data_7MCL
#
_model_server_result.job_id            GFNsRfmdGsAhEgGfctS0Rw 
_model_server_result.datetime_utc      '2024-12-01 06:17:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mcl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7MCL 
#
_exptl.entry_id    7MCL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MCL 
_cell.length_a            104.966 
_cell.length_b            104.966 
_cell.length_c            289.569 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MCL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    'I 4bw 2bw' 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 104.966 104.966 0 
3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 104.966 104.966 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E NA NA . H NA 404 1_555 F O HOH . H HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc2 E NA NA . H NA 404 1_555 F O HOH . H HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     7MCL 
_atom_sites.fract_transf_matrix[1][1]    0.009527 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009527 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP H 1 401 401 PLP PLP . 
C 3 GOL H 1 402 1 GOL GOL . 
D 3 GOL H 1 403 2 GOL GOL . 
E 4 NA H 1 404 2 NA NA . 
F 5 HOH H 1 501 32 HOH HOH . 
F 5 HOH H 2 502 1 HOH HOH . 
F 5 HOH H 3 503 42 HOH HOH . 
F 5 HOH H 4 504 4 HOH HOH . 
F 5 HOH H 5 505 3 HOH HOH . 
F 5 HOH H 6 506 12 HOH HOH . 
F 5 HOH H 7 507 33 HOH HOH . 
F 5 HOH H 8 508 107 HOH HOH . 
F 5 HOH H 9 509 22 HOH HOH . 
F 5 HOH H 10 510 77 HOH HOH . 
F 5 HOH H 11 511 55 HOH HOH . 
F 5 HOH H 12 512 86 HOH HOH . 
F 5 HOH H 13 513 28 HOH HOH . 
F 5 HOH H 14 514 49 HOH HOH . 
F 5 HOH H 15 515 116 HOH HOH . 
F 5 HOH H 16 516 65 HOH HOH . 
F 5 HOH H 17 517 50 HOH HOH . 
F 5 HOH H 18 518 7 HOH HOH . 
F 5 HOH H 19 519 85 HOH HOH . 
F 5 HOH H 20 520 62 HOH HOH . 
F 5 HOH H 21 521 106 HOH HOH . 
F 5 HOH H 22 522 47 HOH HOH . 
F 5 HOH H 23 523 2 HOH HOH . 
F 5 HOH H 24 524 24 HOH HOH . 
F 5 HOH H 25 525 40 HOH HOH . 
F 5 HOH H 26 526 41 HOH HOH . 
F 5 HOH H 27 527 66 HOH HOH . 
F 5 HOH H 28 528 34 HOH HOH . 
F 5 HOH H 29 529 46 HOH HOH . 
F 5 HOH H 30 530 15 HOH HOH . 
F 5 HOH H 31 531 93 HOH HOH . 
F 5 HOH H 32 532 20 HOH HOH . 
F 5 HOH H 33 533 72 HOH HOH . 
F 5 HOH H 34 534 69 HOH HOH . 
F 5 HOH H 35 535 127 HOH HOH . 
F 5 HOH H 36 536 57 HOH HOH . 
F 5 HOH H 37 537 11 HOH HOH . 
F 5 HOH H 38 538 23 HOH HOH . 
F 5 HOH H 39 539 78 HOH HOH . 
F 5 HOH H 40 540 81 HOH HOH . 
F 5 HOH H 41 541 121 HOH HOH . 
F 5 HOH H 42 542 53 HOH HOH . 
F 5 HOH H 43 543 58 HOH HOH . 
F 5 HOH H 44 544 10 HOH HOH . 
F 5 HOH H 45 545 35 HOH HOH . 
F 5 HOH H 46 546 25 HOH HOH . 
F 5 HOH H 47 547 56 HOH HOH . 
F 5 HOH H 48 548 54 HOH HOH . 
F 5 HOH H 49 549 74 HOH HOH . 
F 5 HOH H 50 550 63 HOH HOH . 
F 5 HOH H 51 551 9 HOH HOH . 
F 5 HOH H 52 552 114 HOH HOH . 
F 5 HOH H 53 553 51 HOH HOH . 
F 5 HOH H 54 554 5 HOH HOH . 
F 5 HOH H 55 555 98 HOH HOH . 
F 5 HOH H 56 556 29 HOH HOH . 
F 5 HOH H 57 557 60 HOH HOH . 
F 5 HOH H 58 558 38 HOH HOH . 
F 5 HOH H 59 559 43 HOH HOH . 
F 5 HOH H 60 560 117 HOH HOH . 
F 5 HOH H 61 561 52 HOH HOH . 
F 5 HOH H 62 562 84 HOH HOH . 
F 5 HOH H 63 563 80 HOH HOH . 
F 5 HOH H 64 564 37 HOH HOH . 
F 5 HOH H 65 565 68 HOH HOH . 
F 5 HOH H 66 566 95 HOH HOH . 
F 5 HOH H 67 567 120 HOH HOH . 
F 5 HOH H 68 568 87 HOH HOH . 
F 5 HOH H 69 569 73 HOH HOH . 
F 5 HOH H 70 570 48 HOH HOH . 
F 5 HOH H 71 571 144 HOH HOH . 
F 5 HOH H 72 572 111 HOH HOH . 
F 5 HOH H 73 573 88 HOH HOH . 
F 5 HOH H 74 574 110 HOH HOH . 
F 5 HOH H 75 575 83 HOH HOH . 
F 5 HOH H 76 576 16 HOH HOH . 
F 5 HOH H 77 577 19 HOH HOH . 
F 5 HOH H 78 578 13 HOH HOH . 
F 5 HOH H 79 579 17 HOH HOH . 
F 5 HOH H 80 580 26 HOH HOH . 
F 5 HOH H 81 581 45 HOH HOH . 
F 5 HOH H 82 582 101 HOH HOH . 
F 5 HOH H 83 583 138 HOH HOH . 
F 5 HOH H 84 584 115 HOH HOH . 
F 5 HOH H 85 585 71 HOH HOH . 
F 5 HOH H 86 586 133 HOH HOH . 
F 5 HOH H 87 587 27 HOH HOH . 
F 5 HOH H 88 588 8 HOH HOH . 
F 5 HOH H 89 589 30 HOH HOH . 
F 5 HOH H 90 590 70 HOH HOH . 
F 5 HOH H 91 591 146 HOH HOH . 
F 5 HOH H 92 592 109 HOH HOH . 
F 5 HOH H 93 593 18 HOH HOH . 
F 5 HOH H 94 594 31 HOH HOH . 
F 5 HOH H 95 595 21 HOH HOH . 
F 5 HOH H 96 596 76 HOH HOH . 
F 5 HOH H 97 597 140 HOH HOH . 
F 5 HOH H 98 598 104 HOH HOH . 
F 5 HOH H 99 599 14 HOH HOH . 
F 5 HOH H 100 600 59 HOH HOH . 
F 5 HOH H 101 601 126 HOH HOH . 
F 5 HOH H 102 602 128 HOH HOH . 
F 5 HOH H 103 603 153 HOH HOH . 
F 5 HOH H 104 604 150 HOH HOH . 
F 5 HOH H 105 605 94 HOH HOH . 
F 5 HOH H 106 606 67 HOH HOH . 
F 5 HOH H 107 607 100 HOH HOH . 
F 5 HOH H 108 608 122 HOH HOH . 
F 5 HOH H 109 609 148 HOH HOH . 
F 5 HOH H 110 610 75 HOH HOH . 
F 5 HOH H 111 611 131 HOH HOH . 
F 5 HOH H 112 612 99 HOH HOH . 
F 5 HOH H 113 613 123 HOH HOH . 
F 5 HOH H 114 614 156 HOH HOH . 
F 5 HOH H 115 615 136 HOH HOH . 
F 5 HOH H 116 616 141 HOH HOH . 
F 5 HOH H 117 617 132 HOH HOH . 
F 5 HOH H 118 618 97 HOH HOH . 
F 5 HOH H 119 619 118 HOH HOH . 
F 5 HOH H 120 620 157 HOH HOH . 
F 5 HOH H 121 621 129 HOH HOH . 
F 5 HOH H 122 622 130 HOH HOH . 
F 5 HOH H 123 623 96 HOH HOH . 
F 5 HOH H 124 624 105 HOH HOH . 
F 5 HOH H 125 625 154 HOH HOH . 
F 5 HOH H 126 626 151 HOH HOH . 
F 5 HOH H 127 627 61 HOH HOH . 
F 5 HOH H 128 628 112 HOH HOH . 
F 5 HOH H 129 629 143 HOH HOH . 
F 5 HOH H 130 630 139 HOH HOH . 
F 5 HOH H 131 631 124 HOH HOH . 
F 5 HOH H 132 632 147 HOH HOH . 
F 5 HOH H 133 633 142 HOH HOH . 
F 5 HOH H 134 634 155 HOH HOH . 
F 5 HOH H 135 635 89 HOH HOH . 
F 5 HOH H 136 636 152 HOH HOH . 
F 5 HOH H 137 637 90 HOH HOH . 
F 5 HOH H 138 638 145 HOH HOH . 
F 5 HOH H 139 639 64 HOH HOH . 
F 5 HOH H 140 640 158 HOH HOH . 
F 5 HOH H 141 641 44 HOH HOH . 
F 5 HOH H 142 642 102 HOH HOH . 
F 5 HOH H 143 643 92 HOH HOH . 
F 5 HOH H 144 644 137 HOH HOH . 
F 5 HOH H 145 645 125 HOH HOH . 
F 5 HOH H 146 646 160 HOH HOH . 
F 5 HOH H 147 647 119 HOH HOH . 
F 5 HOH H 148 648 103 HOH HOH . 
F 5 HOH H 149 649 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . B 2 39.397 47.727 -21.753 1 59.04 ? N1 PLP 401 H 1 
HETATM 2 C C2 PLP . . . B 2 38.286 48.142 -22.403 0 58.65 ? C2 PLP 401 H 1 
HETATM 3 C C2A PLP . . . B 2 37.869 47.414 -23.654 1 59.25 ? C2A PLP 401 H 1 
HETATM 4 C C3 PLP . . . B 2 37.536 49.222 -21.941 1 59.04 ? C3 PLP 401 H 1 
HETATM 5 O O3 PLP . . . B 2 36.429 49.635 -22.604 0.61 60.85 ? O3 PLP 401 H 1 
HETATM 6 C C4 PLP . . . B 2 37.911 49.898 -20.791 0 61.11 ? C4 PLP 401 H 1 
HETATM 7 C C4A PLP . . . B 2 37.093 51.042 -20.338 1 68.86 ? C4A PLP 401 H 1 
HETATM 8 O O4A PLP . . . B 2 36.261 51.62 -21.028 1 66.32 ? O4A PLP 401 H 1 
HETATM 9 C C5 PLP . . . B 2 39.057 49.467 -20.105 0.86 61.24 ? C5 PLP 401 H 1 
HETATM 10 C C6 PLP . . . B 2 39.761 48.375 -20.624 0.94 62.81 ? C6 PLP 401 H 1 
HETATM 11 C C5A PLP . . . B 2 39.525 50.144 -18.85 1 54.55 ? C5A PLP 401 H 1 
HETATM 12 O O4P PLP . . . B 2 40.421 49.262 -18.194 0.47 53.51 ? O4P PLP 401 H 1 
HETATM 13 P P PLP . . . B 2 41.737 49.908 -17.552 0.28 49.43 ? P PLP 401 H 1 
HETATM 14 O O1P PLP . . . B 2 42.562 50.539 -18.665 0.9 50.47 ? O1P PLP 401 H 1 
HETATM 15 O O2P PLP . . . B 2 41.255 50.954 -16.584 0.84 51.44 ? O2P PLP 401 H 1 
HETATM 16 O O3P PLP . . . B 2 42.489 48.814 -16.843 1 39.35 ? O3P PLP 401 H 1 
#
_model_server_stats.io_time_ms              94 
_model_server_stats.parse_time_ms           73 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           835 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#