . I 5 HOH H 40 540 120 HOH HOH . I 5 HOH H 41 541 106 HOH HOH . I 5 HOH H 42 542 195 HOH HOH . I 5 HOH H 43 543 77 HOH HOH . I 5 HOH H 44 544 179 HOH HOH . I 5 HOH H 45 545 48 HOH HOH . I 5 HOH H 46 546 25 HOH HOH . I 5 HOH H 47 547 73 HOH HOH . I 5 HOH H 48 548 71 HOH HOH . I 5 HOH H 49 549 44 HOH HOH . I 5 HOH H 50 550 8 HOH HOH . I 5 HOH H 51 551 105 HOH HOH . I 5 HOH H 52 552 19 HOH HOH . I 5 HOH H 53 553 270 HOH HOH . I 5 HOH H 54 554 14 HOH HOH . I 5 HOH H 55 555 4 HOH HOH . I 5 HOH H 56 556 144 HOH HOH . I 5 HOH H 57 557 154 HOH HOH . I 5 HOH H 58 558 111 HOH HOH . I 5 HOH H 59 559 113 HOH HOH . I 5 HOH H 60 560 52 HOH HOH . I 5 HOH H 61 561 193 HOH HOH . I 5 HOH H 62 562 47 HOH HOH . I 5 HOH H 63 563 5 HOH HOH . I 5 HOH H 64 564 87 HOH HOH . I 5 HOH H 65 565 57 HOH HOH . I 5 HOH H 66 566 7 HOH HOH . I 5 HOH H 67 567 99 HOH HOH . I 5 HOH H 68 568 184 HOH HOH . I 5 HOH H 69 569 27 HOH HOH . I 5 HOH H 70 570 21 HOH HOH . I 5 HOH H 71 571 90 HOH HOH . I 5 HOH H 72 572 17 HOH HOH . I 5 HOH H 73 573 203 HOH HOH . I 5 HOH H 74 574 239 HOH HOH . I 5 HOH H 75 575 18 HOH HOH . I 5 HOH H 76 576 91 HOH HOH . I 5 HOH H 77 577 235 HOH HOH . I 5 HOH H 78 578 35 HOH HOH . I 5 HOH H 79 579 96 HOH HOH . I 5 HOH H 80 580 70 HOH HOH . I 5 HOH H 81 581 164 HOH HOH . I 5 HOH H 82 582 66 HOH HOH . I 5 HOH H 83 583 135 HOH HOH . I 5 HOH H 84 584 26 HOH HOH . I 5 HOH H 85 585 59 HOH HOH . I 5 HOH H 86 586 88 HOH HOH . I 5 HOH H 87 587 142 HOH HOH . I 5 HOH H 88 588 9 HOH HOH . I 5 HOH H 89 589 145 HOH HOH . I 5 HOH H 90 590 64 HOH HOH . I 5 HOH H 91 591 149 HOH HOH . I 5 HOH H 92 592 109 HOH HOH . I 5 HOH H 93 593 158 HOH HOH . I 5 HOH H 94 594 50 HOH HOH . I 5 HOH H 95 595 108 HOH HOH . I 5 HOH H 96 596 180 HOH HOH . I 5 HOH H 97 597 40 HOH HOH . I 5 HOH H 98 598 16 HOH HOH . I 5 HOH H 99 599 173 HOH HOH . I 5 HOH H 100 600 249 HOH HOH . I 5 HOH H 101 601 119 HOH HOH . I 5 HOH H 102 602 177 HOH HOH . I 5 HOH H 103 603 196 HOH HOH . I 5 HOH H 104 604 74 HOH HOH . I 5 HOH H 105 605 60 HOH HOH . I 5 HOH H 106 606 101 HOH HOH . I 5 HOH H 107 607 43 HOH HOH . I 5 HOH H 108 608 92 HOH HOH . I 5 HOH H 109 609 265 HOH HOH . I 5 HOH H 110 610 39 HOH HOH . I 5 HOH H 111 611 54 HOH HOH . I 5 HOH H 112 612 95 HOH HOH . I 5 HOH H 113 613 155 HOH HOH . I 5 HOH H 114 614 194 HOH HOH . I 5 HOH H 115 615 80 HOH HOH . I 5 HOH H 116 616 166 HOH HOH . I 5 HOH H 117 617 268 HOH HOH . I 5 HOH H 118 618 1 HOH HOH . I 5 HOH H 119 619 165 HOH HOH . I 5 HOH H 120 620 228 HOH HOH . I 5 HOH H 121 621 161 HOH HOH . I 5 HOH H 122 622 220 HOH HOH . I 5 HOH H 123 623 197 HOH HOH . I 5 HOH H 124 624 133 HOH HOH . I 5 HOH H 125 625 53 HOH HOH . I 5 HOH H 126 626 30 HOH HOH . I 5 HOH H 127 627 84 HOH HOH . I 5 HOH H 128 628 83 HOH HOH . I 5 HOH H 129 629 58 HOH HOH . I 5 HOH H 130 630 139 HOH HOH . I 5 HOH H 131 631 163 HOH HOH . I 5 HOH H 132 632 15 HOH HOH . I 5 HOH H 133 633 127 HOH HOH . I 5 HOH H 134 634 116 HOH HOH . I 5 HOH H 135 635 252 HOH HOH . I 5 HOH H 136 636 259 HOH HOH . I 5 HOH H 137 637 12 HOH HOH . I 5 HOH H 138 638 67 HOH HOH . I 5 HOH H 139 639 227 HOH HOH . I 5 HOH H 140 640 13 HOH HOH . I 5 HOH H 141 641 230 HOH HOH . I 5 HOH H 142 642 65 HOH HOH . I 5 HOH H 143 643 244 HOH HOH . I 5 HOH H 144 644 178 HOH HOH . I 5 HOH H 145 645 243 HOH HOH . I 5 HOH H 146 646 23 HOH HOH . I 5 HOH H 147 647 37 HOH HOH . I 5 HOH H 148 648 148 HOH HOH . I 5 HOH H 149 649 262 HOH HOH . I 5 HOH H 150 650 182 HOH HOH . I 5 HOH H 151 651 49 HOH HOH . I 5 HOH H 152 652 20 HOH HOH . I 5 HOH H 153 653 245 HOH HOH . I 5 HOH H 154 654 152 HOH HOH . I 5 HOH H 155 655 242 HOH HOH . I 5 HOH H 156 656 209 HOH HOH . I 5 HOH H 157 657 125 HOH HOH . I 5 HOH H 158 658 69 HOH HOH . I 5 HOH H 159 659 76 HOH HOH . I 5 HOH H 160 660 110 HOH HOH . I 5 HOH H 161 661 33 HOH HOH . I 5 HOH H 162 662 198 HOH HOH . I 5 HOH H 163 663 273 HOH HOH . I 5 HOH H 164 664 28 HOH HOH . I 5 HOH H 165 665 140 HOH HOH . I 5 HOH H 166 666 78 HOH HOH . I 5 HOH H 167 667 202 HOH HOH . I 5 HOH H 168 668 225 HOH HOH . I 5 HOH H 169 669 153 HOH HOH . I 5 HOH H 170 670 257 HOH HOH . I 5 HOH H 171 671 224 HOH HOH . I 5 HOH H 172 672 222 HOH HOH . I 5 HOH H 173 673 118 HOH HOH . I 5 HOH H 174 674 159 HOH HOH . I 5 HOH H 175 675 143 HOH HOH . I 5 HOH H 176 676 188 HOH HOH . I 5 HOH H 177 677 162 HOH HOH . I 5 HOH H 178 678 141 HOH HOH . I 5 HOH H 179 679 117 HOH HOH . I 5 HOH H 180 680 176 HOH HOH . I 5 HOH H 181 681 94 HOH HOH . I 5 HOH H 182 682 266 HOH HOH . I 5 HOH H 183 683 51 HOH HOH . I 5 HOH H 184 684 226 HOH HOH . I 5 HOH H 185 685 147 HOH HOH . I 5 HOH H 186 686 150 HOH HOH . I 5 HOH H 187 687 207 HOH HOH . I 5 HOH H 188 688 61 HOH HOH . I 5 HOH H 189 689 186 HOH HOH . I 5 HOH H 190 690 157 HOH HOH . I 5 HOH H 191 691 79 HOH HOH . I 5 HOH H 192 692 98 HOH HOH . I 5 HOH H 193 693 231 HOH HOH . I 5 HOH H 194 694 221 HOH HOH . I 5 HOH H 195 695 264 HOH HOH . I 5 HOH H 196 696 271 HOH HOH . I 5 HOH H 197 697 124 HOH HOH . I 5 HOH H 198 698 126 HOH HOH . I 5 HOH H 199 699 272 HOH HOH . I 5 HOH H 200 700 107 HOH HOH . I 5 HOH H 201 701 255 HOH HOH . I 5 HOH H 202 702 201 HOH HOH . I 5 HOH H 203 703 256 HOH HOH . I 5 HOH H 204 704 237 HOH HOH . I 5 HOH H 205 705 146 HOH HOH . I 5 HOH H 206 706 134 HOH HOH . I 5 HOH H 207 707 223 HOH HOH . I 5 HOH H 208 708 253 HOH HOH . I 5 HOH H 209 709 167 HOH HOH . I 5 HOH H 210 710 274 HOH HOH . I 5 HOH H 211 711 151 HOH HOH . I 5 HOH H 212 712 175 HOH HOH . I 5 HOH H 213 713 190 HOH HOH . I 5 HOH H 214 714 258 HOH HOH . I 5 HOH H 215 715 278 HOH HOH . I 5 HOH H 216 716 169 HOH HOH . I 5 HOH H 217 717 269 HOH HOH . I 5 HOH H 218 718 219 HOH HOH . I 5 HOH H 219 719 250 HOH HOH . I 5 HOH H 220 720 130 HOH HOH . I 5 HOH H 221 721 218 HOH HOH . I 5 HOH H 222 722 276 HOH HOH . I 5 HOH H 223 723 263 HOH HOH . I 5 HOH H 224 724 251 HOH HOH . I 5 HOH H 225 725 261 HOH HOH . I 5 HOH H 226 726 229 HOH HOH . I 5 HOH H 227 727 100 HOH HOH . I 5 HOH H 228 728 183 HOH HOH . I 5 HOH H 229 729 206 HOH HOH . I 5 HOH H 230 730 275 HOH HOH . I 5 HOH H 231 731 138 HOH HOH . I 5 HOH H 232 732 260 HOH HOH . I 5 HOH H 233 733 93 HOH HOH . I 5 HOH H 234 734 267 HOH HOH . I 5 HOH H 235 735 89 HOH HOH . I 5 HOH H 236 736 215 HOH HOH . I 5 HOH H 237 737 82 HOH HOH . I 5 HOH H 238 738 236 HOH HOH . I 5 HOH H 239 739 192 HOH HOH . I 5 HOH H 240 740 217 HOH HOH . I 5 HOH H 241 741 104 HOH HOH . I 5 HOH H 242 742 136 HOH HOH . I 5 HOH H 243 743 205 HOH HOH . I 5 HOH H 244 744 115 HOH HOH . I 5 HOH H 245 745 246 HOH HOH . I 5 HOH H 246 746 112 HOH HOH . I 5 HOH H 247 747 232 HOH HOH . I 5 HOH H 248 748 247 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 53.265 _atom_site.Cartn_y 30.106 _atom_site.Cartn_z -3.812 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #