data_7MCQ # _model_server_result.job_id WVBhFj5lTMjkV4L2g0v53A _model_server_result.datetime_utc '2024-11-28 12:55:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 7MCQ # _exptl.entry_id 7MCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MCQ _cell.length_a 104.354 _cell.length_b 104.354 _cell.length_c 287.362 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall 'P 4cw 2c' _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 71.8405 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 9 A HIS 9 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc2 A O GLY 11 A GLY 11 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc3 B O HIS 9 H HIS 9 1_555 J NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc4 B O GLY 11 H GLY 11 1_555 J NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MCQ _atom_sites.fract_transf_matrix[1][1] 0.009583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IK2 A 1 401 401 IK2 IK2 . D 3 NA A 1 402 1 NA NA . E 3 NA A 1 403 2 NA NA . F 4 GOL A 1 404 1 GOL GOL . G 4 GOL A 1 405 2 GOL GOL . H 2 IK2 H 1 401 401 IK2 IK2 . I 3 NA H 1 402 3 NA NA . J 3 NA H 1 403 4 NA NA . K 4 GOL H 1 404 3 GOL GOL . L 4 GOL H 1 405 4 GOL GOL . M 5 HOH A 1 501 27 HOH HOH . M 5 HOH A 2 502 22 HOH HOH . M 5 HOH A 3 503 34 HOH HOH . M 5 HOH A 4 504 57 HOH HOH . M 5 HOH A 5 505 28 HOH HOH . M 5 HOH A 6 506 36 HOH HOH . M 5 HOH A 7 507 5 HOH HOH . M 5 HOH A 8 508 84 HOH HOH . M 5 HOH A 9 509 3 HOH HOH . M 5 HOH A 10 510 40 HOH HOH . M 5 HOH A 11 511 26 HOH HOH . M 5 HOH A 12 512 17 HOH HOH . M 5 HOH A 13 513 21 HOH HOH . M 5 HOH A 14 514 6 HOH HOH . M 5 HOH A 15 515 91 HOH HOH . M 5 HOH A 16 516 1 HOH HOH . M 5 HOH A 17 517 16 HOH HOH . M 5 HOH A 18 518 11 HOH HOH . M 5 HOH A 19 519 35 HOH HOH . M 5 HOH A 20 520 8 HOH HOH . M 5 HOH A 21 521 7 HOH HOH . M 5 HOH A 22 522 79 HOH HOH . M 5 HOH A 23 523 2 HOH HOH . M 5 HOH A 24 524 77 HOH HOH . M 5 HOH A 25 525 66 HOH HOH . M 5 HOH A 26 526 83 HOH HOH . M 5 HOH A 27 527 65 HOH HOH . M 5 HOH A 28 528 78 HOH HOH . M 5 HOH A 29 529 59 HOH HOH . M 5 HOH A 30 530 96 HOH HOH . M 5 HOH A 31 531 13 HOH HOH . M 5 HOH A 32 532 10 HOH HOH . M 5 HOH A 33 533 68 HOH HOH . M 5 HOH A 34 534 64 HOH HOH . M 5 HOH A 35 535 81 HOH HOH . M 5 HOH A 36 536 61 HOH HOH . M 5 HOH A 37 537 18 HOH HOH . M 5 HOH A 38 538 85 HOH HOH . M 5 HOH A 39 539 23 HOH HOH . M 5 HOH A 40 540 80 HOH HOH . M 5 HOH A 41 541 70 HOH HOH . M 5 HOH A 42 542 69 HOH HOH . M 5 HOH A 43 543 12 HOH HOH . M 5 HOH A 44 544 14 HOH HOH . M 5 HOH A 45 545 39 HOH HOH . M 5 HOH A 46 546 82 HOH HOH . M 5 HOH A 47 547 75 HOH HOH . M 5 HOH A 48 548 60 HOH HOH . N 5 HOH H 1 501 63 HOH HOH . N 5 HOH H 2 502 46 HOH HOH . N 5 HOH H 3 503 58 HOH HOH . N 5 HOH H 4 504 95 HOH HOH . N 5 HOH H 5 505 86 HOH HOH . N 5 HOH H 6 506 41 HOH HOH . N 5 HOH H 7 507 9 HOH HOH . N 5 HOH H 8 508 92 HOH HOH . N 5 HOH H 9 509 47 HOH HOH . N 5 HOH H 10 510 93 HOH HOH . N 5 HOH H 11 511 67 HOH HOH . N 5 HOH H 12 512 88 HOH HOH . N 5 HOH H 13 513 51 HOH HOH . N 5 HOH H 14 514 45 HOH HOH . N 5 HOH H 15 515 15 HOH HOH . N 5 HOH H 16 516 87 HOH HOH . N 5 HOH H 17 517 72 HOH HOH . N 5 HOH H 18 518 42 HOH HOH . N 5 HOH H 19 519 32 HOH HOH . N 5 HOH H 20 520 56 HOH HOH . N 5 HOH H 21 521 54 HOH HOH . N 5 HOH H 22 522 71 HOH HOH . N 5 HOH H 23 523 31 HOH HOH . N 5 HOH H 24 524 37 HOH HOH . N 5 HOH H 25 525 74 HOH HOH . N 5 HOH H 26 526 55 HOH HOH . N 5 HOH H 27 527 48 HOH HOH . N 5 HOH H 28 528 94 HOH HOH . N 5 HOH H 29 529 89 HOH HOH . N 5 HOH H 30 530 44 HOH HOH . N 5 HOH H 31 531 73 HOH HOH . N 5 HOH H 32 532 20 HOH HOH . N 5 HOH H 33 533 62 HOH HOH . N 5 HOH H 34 534 53 HOH HOH . N 5 HOH H 35 535 90 HOH HOH . N 5 HOH H 36 536 50 HOH HOH . N 5 HOH H 37 537 38 HOH HOH . N 5 HOH H 38 538 19 HOH HOH . N 5 HOH H 39 539 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 28.98 _atom_site.Cartn_y 3.72 _atom_site.Cartn_z 30.695 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #