data_7MCN # _model_server_result.job_id mvFEPRqzpsmp_VmCCgLJdw _model_server_result.datetime_utc '2024-12-01 12:15:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7MCN # _exptl.entry_id 7MCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MCN _cell.length_a 104.282 _cell.length_b 104.282 _cell.length_c 287.676 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 104.282 104.282 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 104.282 104.282 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N SER 1 H SER 1 1_555 B C4A PLP . H PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 A C THR 195 H THR 195 1_555 A N LLP 196 H LLP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C LLP 196 H LLP 196 1_555 A N TYR 197 H TYR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A O HIS 9 H HIS 9 1_555 E NA NA . H NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc2 A O GLY 11 H GLY 11 1_555 E NA NA . H NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 D NA NA . H NA 403 1_555 J O HOH . H HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc4 D NA NA . H NA 403 1_555 J O HOH . H HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 D NA NA . H NA 403 1_555 J O HOH . H HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc6 E NA NA . H NA 404 1_555 J O HOH . H HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc7 E NA NA . H NA 404 1_555 J O HOH . H HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 7MCN _atom_sites.fract_transf_matrix[1][1] 0.009589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP H 1 401 401 PLP PLP . C 3 EPE H 1 402 402 EPE EPE . D 4 NA H 1 403 1 NA NA . E 4 NA H 1 404 3 NA NA . F 5 GOL H 1 405 3 GOL GOL . G 5 GOL H 1 406 4 GOL GOL . H 5 GOL H 1 407 7 GOL GOL . I 5 GOL H 1 408 8 GOL GOL . J 6 HOH H 1 501 76 HOH HOH . J 6 HOH H 2 502 44 HOH HOH . J 6 HOH H 3 503 74 HOH HOH . J 6 HOH H 4 504 83 HOH HOH . J 6 HOH H 5 505 65 HOH HOH . J 6 HOH H 6 506 106 HOH HOH . J 6 HOH H 7 507 48 HOH HOH . J 6 HOH H 8 508 14 HOH HOH . J 6 HOH H 9 509 7 HOH HOH . J 6 HOH H 10 510 3 HOH HOH . J 6 HOH H 11 511 26 HOH HOH . J 6 HOH H 12 512 62 HOH HOH . J 6 HOH H 13 513 16 HOH HOH . J 6 HOH H 14 514 17 HOH HOH . J 6 HOH H 15 515 157 HOH HOH . J 6 HOH H 16 516 58 HOH HOH . J 6 HOH H 17 517 23 HOH HOH . J 6 HOH H 18 518 90 HOH HOH . J 6 HOH H 19 519 57 HOH HOH . J 6 HOH H 20 520 72 HOH HOH . J 6 HOH H 21 521 95 HOH HOH . J 6 HOH H 22 522 34 HOH HOH . J 6 HOH H 23 523 133 HOH HOH . J 6 HOH H 24 524 20 HOH HOH . J 6 HOH H 25 525 167 HOH HOH . J 6 HOH H 26 526 1 HOH HOH . J 6 HOH H 27 527 155 HOH HOH . J 6 HOH H 28 528 13 HOH HOH . J 6 HOH H 29 529 9 HOH HOH . J 6 HOH H 30 530 88 HOH HOH . J 6 HOH H 31 531 6 HOH HOH . J 6 HOH H 32 532 93 HOH HOH . J 6 HOH H 33 533 142 HOH HOH . J 6 HOH H 34 534 84 HOH HOH . J 6 HOH H 35 535 94 HOH HOH . J 6 HOH H 36 536 28 HOH HOH . J 6 HOH H 37 537 102 HOH HOH . J 6 HOH H 38 538 73 HOH HOH . J 6 HOH H 39 539 149 HOH HOH . J 6 HOH H 40 540 38 HOH HOH . J 6 HOH H 41 541 10 HOH HOH . J 6 HOH H 42 542 160 HOH HOH . J 6 HOH H 43 543 82 HOH HOH . J 6 HOH H 44 544 148 HOH HOH . J 6 HOH H 45 545 30 HOH HOH . J 6 HOH H 46 546 46 HOH HOH . J 6 HOH H 47 547 21 HOH HOH . J 6 HOH H 48 548 18 HOH HOH . J 6 HOH H 49 549 39 HOH HOH . J 6 HOH H 50 550 32 HOH HOH . J 6 HOH H 51 551 60 HOH HOH . J 6 HOH H 52 552 61 HOH HOH . J 6 HOH H 53 553 104 HOH HOH . J 6 HOH H 54 554 86 HOH HOH . J 6 HOH H 55 555 91 HOH HOH . J 6 HOH H 56 556 41 HOH HOH . J 6 HOH H 57 557 22 HOH HOH . J 6 HOH H 58 558 107 HOH HOH . J 6 HOH H 59 559 12 HOH HOH . J 6 HOH H 60 560 126 HOH HOH . J 6 HOH H 61 561 5 HOH HOH . J 6 HOH H 62 562 27 HOH HOH . J 6 HOH H 63 563 98 HOH HOH . J 6 HOH H 64 564 40 HOH HOH . J 6 HOH H 65 565 127 HOH HOH . J 6 HOH H 66 566 2 HOH HOH . J 6 HOH H 67 567 50 HOH HOH . J 6 HOH H 68 568 80 HOH HOH . J 6 HOH H 69 569 55 HOH HOH . J 6 HOH H 70 570 163 HOH HOH . J 6 HOH H 71 571 33 HOH HOH . J 6 HOH H 72 572 124 HOH HOH . J 6 HOH H 73 573 101 HOH HOH . J 6 HOH H 74 574 36 HOH HOH . J 6 HOH H 75 575 35 HOH HOH . J 6 HOH H 76 576 29 HOH HOH . J 6 HOH H 77 577 170 HOH HOH . J 6 HOH H 78 578 52 HOH HOH . J 6 HOH H 79 579 112 HOH HOH . J 6 HOH H 80 580 43 HOH HOH . J 6 HOH H 81 581 79 HOH HOH . J 6 HOH H 82 582 147 HOH HOH . J 6 HOH H 83 583 136 HOH HOH . J 6 HOH H 84 584 37 HOH HOH . J 6 HOH H 85 585 134 HOH HOH . J 6 HOH H 86 586 45 HOH HOH . J 6 HOH H 87 587 31 HOH HOH . J 6 HOH H 88 588 53 HOH HOH . J 6 HOH H 89 589 59 HOH HOH . J 6 HOH H 90 590 152 HOH HOH . J 6 HOH H 91 591 19 HOH HOH . J 6 HOH H 92 592 129 HOH HOH . J 6 HOH H 93 593 110 HOH HOH . J 6 HOH H 94 594 24 HOH HOH . J 6 HOH H 95 595 89 HOH HOH . J 6 HOH H 96 596 8 HOH HOH . J 6 HOH H 97 597 109 HOH HOH . J 6 HOH H 98 598 47 HOH HOH . J 6 HOH H 99 599 137 HOH HOH . J 6 HOH H 100 600 140 HOH HOH . J 6 HOH H 101 601 51 HOH HOH . J 6 HOH H 102 602 153 HOH HOH . J 6 HOH H 103 603 92 HOH HOH . J 6 HOH H 104 604 135 HOH HOH . J 6 HOH H 105 605 131 HOH HOH . J 6 HOH H 106 606 78 HOH HOH . J 6 HOH H 107 607 69 HOH HOH . J 6 HOH H 108 608 81 HOH HOH . J 6 HOH H 109 609 130 HOH HOH . J 6 HOH H 110 610 25 HOH HOH . J 6 HOH H 111 611 121 HOH HOH . J 6 HOH H 112 612 77 HOH HOH . J 6 HOH H 113 613 85 HOH HOH . J 6 HOH H 114 614 64 HOH HOH . J 6 HOH H 115 615 172 HOH HOH . J 6 HOH H 116 616 119 HOH HOH . J 6 HOH H 117 617 169 HOH HOH . J 6 HOH H 118 618 166 HOH HOH . J 6 HOH H 119 619 154 HOH HOH . J 6 HOH H 120 620 96 HOH HOH . J 6 HOH H 121 621 132 HOH HOH . J 6 HOH H 122 622 66 HOH HOH . J 6 HOH H 123 623 168 HOH HOH . J 6 HOH H 124 624 161 HOH HOH . J 6 HOH H 125 625 159 HOH HOH . J 6 HOH H 126 626 123 HOH HOH . J 6 HOH H 127 627 151 HOH HOH . J 6 HOH H 128 628 122 HOH HOH . J 6 HOH H 129 629 162 HOH HOH . J 6 HOH H 130 630 75 HOH HOH . J 6 HOH H 131 631 116 HOH HOH . J 6 HOH H 132 632 164 HOH HOH . J 6 HOH H 133 633 68 HOH HOH . J 6 HOH H 134 634 54 HOH HOH . J 6 HOH H 135 635 128 HOH HOH . J 6 HOH H 136 636 105 HOH HOH . J 6 HOH H 137 637 165 HOH HOH . J 6 HOH H 138 638 150 HOH HOH . J 6 HOH H 139 639 103 HOH HOH . J 6 HOH H 140 640 171 HOH HOH . J 6 HOH H 141 641 100 HOH HOH . J 6 HOH H 142 642 113 HOH HOH . J 6 HOH H 143 643 108 HOH HOH . J 6 HOH H 144 644 118 HOH HOH . J 6 HOH H 145 645 146 HOH HOH . J 6 HOH H 146 646 156 HOH HOH . J 6 HOH H 147 647 143 HOH HOH . J 6 HOH H 148 648 63 HOH HOH . J 6 HOH H 149 649 117 HOH HOH . J 6 HOH H 150 650 144 HOH HOH . J 6 HOH H 151 651 67 HOH HOH . J 6 HOH H 152 652 87 HOH HOH . J 6 HOH H 153 653 141 HOH HOH . J 6 HOH H 154 654 56 HOH HOH . J 6 HOH H 155 655 158 HOH HOH . J 6 HOH H 156 656 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 31.517 50.756 -27.346 1 56.18 ? C1 GOL 407 H 1 HETATM 2 O O1 GOL . . . H 5 31.274 51.736 -26.353 0.67 58.8 ? O1 GOL 407 H 1 HETATM 3 C C2 GOL . . . H 5 31.271 51.437 -28.716 0.46 60.02 ? C2 GOL 407 H 1 HETATM 4 O O2 GOL . . . H 5 31.808 52.721 -28.777 0.81 68.73 ? O2 GOL 407 H 1 HETATM 5 C C3 GOL . . . H 5 31.901 50.487 -29.759 1 54.48 ? C3 GOL 407 H 1 HETATM 6 O O3 GOL . . . H 5 31.673 51.083 -31.022 0.84 61.04 ? O3 GOL 407 H 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #