data_7MCU # _model_server_result.job_id WHfCQ7uJXVBXWaTTBMGVgA _model_server_result.datetime_utc '2024-11-30 00:48:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7MCU # _exptl.entry_id 7MCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MCU _cell.length_a 104.89 _cell.length_b 104.89 _cell.length_c 288.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 104.89 104.89 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 104.89 104.89 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N SER 1 H SER 1 1_555 B C4A PLP . H PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A C THR 195 H THR 195 1_555 A N LLP 196 H LLP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LLP 196 H LLP 196 1_555 A N TYR 197 H TYR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A O HIS 9 H HIS 9 1_555 F NA NA . H NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc2 A O GLY 11 H GLY 11 1_555 F NA NA . H NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 E NA NA . H NA 404 1_555 J O HOH . H HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc4 E NA NA . H NA 404 1_555 J O HOH . H HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 E NA NA . H NA 404 1_555 J O HOH . H HOH 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc6 E NA NA . H NA 404 1_555 J O HOH . H HOH 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc7 E NA NA . H NA 404 1_555 J O HOH . H HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc8 F NA NA . H NA 405 1_555 J O HOH . H HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc9 F NA NA . H NA 405 1_555 J O HOH . H HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc10 F NA NA . H NA 405 1_555 J O HOH . H HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc11 F NA NA . H NA 405 1_555 J O HOH . H HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 7MCU _atom_sites.fract_transf_matrix[1][1] 0.009534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP H 1 401 401 PLP PLP . C 3 YXA H 1 402 501 YXA QP5 . D 4 FLC H 1 403 601 FLC flc . E 5 NA H 1 404 1 NA NA . F 5 NA H 1 405 2 NA NA . G 6 GOL H 1 406 3 GOL GOL . H 6 GOL H 1 407 4 GOL GOL . I 6 GOL H 1 408 5 GOL GOL . J 7 HOH H 1 501 101 HOH HOH . J 7 HOH H 2 502 16 HOH HOH . J 7 HOH H 3 503 232 HOH HOH . J 7 HOH H 4 504 31 HOH HOH . J 7 HOH H 5 505 66 HOH HOH . J 7 HOH H 6 506 108 HOH HOH . J 7 HOH H 7 507 60 HOH HOH . J 7 HOH H 8 508 9 HOH HOH . J 7 HOH H 9 509 6 HOH HOH . J 7 HOH H 10 510 57 HOH HOH . J 7 HOH H 11 511 79 HOH HOH . J 7 HOH H 12 512 19 HOH HOH . J 7 HOH H 13 513 99 HOH HOH . J 7 HOH H 14 514 80 HOH HOH . J 7 HOH H 15 515 12 HOH HOH . J 7 HOH H 16 516 123 HOH HOH . J 7 HOH H 17 517 159 HOH HOH . J 7 HOH H 18 518 111 HOH HOH . J 7 HOH H 19 519 15 HOH HOH . J 7 HOH H 20 520 78 HOH HOH . J 7 HOH H 21 521 44 HOH HOH . J 7 HOH H 22 522 35 HOH HOH . J 7 HOH H 23 523 139 HOH HOH . J 7 HOH H 24 524 5 HOH HOH . J 7 HOH H 25 525 153 HOH HOH . J 7 HOH H 26 526 27 HOH HOH . J 7 HOH H 27 527 4 HOH HOH . J 7 HOH H 28 528 62 HOH HOH . J 7 HOH H 29 529 18 HOH HOH . J 7 HOH H 30 530 11 HOH HOH . J 7 HOH H 31 531 50 HOH HOH . J 7 HOH H 32 532 131 HOH HOH . J 7 HOH H 33 533 104 HOH HOH . J 7 HOH H 34 534 235 HOH HOH . J 7 HOH H 35 535 172 HOH HOH . J 7 HOH H 36 536 82 HOH HOH . J 7 HOH H 37 537 59 HOH HOH . J 7 HOH H 38 538 23 HOH HOH . J 7 HOH H 39 539 21 HOH HOH . J 7 HOH H 40 540 64 HOH HOH . J 7 HOH H 41 541 7 HOH HOH . J 7 HOH H 42 542 83 HOH HOH . J 7 HOH H 43 543 1 HOH HOH . J 7 HOH H 44 544 17 HOH HOH . J 7 HOH H 45 545 176 HOH HOH . J 7 HOH H 46 546 68 HOH HOH . J 7 HOH H 47 547 142 HOH HOH . J 7 HOH H 48 548 236 HOH HOH . J 7 HOH H 49 549 53 HOH HOH . J 7 HOH H 50 550 46 HOH HOH . J 7 HOH H 51 551 205 HOH HOH . J 7 HOH H 52 552 29 HOH HOH . J 7 HOH H 53 553 98 HOH HOH . J 7 HOH H 54 554 207 HOH HOH . J 7 HOH H 55 555 30 HOH HOH . J 7 HOH H 56 556 28 HOH HOH . J 7 HOH H 57 557 8 HOH HOH . J 7 HOH H 58 558 77 HOH HOH . J 7 HOH H 59 559 92 HOH HOH . J 7 HOH H 60 560 141 HOH HOH . J 7 HOH H 61 561 84 HOH HOH . J 7 HOH H 62 562 10 HOH HOH . J 7 HOH H 63 563 106 HOH HOH . J 7 HOH H 64 564 45 HOH HOH . J 7 HOH H 65 565 70 HOH HOH . J 7 HOH H 66 566 238 HOH HOH . J 7 HOH H 67 567 136 HOH HOH . J 7 HOH H 68 568 47 HOH HOH . J 7 HOH H 69 569 25 HOH HOH . J 7 HOH H 70 570 39 HOH HOH . J 7 HOH H 71 571 55 HOH HOH . J 7 HOH H 72 572 69 HOH HOH . J 7 HOH H 73 573 175 HOH HOH . J 7 HOH H 74 574 51 HOH HOH . J 7 HOH H 75 575 240 HOH HOH . J 7 HOH H 76 576 109 HOH HOH . J 7 HOH H 77 577 65 HOH HOH . J 7 HOH H 78 578 34 HOH HOH . J 7 HOH H 79 579 76 HOH HOH . J 7 HOH H 80 580 121 HOH HOH . J 7 HOH H 81 581 134 HOH HOH . J 7 HOH H 82 582 2 HOH HOH . J 7 HOH H 83 583 81 HOH HOH . J 7 HOH H 84 584 43 HOH HOH . J 7 HOH H 85 585 110 HOH HOH . J 7 HOH H 86 586 91 HOH HOH . J 7 HOH H 87 587 200 HOH HOH . J 7 HOH H 88 588 67 HOH HOH . J 7 HOH H 89 589 42 HOH HOH . J 7 HOH H 90 590 41 HOH HOH . J 7 HOH H 91 591 33 HOH HOH . J 7 HOH H 92 592 13 HOH HOH . J 7 HOH H 93 593 244 HOH HOH . J 7 HOH H 94 594 95 HOH HOH . J 7 HOH H 95 595 74 HOH HOH . J 7 HOH H 96 596 239 HOH HOH . J 7 HOH H 97 597 37 HOH HOH . J 7 HOH H 98 598 14 HOH HOH . J 7 HOH H 99 599 115 HOH HOH . J 7 HOH H 100 600 38 HOH HOH . J 7 HOH H 101 601 72 HOH HOH . J 7 HOH H 102 602 89 HOH HOH . J 7 HOH H 103 603 130 HOH HOH . J 7 HOH H 104 604 36 HOH HOH . J 7 HOH H 105 605 183 HOH HOH . J 7 HOH H 106 606 132 HOH HOH . J 7 HOH H 107 607 61 HOH HOH . J 7 HOH H 108 608 96 HOH HOH . J 7 HOH H 109 609 22 HOH HOH . J 7 HOH H 110 610 40 HOH HOH . J 7 HOH H 111 611 88 HOH HOH . J 7 HOH H 112 612 24 HOH HOH . J 7 HOH H 113 613 179 HOH HOH . J 7 HOH H 114 614 173 HOH HOH . J 7 HOH H 115 615 135 HOH HOH . J 7 HOH H 116 616 75 HOH HOH . J 7 HOH H 117 617 20 HOH HOH . J 7 HOH H 118 618 52 HOH HOH . J 7 HOH H 119 619 100 HOH HOH . J 7 HOH H 120 620 56 HOH HOH . J 7 HOH H 121 621 149 HOH HOH . J 7 HOH H 122 622 229 HOH HOH . J 7 HOH H 123 623 204 HOH HOH . J 7 HOH H 124 624 71 HOH HOH . J 7 HOH H 125 625 48 HOH HOH . J 7 HOH H 126 626 192 HOH HOH . J 7 HOH H 127 627 124 HOH HOH . J 7 HOH H 128 628 184 HOH HOH . J 7 HOH H 129 629 114 HOH HOH . J 7 HOH H 130 630 165 HOH HOH . J 7 HOH H 131 631 90 HOH HOH . J 7 HOH H 132 632 138 HOH HOH . J 7 HOH H 133 633 211 HOH HOH . J 7 HOH H 134 634 105 HOH HOH . J 7 HOH H 135 635 87 HOH HOH . J 7 HOH H 136 636 63 HOH HOH . J 7 HOH H 137 637 128 HOH HOH . J 7 HOH H 138 638 162 HOH HOH . J 7 HOH H 139 639 32 HOH HOH . J 7 HOH H 140 640 97 HOH HOH . J 7 HOH H 141 641 206 HOH HOH . J 7 HOH H 142 642 168 HOH HOH . J 7 HOH H 143 643 127 HOH HOH . J 7 HOH H 144 644 73 HOH HOH . J 7 HOH H 145 645 163 HOH HOH . J 7 HOH H 146 646 49 HOH HOH . J 7 HOH H 147 647 145 HOH HOH . J 7 HOH H 148 648 117 HOH HOH . J 7 HOH H 149 649 186 HOH HOH . J 7 HOH H 150 650 226 HOH HOH . J 7 HOH H 151 651 171 HOH HOH . J 7 HOH H 152 652 146 HOH HOH . J 7 HOH H 153 653 157 HOH HOH . J 7 HOH H 154 654 194 HOH HOH . J 7 HOH H 155 655 214 HOH HOH . J 7 HOH H 156 656 166 HOH HOH . J 7 HOH H 157 657 156 HOH HOH . J 7 HOH H 158 658 202 HOH HOH . J 7 HOH H 159 659 208 HOH HOH . J 7 HOH H 160 660 116 HOH HOH . J 7 HOH H 161 661 85 HOH HOH . J 7 HOH H 162 662 245 HOH HOH . J 7 HOH H 163 663 147 HOH HOH . J 7 HOH H 164 664 181 HOH HOH . J 7 HOH H 165 665 122 HOH HOH . J 7 HOH H 166 666 201 HOH HOH . J 7 HOH H 167 667 144 HOH HOH . J 7 HOH H 168 668 233 HOH HOH . J 7 HOH H 169 669 107 HOH HOH . J 7 HOH H 170 670 216 HOH HOH . J 7 HOH H 171 671 118 HOH HOH . J 7 HOH H 172 672 113 HOH HOH . J 7 HOH H 173 673 249 HOH HOH . J 7 HOH H 174 674 58 HOH HOH . J 7 HOH H 175 675 177 HOH HOH . J 7 HOH H 176 676 188 HOH HOH . J 7 HOH H 177 677 126 HOH HOH . J 7 HOH H 178 678 225 HOH HOH . J 7 HOH H 179 679 234 HOH HOH . J 7 HOH H 180 680 158 HOH HOH . J 7 HOH H 181 681 243 HOH HOH . J 7 HOH H 182 682 120 HOH HOH . J 7 HOH H 183 683 219 HOH HOH . J 7 HOH H 184 684 164 HOH HOH . J 7 HOH H 185 685 198 HOH HOH . J 7 HOH H 186 686 137 HOH HOH . J 7 HOH H 187 687 152 HOH HOH . J 7 HOH H 188 688 189 HOH HOH . J 7 HOH H 189 689 199 HOH HOH . J 7 HOH H 190 690 185 HOH HOH . J 7 HOH H 191 691 215 HOH HOH . J 7 HOH H 192 692 93 HOH HOH . J 7 HOH H 193 693 217 HOH HOH . J 7 HOH H 194 694 119 HOH HOH . J 7 HOH H 195 695 227 HOH HOH . J 7 HOH H 196 696 213 HOH HOH . J 7 HOH H 197 697 182 HOH HOH . J 7 HOH H 198 698 218 HOH HOH . J 7 HOH H 199 699 196 HOH HOH . J 7 HOH H 200 700 151 HOH HOH . J 7 HOH H 201 701 148 HOH HOH . J 7 HOH H 202 702 237 HOH HOH . J 7 HOH H 203 703 190 HOH HOH . J 7 HOH H 204 704 228 HOH HOH . J 7 HOH H 205 705 230 HOH HOH . J 7 HOH H 206 706 103 HOH HOH . J 7 HOH H 207 707 242 HOH HOH . J 7 HOH H 208 708 26 HOH HOH . J 7 HOH H 209 709 180 HOH HOH . J 7 HOH H 210 710 224 HOH HOH . J 7 HOH H 211 711 161 HOH HOH . J 7 HOH H 212 712 191 HOH HOH . J 7 HOH H 213 713 247 HOH HOH . J 7 HOH H 214 714 160 HOH HOH . J 7 HOH H 215 715 195 HOH HOH . J 7 HOH H 216 716 112 HOH HOH . J 7 HOH H 217 717 220 HOH HOH . J 7 HOH H 218 718 193 HOH HOH . J 7 HOH H 219 719 212 HOH HOH . J 7 HOH H 220 720 102 HOH HOH . J 7 HOH H 221 721 203 HOH HOH . J 7 HOH H 222 722 178 HOH HOH . J 7 HOH H 223 723 210 HOH HOH . J 7 HOH H 224 724 129 HOH HOH . J 7 HOH H 225 725 94 HOH HOH . J 7 HOH H 226 726 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 6 65.154 37.769 -12.787 0.96 43.91 ? C1 GOL 407 H 1 HETATM 2 O O1 GOL . . . H 6 65.678 37.944 -14.07 0.42 54.39 ? O1 GOL 407 H 1 HETATM 3 C C2 GOL . . . H 6 63.675 37.349 -12.981 0.8 58.7 ? C2 GOL 407 H 1 HETATM 4 O O2 GOL . . . H 6 63.044 37.076 -11.765 0.93 38.89 ? O2 GOL 407 H 1 HETATM 5 C C3 GOL . . . H 6 63.014 38.527 -13.804 0.73 56.95 ? C3 GOL 407 H 1 HETATM 6 O O3 GOL . . . H 6 61.623 38.252 -13.961 1 53.34 ? O3 GOL 407 H 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #