data_7MCQ
#
_model_server_result.job_id            RgLJLSCm8rw-DBpbpYocAQ 
_model_server_result.datetime_utc      '2024-11-28 12:38:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mcq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    7MCQ 
#
_exptl.entry_id    7MCQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MCQ 
_cell.length_a            104.354 
_cell.length_b            104.354 
_cell.length_c            287.362 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MCQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    'P 4cw 2c' 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 71.8405 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O HIS 9 A HIS 9 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc2 A O GLY 11 A GLY 11 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? 
metalc ? metalc3 B O HIS 9 H HIS 9 1_555 J NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc4 B O GLY 11 H GLY 11 1_555 J NA NA . H NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     7MCQ 
_atom_sites.fract_transf_matrix[1][1]    0.009583 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IK2 A 1 401 401 IK2 IK2 . 
D 3 NA A 1 402 1 NA NA . 
E 3 NA A 1 403 2 NA NA . 
F 4 GOL A 1 404 1 GOL GOL . 
G 4 GOL A 1 405 2 GOL GOL . 
H 2 IK2 H 1 401 401 IK2 IK2 . 
I 3 NA H 1 402 3 NA NA . 
J 3 NA H 1 403 4 NA NA . 
K 4 GOL H 1 404 3 GOL GOL . 
L 4 GOL H 1 405 4 GOL GOL . 
M 5 HOH A 1 501 27 HOH HOH . 
M 5 HOH A 2 502 22 HOH HOH . 
M 5 HOH A 3 503 34 HOH HOH . 
M 5 HOH A 4 504 57 HOH HOH . 
M 5 HOH A 5 505 28 HOH HOH . 
M 5 HOH A 6 506 36 HOH HOH . 
M 5 HOH A 7 507 5 HOH HOH . 
M 5 HOH A 8 508 84 HOH HOH . 
M 5 HOH A 9 509 3 HOH HOH . 
M 5 HOH A 10 510 40 HOH HOH . 
M 5 HOH A 11 511 26 HOH HOH . 
M 5 HOH A 12 512 17 HOH HOH . 
M 5 HOH A 13 513 21 HOH HOH . 
M 5 HOH A 14 514 6 HOH HOH . 
M 5 HOH A 15 515 91 HOH HOH . 
M 5 HOH A 16 516 1 HOH HOH . 
M 5 HOH A 17 517 16 HOH HOH . 
M 5 HOH A 18 518 11 HOH HOH . 
M 5 HOH A 19 519 35 HOH HOH . 
M 5 HOH A 20 520 8 HOH HOH . 
M 5 HOH A 21 521 7 HOH HOH . 
M 5 HOH A 22 522 79 HOH HOH . 
M 5 HOH A 23 523 2 HOH HOH . 
M 5 HOH A 24 524 77 HOH HOH . 
M 5 HOH A 25 525 66 HOH HOH . 
M 5 HOH A 26 526 83 HOH HOH . 
M 5 HOH A 27 527 65 HOH HOH . 
M 5 HOH A 28 528 78 HOH HOH . 
M 5 HOH A 29 529 59 HOH HOH . 
M 5 HOH A 30 530 96 HOH HOH . 
M 5 HOH A 31 531 13 HOH HOH . 
M 5 HOH A 32 532 10 HOH HOH . 
M 5 HOH A 33 533 68 HOH HOH . 
M 5 HOH A 34 534 64 HOH HOH . 
M 5 HOH A 35 535 81 HOH HOH . 
M 5 HOH A 36 536 61 HOH HOH . 
M 5 HOH A 37 537 18 HOH HOH . 
M 5 HOH A 38 538 85 HOH HOH . 
M 5 HOH A 39 539 23 HOH HOH . 
M 5 HOH A 40 540 80 HOH HOH . 
M 5 HOH A 41 541 70 HOH HOH . 
M 5 HOH A 42 542 69 HOH HOH . 
M 5 HOH A 43 543 12 HOH HOH . 
M 5 HOH A 44 544 14 HOH HOH . 
M 5 HOH A 45 545 39 HOH HOH . 
M 5 HOH A 46 546 82 HOH HOH . 
M 5 HOH A 47 547 75 HOH HOH . 
M 5 HOH A 48 548 60 HOH HOH . 
N 5 HOH H 1 501 63 HOH HOH . 
N 5 HOH H 2 502 46 HOH HOH . 
N 5 HOH H 3 503 58 HOH HOH . 
N 5 HOH H 4 504 95 HOH HOH . 
N 5 HOH H 5 505 86 HOH HOH . 
N 5 HOH H 6 506 41 HOH HOH . 
N 5 HOH H 7 507 9 HOH HOH . 
N 5 HOH H 8 508 92 HOH HOH . 
N 5 HOH H 9 509 47 HOH HOH . 
N 5 HOH H 10 510 93 HOH HOH . 
N 5 HOH H 11 511 67 HOH HOH . 
N 5 HOH H 12 512 88 HOH HOH . 
N 5 HOH H 13 513 51 HOH HOH . 
N 5 HOH H 14 514 45 HOH HOH . 
N 5 HOH H 15 515 15 HOH HOH . 
N 5 HOH H 16 516 87 HOH HOH . 
N 5 HOH H 17 517 72 HOH HOH . 
N 5 HOH H 18 518 42 HOH HOH . 
N 5 HOH H 19 519 32 HOH HOH . 
N 5 HOH H 20 520 56 HOH HOH . 
N 5 HOH H 21 521 54 HOH HOH . 
N 5 HOH H 22 522 71 HOH HOH . 
N 5 HOH H 23 523 31 HOH HOH . 
N 5 HOH H 24 524 37 HOH HOH . 
N 5 HOH H 25 525 74 HOH HOH . 
N 5 HOH H 26 526 55 HOH HOH . 
N 5 HOH H 27 527 48 HOH HOH . 
N 5 HOH H 28 528 94 HOH HOH . 
N 5 HOH H 29 529 89 HOH HOH . 
N 5 HOH H 30 530 44 HOH HOH . 
N 5 HOH H 31 531 73 HOH HOH . 
N 5 HOH H 32 532 20 HOH HOH . 
N 5 HOH H 33 533 62 HOH HOH . 
N 5 HOH H 34 534 53 HOH HOH . 
N 5 HOH H 35 535 90 HOH HOH . 
N 5 HOH H 36 536 50 HOH HOH . 
N 5 HOH H 37 537 38 HOH HOH . 
N 5 HOH H 38 538 19 HOH HOH . 
N 5 HOH H 39 539 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 16.879 41.762 22.484 0.43 56.79 ? C1 GOL 404 A 1 
HETATM 2 O O1 GOL . . . F 4 17.973 42.642 22.343 1 68.41 ? O1 GOL 404 A 1 
HETATM 3 C C2 GOL . . . F 4 15.625 42.581 22.926 0.43 55.41 ? C2 GOL 404 A 1 
HETATM 4 O O2 GOL . . . F 4 14.473 41.819 22.871 1 52.64 ? O2 GOL 404 A 1 
HETATM 5 C C3 GOL . . . F 4 15.88 43.019 24.376 1 51.77 ? C3 GOL 404 A 1 
HETATM 6 O O3 GOL . . . F 4 14.592 43.142 24.927 0.88 52.92 ? O3 GOL 404 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#