data_7MCQ
#
_model_server_result.job_id            odcA5hqI9secctSFOnlFhQ 
_model_server_result.datetime_utc      '2024-10-15 11:20:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mcq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    7MCQ 
#
_exptl.entry_id    7MCQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              322.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MCQ 
_cell.length_a            104.354 
_cell.length_b            104.354 
_cell.length_c            287.362 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MCQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    'P 4cw 2c' 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 71.8405 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O HIS 9 A HIS 9 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc2 A O GLY 11 A GLY 11 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? 
metalc ? metalc3 B O HIS 9 H HIS 9 1_555 J NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc4 B O GLY 11 H GLY 11 1_555 J NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? 
#
_chem_comp.formula           'C10 H15 N2 O8 P' 
_chem_comp.formula_weight    322.208 
_chem_comp.id                IK2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IK2 doub 152 n y 
N1 C6 IK2 sing 153 n y 
C2 C2A IK2 sing 154 n n 
C2 C3 IK2 sing 155 n y 
C2A H2A1 IK2 sing 156 n n 
C2A H2A2 IK2 sing 157 n n 
C2A H2A3 IK2 sing 158 n n 
C3 O3 IK2 sing 159 n n 
C3 C4 IK2 doub 160 n y 
O3 HO3 IK2 sing 161 n n 
C4 C4A IK2 sing 162 n n 
C4 C5 IK2 sing 163 n y 
C4A N4A IK2 sing 164 n n 
C4A H4A1 IK2 sing 165 n n 
C4A H4A2 IK2 sing 166 n n 
N4A OX IK2 sing 167 n n 
N4A HNA IK2 sing 168 n n 
OX C1' IK2 sing 169 n n 
C1' C2' IK2 sing 170 n n 
C1' "H1'1" IK2 sing 171 n n 
C1' "H1'2" IK2 sing 172 n n 
C2' O1' IK2 doub 173 n n 
C2' O2' IK2 sing 174 n n 
O2' HO2 IK2 sing 175 n n 
C5 C6 IK2 doub 176 n y 
C5 C5A IK2 sing 177 n n 
C6 H6 IK2 sing 178 n n 
C5A O4P IK2 sing 179 n n 
C5A H5A1 IK2 sing 180 n n 
C5A H5A2 IK2 sing 181 n n 
O4P P IK2 sing 182 n n 
P O1P IK2 doub 183 n n 
P O2P IK2 sing 184 n n 
P O3P IK2 sing 185 n n 
O2P HOP2 IK2 sing 186 n n 
O3P HOP3 IK2 sing 187 n n 
#
_atom_sites.entry_id                     7MCQ 
_atom_sites.fract_transf_matrix[1][1]    0.009583 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IK2 A 1 401 401 IK2 IK2 . 
D 3 NA A 1 402 1 NA NA . 
E 3 NA A 1 403 2 NA NA . 
F 4 GOL A 1 404 1 GOL GOL . 
G 4 GOL A 1 405 2 GOL GOL . 
H 2 IK2 H 1 401 401 IK2 IK2 . 
I 3 NA H 1 402 3 NA NA . 
J 3 NA H 1 403 4 NA NA . 
K 4 GOL H 1 404 3 GOL GOL . 
L 4 GOL H 1 405 4 GOL GOL . 
M 5 HOH A 1 501 27 HOH HOH . 
M 5 HOH A 2 502 22 HOH HOH . 
M 5 HOH A 3 503 34 HOH HOH . 
M 5 HOH A 4 504 57 HOH HOH . 
M 5 HOH A 5 505 28 HOH HOH . 
M 5 HOH A 6 506 36 HOH HOH . 
M 5 HOH A 7 507 5 HOH HOH . 
M 5 HOH A 8 508 84 HOH HOH . 
M 5 HOH A 9 509 3 HOH HOH . 
M 5 HOH A 10 510 40 HOH HOH . 
M 5 HOH A 11 511 26 HOH HOH . 
M 5 HOH A 12 512 17 HOH HOH . 
M 5 HOH A 13 513 21 HOH HOH . 
M 5 HOH A 14 514 6 HOH HOH . 
M 5 HOH A 15 515 91 HOH HOH . 
M 5 HOH A 16 516 1 HOH HOH . 
M 5 HOH A 17 517 16 HOH HOH . 
M 5 HOH A 18 518 11 HOH HOH . 
M 5 HOH A 19 519 35 HOH HOH . 
M 5 HOH A 20 520 8 HOH HOH . 
M 5 HOH A 21 521 7 HOH HOH . 
M 5 HOH A 22 522 79 HOH HOH . 
M 5 HOH A 23 523 2 HOH HOH . 
M 5 HOH A 24 524 77 HOH HOH . 
M 5 HOH A 25 525 66 HOH HOH . 
M 5 HOH A 26 526 83 HOH HOH . 
M 5 HOH A 27 527 65 HOH HOH . 
M 5 HOH A 28 528 78 HOH HOH . 
M 5 HOH A 29 529 59 HOH HOH . 
M 5 HOH A 30 530 96 HOH HOH . 
M 5 HOH A 31 531 13 HOH HOH . 
M 5 HOH A 32 532 10 HOH HOH . 
M 5 HOH A 33 533 68 HOH HOH . 
M 5 HOH A 34 534 64 HOH HOH . 
M 5 HOH A 35 535 81 HOH HOH . 
M 5 HOH A 36 536 61 HOH HOH . 
M 5 HOH A 37 537 18 HOH HOH . 
M 5 HOH A 38 538 85 HOH HOH . 
M 5 HOH A 39 539 23 HOH HOH . 
M 5 HOH A 40 540 80 HOH HOH . 
M 5 HOH A 41 541 70 HOH HOH . 
M 5 HOH A 42 542 69 HOH HOH . 
M 5 HOH A 43 543 12 HOH HOH . 
M 5 HOH A 44 544 14 HOH HOH . 
M 5 HOH A 45 545 39 HOH HOH . 
M 5 HOH A 46 546 82 HOH HOH . 
M 5 HOH A 47 547 75 HOH HOH . 
M 5 HOH A 48 548 60 HOH HOH . 
N 5 HOH H 1 501 63 HOH HOH . 
N 5 HOH H 2 502 46 HOH HOH . 
N 5 HOH H 3 503 58 HOH HOH . 
N 5 HOH H 4 504 95 HOH HOH . 
N 5 HOH H 5 505 86 HOH HOH . 
N 5 HOH H 6 506 41 HOH HOH . 
N 5 HOH H 7 507 9 HOH HOH . 
N 5 HOH H 8 508 92 HOH HOH . 
N 5 HOH H 9 509 47 HOH HOH . 
N 5 HOH H 10 510 93 HOH HOH . 
N 5 HOH H 11 511 67 HOH HOH . 
N 5 HOH H 12 512 88 HOH HOH . 
N 5 HOH H 13 513 51 HOH HOH . 
N 5 HOH H 14 514 45 HOH HOH . 
N 5 HOH H 15 515 15 HOH HOH . 
N 5 HOH H 16 516 87 HOH HOH . 
N 5 HOH H 17 517 72 HOH HOH . 
N 5 HOH H 18 518 42 HOH HOH . 
N 5 HOH H 19 519 32 HOH HOH . 
N 5 HOH H 20 520 56 HOH HOH . 
N 5 HOH H 21 521 54 HOH HOH . 
N 5 HOH H 22 522 71 HOH HOH . 
N 5 HOH H 23 523 31 HOH HOH . 
N 5 HOH H 24 524 37 HOH HOH . 
N 5 HOH H 25 525 74 HOH HOH . 
N 5 HOH H 26 526 55 HOH HOH . 
N 5 HOH H 27 527 48 HOH HOH . 
N 5 HOH H 28 528 94 HOH HOH . 
N 5 HOH H 29 529 89 HOH HOH . 
N 5 HOH H 30 530 44 HOH HOH . 
N 5 HOH H 31 531 73 HOH HOH . 
N 5 HOH H 32 532 20 HOH HOH . 
N 5 HOH H 33 533 62 HOH HOH . 
N 5 HOH H 34 534 53 HOH HOH . 
N 5 HOH H 35 535 90 HOH HOH . 
N 5 HOH H 36 536 50 HOH HOH . 
N 5 HOH H 37 537 38 HOH HOH . 
N 5 HOH H 38 538 19 HOH HOH . 
N 5 HOH H 39 539 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IK2 . . . H 2 13.012 20.589 14.815 1 34.01 ? N1 IK2 401 H 1 
HETATM 2 C C2 IK2 . . . H 2 11.759 20.728 15.337 1 36.74 ? C2 IK2 401 H 1 
HETATM 3 C C2A IK2 . . . H 2 10.763 19.626 15.052 1 29.29 ? C2A IK2 401 H 1 
HETATM 4 C C3 IK2 . . . H 2 11.386 21.84 16.115 1 35.93 ? C3 IK2 401 H 1 
HETATM 5 O O3 IK2 . . . H 2 10.131 21.963 16.623 1 36.1 ? O3 IK2 401 H 1 
HETATM 6 C C4 IK2 . . . H 2 12.419 22.904 16.364 1 37.71 ? C4 IK2 401 H 1 
HETATM 7 C C4A IK2 . . . H 2 12.231 24.148 17.164 1 39.38 ? C4A IK2 401 H 1 
HETATM 8 N N4A IK2 . . . H 2 10.897 24.225 17.754 1 43.49 ? N4A IK2 401 H 1 
HETATM 9 O OX IK2 . . . H 2 10.751 25.427 18.564 1 56.93 ? OX IK2 401 H 1 
HETATM 10 C C1' IK2 . . . H 2 9.541 26.109 18.951 1 47.49 ? C1' IK2 401 H 1 
HETATM 11 C C2' IK2 . . . H 2 8.3 25.254 18.713 1 51.89 ? C2' IK2 401 H 1 
HETATM 12 O O1' IK2 . . . H 2 8.07 24.73 17.626 1 46.69 ? O1' IK2 401 H 1 
HETATM 13 O O2' IK2 . . . H 2 7.41 25.101 19.686 1 49.27 ? O2' IK2 401 H 1 
HETATM 14 C C5 IK2 . . . H 2 13.75 22.652 15.74 1 37.79 ? C5 IK2 401 H 1 
HETATM 15 C C6 IK2 . . . H 2 13.981 21.507 14.992 1 33.84 ? C6 IK2 401 H 1 
HETATM 16 C C5A IK2 . . . H 2 14.829 23.7 15.957 1 37.88 ? C5A IK2 401 H 1 
HETATM 17 O O4P IK2 . . . H 2 15.301 23.619 17.306 1 39.99 ? O4P IK2 401 H 1 
HETATM 18 P P IK2 . . . H 2 15.958 24.854 18.114 1 42.38 ? P IK2 401 H 1 
HETATM 19 O O1P IK2 . . . H 2 16.946 25.605 17.248 1 34.99 ? O1P IK2 401 H 1 
HETATM 20 O O2P IK2 . . . H 2 14.875 25.792 18.593 1 34.62 ? O2P IK2 401 H 1 
HETATM 21 O O3P IK2 . . . H 2 16.633 24.207 19.298 1 39.7 ? O3P IK2 401 H 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#