data_7MD2
#
_model_server_result.job_id            mwFMklB1G7ezoUfI1cpCxw 
_model_server_result.datetime_utc      '2024-11-14 19:13:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7md2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":600}' 
#
_entry.id    7MD2 
#
_exptl.entry_id    7MD2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MD2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 K N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 178 A THR 178 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 I O3G ATP . A ATP 600 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? 
metalc ? metalc3 I O2B ATP . A ATP 600 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc4 I O3A ATP . A ATP 600 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc5 B OG1 THR 178 B THR 178 1_555 L MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 K O1B ATP . B ATP 600 1_555 L MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc7 K O3B ATP . B ATP 600 1_555 L MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc8 C OG1 THR 178 C THR 178 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc9 M O1G ATP . C ATP 600 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? 
metalc ? metalc10 M O1B ATP . C ATP 600 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7MD2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 ATP A 1 600 600 ATP ATP . 
J 6 MG A 1 601 601 MG MG . 
K 5 ATP B 1 600 600 ATP ATP . 
L 6 MG B 1 601 601 MG MG . 
M 5 ATP C 1 600 600 ATP ATP . 
N 6 MG C 1 601 601 MG MG . 
O 7 PO4 F 1 600 600 PO4 PO4 . 
P 8 ZHD G 1 301 1 ZHD LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . K 5 142.058 144.551 124.552 1 51.58 ? PG ATP 600 B 1 
HETATM 2 O O1G ATP . . . K 5 141.905 143.696 125.784 1 51.58 ? O1G ATP 600 B 1 
HETATM 3 O O2G ATP . . . K 5 142.468 143.789 123.319 1 51.58 ? O2G ATP 600 B 1 
HETATM 4 O O3G ATP . . . K 5 142.808 145.839 124.762 1 51.58 ? O3G ATP 600 B 1 
HETATM 5 P PB ATP . . . K 5 139.545 145.379 125.399 1 51.58 ? PB ATP 600 B 1 
HETATM 6 O O1B ATP . . . K 5 138.446 146.229 124.814 1 51.58 ? O1B ATP 600 B 1 
HETATM 7 O O2B ATP . . . K 5 140.318 145.868 126.591 1 51.58 ? O2B ATP 600 B 1 
HETATM 8 O O3B ATP . . . K 5 140.564 145.021 124.214 1 51.58 ? O3B ATP 600 B 1 
HETATM 9 P PA ATP . . . K 5 137.852 143.779 126.896 1 51.58 ? PA ATP 600 B 1 
HETATM 10 O O1A ATP . . . K 5 136.516 143.471 126.284 1 51.58 ? O1A ATP 600 B 1 
HETATM 11 O O2A ATP . . . K 5 138.033 144.946 127.817 1 51.58 ? O2A ATP 600 B 1 
HETATM 12 O O3A ATP . . . K 5 138.944 143.93 125.739 1 51.58 ? O3A ATP 600 B 1 
HETATM 13 O O5' ATP . . . K 5 138.338 142.472 127.685 1 51.58 ? O5' ATP 600 B 1 
HETATM 14 C C5' ATP . . . K 5 138.302 142.539 129.101 1 51.58 ? C5' ATP 600 B 1 
HETATM 15 C C4' ATP . . . K 5 138.059 141.201 129.784 1 51.58 ? C4' ATP 600 B 1 
HETATM 16 O O4' ATP . . . K 5 137.468 141.516 131.037 1 51.58 ? O4' ATP 600 B 1 
HETATM 17 C C3' ATP . . . K 5 137.126 140.233 129.078 1 51.58 ? C3' ATP 600 B 1 
HETATM 18 O O3' ATP . . . K 5 137.716 138.931 129.07 1 51.58 ? O3' ATP 600 B 1 
HETATM 19 C C2' ATP . . . K 5 135.837 140.23 129.864 1 51.58 ? C2' ATP 600 B 1 
HETATM 20 O O2' ATP . . . K 5 135.383 138.904 130.162 1 51.58 ? O2' ATP 600 B 1 
HETATM 21 C C1' ATP . . . K 5 136.15 140.997 131.136 1 51.58 ? C1' ATP 600 B 1 
HETATM 22 N N9 ATP . . . K 5 135.218 142.124 131.35 1 51.58 ? N9 ATP 600 B 1 
HETATM 23 C C8 ATP . . . K 5 134.93 143.102 130.476 1 51.58 ? C8 ATP 600 B 1 
HETATM 24 N N7 ATP . . . K 5 134.033 143.966 131.009 1 51.58 ? N7 ATP 600 B 1 
HETATM 25 C C5 ATP . . . K 5 133.743 143.536 132.245 1 51.58 ? C5 ATP 600 B 1 
HETATM 26 C C6 ATP . . . K 5 132.872 143.983 133.348 1 51.58 ? C6 ATP 600 B 1 
HETATM 27 N N6 ATP . . . K 5 132.113 145.098 133.229 1 51.58 ? N6 ATP 600 B 1 
HETATM 28 N N1 ATP . . . K 5 132.863 143.243 134.474 1 51.58 ? N1 ATP 600 B 1 
HETATM 29 C C2 ATP . . . K 5 133.611 142.137 134.606 1 51.58 ? C2 ATP 600 B 1 
HETATM 30 N N3 ATP . . . K 5 134.418 141.684 133.64 1 51.58 ? N3 ATP 600 B 1 
HETATM 31 C C4 ATP . . . K 5 134.523 142.322 132.46 1 51.58 ? C4 ATP 600 B 1 
HETATM 32 H "H5'1" ATP . . . K 5 137.524 143.24 129.399 1 51.58 ? "H5'1" ATP 600 B 1 
HETATM 33 H "H5'2" ATP . . . K 5 139.253 142.942 129.452 1 51.58 ? "H5'2" ATP 600 B 1 
HETATM 34 H H4' ATP . . . K 5 139.021 140.706 129.943 1 51.58 ? H4' ATP 600 B 1 
HETATM 35 H H3' ATP . . . K 5 136.929 140.575 128.056 1 51.58 ? H3' ATP 600 B 1 
HETATM 36 H HO3' ATP . . . K 5 137.074 138.288 128.727 1 51.58 ? HO3' ATP 600 B 1 
HETATM 37 H H2' ATP . . . K 5 135.076 140.761 129.282 1 51.58 ? H2' ATP 600 B 1 
HETATM 38 H HO2' ATP . . . K 5 134.963 138.519 129.379 1 51.58 ? HO2' ATP 600 B 1 
HETATM 39 H H1' ATP . . . K 5 136.093 140.308 131.986 1 51.58 ? H1' ATP 600 B 1 
HETATM 40 H H8 ATP . . . K 5 135.349 143.192 129.482 1 51.58 ? H8 ATP 600 B 1 
HETATM 41 H HN61 ATP . . . K 5 132.135 145.64 132.376 1 51.58 ? HN61 ATP 600 B 1 
HETATM 42 H HN62 ATP . . . K 5 131.525 145.388 133.996 1 51.58 ? HN62 ATP 600 B 1 
HETATM 43 H H2 ATP . . . K 5 133.56 141.583 135.534 1 51.58 ? H2 ATP 600 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    106 
_model_server_stats.query_time_ms           480 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#