data_7MD6
#
_model_server_result.job_id            xwOjp7fLexWpdIbLUfJTHQ 
_model_server_result.datetime_utc      '2024-10-15 11:26:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7md6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    7MD6 
#
_exptl.entry_id    7MD6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              311.131 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(6-bromo-1H-indol-1-yl)acetyl]glycine 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MD6 
_cell.length_a            104.379 
_cell.length_b            104.379 
_cell.length_c            287.729 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MD6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    'I 4bw 2bw' 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 104.379 104.379 0 
3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 104.379 104.379 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 195 H THR 195 1_555 A N LLP 196 H LLP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C LLP 196 H LLP 196 1_555 A N TYR 197 H TYR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 J NA NA . H NA 409 1_555 L O HOH . H HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc2 J NA NA . H NA 409 1_555 L O HOH . H HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc3 J NA NA . H NA 409 1_555 L O HOH . H HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc4 J NA NA . H NA 409 1_555 L O HOH . H HOH 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc5 J NA NA . H NA 409 1_555 L O HOH . H HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc6 J NA NA . H NA 409 1_555 L O HOH . H HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc7 K NA NA . H NA 410 1_555 L O HOH . H HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc8 K NA NA . H NA 410 1_555 L O HOH . H HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? 
metalc ? metalc9 K NA NA . H NA 410 1_555 L O HOH . H HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
#
_chem_comp.formula           'C12 H11 Br N2 O3' 
_chem_comp.formula_weight    311.131 
_chem_comp.id                LB6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(6-bromo-1H-indol-1-yl)acetyl]glycine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C5 LB6 doub 177 n y 
C4 C9 LB6 sing 178 n y 
C3 C9 LB6 sing 179 n y 
C3 C2 LB6 doub 180 n y 
C5 C6 LB6 sing 181 n y 
C9 C8 LB6 doub 182 n y 
C2 N1 LB6 sing 183 n y 
C6 C7 LB6 doub 184 n y 
C6 BR LB6 sing 185 n n 
C8 N1 LB6 sing 186 n y 
C8 C7 LB6 sing 187 n y 
N1 C10 LB6 sing 188 n n 
C10 C11 LB6 sing 189 n n 
C12 N2 LB6 sing 190 n n 
C12 C13 LB6 sing 191 n n 
N2 C11 LB6 sing 192 n n 
C11 O1 LB6 doub 193 n n 
C13 O3 LB6 doub 194 n n 
C13 O2 LB6 sing 195 n n 
C10 H1 LB6 sing 196 n n 
C10 H2 LB6 sing 197 n n 
C12 H3 LB6 sing 198 n n 
C12 H4 LB6 sing 199 n n 
C2 H5 LB6 sing 200 n n 
C3 H6 LB6 sing 201 n n 
C4 H7 LB6 sing 202 n n 
C5 H8 LB6 sing 203 n n 
C7 H9 LB6 sing 204 n n 
N2 H10 LB6 sing 205 n n 
O2 H11 LB6 sing 206 n n 
#
_atom_sites.entry_id                     7MD6 
_atom_sites.fract_transf_matrix[1][1]    0.00958 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00958 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003475 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LB6 H 1 401 401 LB6 LB6 . 
C 2 LB6 H 1 402 402 LB6 LB6 . 
D 2 LB6 H 1 403 403 LB6 LB6 . 
E 2 LB6 H 1 404 404 LB6 LB6 . 
F 2 LB6 H 1 405 405 LB6 LB6 . 
G 2 LB6 H 1 406 406 LB6 LB6 . 
H 2 LB6 H 1 407 407 LB6 LB6 . 
I 3 FLC H 1 408 801 FLC flc . 
J 4 NA H 1 409 1 NA NA . 
K 4 NA H 1 410 2 NA NA . 
L 5 HOH H 1 501 87 HOH HOH . 
L 5 HOH H 2 502 195 HOH HOH . 
L 5 HOH H 3 503 48 HOH HOH . 
L 5 HOH H 4 504 30 HOH HOH . 
L 5 HOH H 5 505 74 HOH HOH . 
L 5 HOH H 6 506 132 HOH HOH . 
L 5 HOH H 7 507 86 HOH HOH . 
L 5 HOH H 8 508 16 HOH HOH . 
L 5 HOH H 9 509 26 HOH HOH . 
L 5 HOH H 10 510 11 HOH HOH . 
L 5 HOH H 11 511 178 HOH HOH . 
L 5 HOH H 12 512 47 HOH HOH . 
L 5 HOH H 13 513 43 HOH HOH . 
L 5 HOH H 14 514 135 HOH HOH . 
L 5 HOH H 15 515 68 HOH HOH . 
L 5 HOH H 16 516 3 HOH HOH . 
L 5 HOH H 17 517 134 HOH HOH . 
L 5 HOH H 18 518 209 HOH HOH . 
L 5 HOH H 19 519 55 HOH HOH . 
L 5 HOH H 20 520 125 HOH HOH . 
L 5 HOH H 21 521 67 HOH HOH . 
L 5 HOH H 22 522 65 HOH HOH . 
L 5 HOH H 23 523 23 HOH HOH . 
L 5 HOH H 24 524 19 HOH HOH . 
L 5 HOH H 25 525 131 HOH HOH . 
L 5 HOH H 26 526 20 HOH HOH . 
L 5 HOH H 27 527 4 HOH HOH . 
L 5 HOH H 28 528 90 HOH HOH . 
L 5 HOH H 29 529 140 HOH HOH . 
L 5 HOH H 30 530 1 HOH HOH . 
L 5 HOH H 31 531 42 HOH HOH . 
L 5 HOH H 32 532 166 HOH HOH . 
L 5 HOH H 33 533 110 HOH HOH . 
L 5 HOH H 34 534 54 HOH HOH . 
L 5 HOH H 35 535 21 HOH HOH . 
L 5 HOH H 36 536 97 HOH HOH . 
L 5 HOH H 37 537 10 HOH HOH . 
L 5 HOH H 38 538 39 HOH HOH . 
L 5 HOH H 39 539 58 HOH HOH . 
L 5 HOH H 40 540 139 HOH HOH . 
L 5 HOH H 41 541 185 HOH HOH . 
L 5 HOH H 42 542 62 HOH HOH . 
L 5 HOH H 43 543 70 HOH HOH . 
L 5 HOH H 44 544 224 HOH HOH . 
L 5 HOH H 45 545 31 HOH HOH . 
L 5 HOH H 46 546 112 HOH HOH . 
L 5 HOH H 47 547 24 HOH HOH . 
L 5 HOH H 48 548 8 HOH HOH . 
L 5 HOH H 49 549 29 HOH HOH . 
L 5 HOH H 50 550 34 HOH HOH . 
L 5 HOH H 51 551 98 HOH HOH . 
L 5 HOH H 52 552 129 HOH HOH . 
L 5 HOH H 53 553 92 HOH HOH . 
L 5 HOH H 54 554 50 HOH HOH . 
L 5 HOH H 55 555 63 HOH HOH . 
L 5 HOH H 56 556 33 HOH HOH . 
L 5 HOH H 57 557 89 HOH HOH . 
L 5 HOH H 58 558 35 HOH HOH . 
L 5 HOH H 59 559 6 HOH HOH . 
L 5 HOH H 60 560 159 HOH HOH . 
L 5 HOH H 61 561 77 HOH HOH . 
L 5 HOH H 62 562 25 HOH HOH . 
L 5 HOH H 63 563 36 HOH HOH . 
L 5 HOH H 64 564 101 HOH HOH . 
L 5 HOH H 65 565 7 HOH HOH . 
L 5 HOH H 66 566 14 HOH HOH . 
L 5 HOH H 67 567 18 HOH HOH . 
L 5 HOH H 68 568 2 HOH HOH . 
L 5 HOH H 69 569 161 HOH HOH . 
L 5 HOH H 70 570 117 HOH HOH . 
L 5 HOH H 71 571 104 HOH HOH . 
L 5 HOH H 72 572 9 HOH HOH . 
L 5 HOH H 73 573 102 HOH HOH . 
L 5 HOH H 74 574 69 HOH HOH . 
L 5 HOH H 75 575 38 HOH HOH . 
L 5 HOH H 76 576 13 HOH HOH . 
L 5 HOH H 77 577 73 HOH HOH . 
L 5 HOH H 78 578 22 HOH HOH . 
L 5 HOH H 79 579 141 HOH HOH . 
L 5 HOH H 80 580 220 HOH HOH . 
L 5 HOH H 81 581 64 HOH HOH . 
L 5 HOH H 82 582 219 HOH HOH . 
L 5 HOH H 83 583 162 HOH HOH . 
L 5 HOH H 84 584 99 HOH HOH . 
L 5 HOH H 85 585 57 HOH HOH . 
L 5 HOH H 86 586 60 HOH HOH . 
L 5 HOH H 87 587 120 HOH HOH . 
L 5 HOH H 88 588 91 HOH HOH . 
L 5 HOH H 89 589 124 HOH HOH . 
L 5 HOH H 90 590 52 HOH HOH . 
L 5 HOH H 91 591 72 HOH HOH . 
L 5 HOH H 92 592 5 HOH HOH . 
L 5 HOH H 93 593 17 HOH HOH . 
L 5 HOH H 94 594 12 HOH HOH . 
L 5 HOH H 95 595 27 HOH HOH . 
L 5 HOH H 96 596 51 HOH HOH . 
L 5 HOH H 97 597 181 HOH HOH . 
L 5 HOH H 98 598 45 HOH HOH . 
L 5 HOH H 99 599 108 HOH HOH . 
L 5 HOH H 100 600 122 HOH HOH . 
L 5 HOH H 101 601 41 HOH HOH . 
L 5 HOH H 102 602 113 HOH HOH . 
L 5 HOH H 103 603 114 HOH HOH . 
L 5 HOH H 104 604 168 HOH HOH . 
L 5 HOH H 105 605 137 HOH HOH . 
L 5 HOH H 106 606 128 HOH HOH . 
L 5 HOH H 107 607 221 HOH HOH . 
L 5 HOH H 108 608 46 HOH HOH . 
L 5 HOH H 109 609 169 HOH HOH . 
L 5 HOH H 110 610 148 HOH HOH . 
L 5 HOH H 111 611 37 HOH HOH . 
L 5 HOH H 112 612 96 HOH HOH . 
L 5 HOH H 113 613 79 HOH HOH . 
L 5 HOH H 114 614 179 HOH HOH . 
L 5 HOH H 115 615 28 HOH HOH . 
L 5 HOH H 116 616 151 HOH HOH . 
L 5 HOH H 117 617 177 HOH HOH . 
L 5 HOH H 118 618 80 HOH HOH . 
L 5 HOH H 119 619 83 HOH HOH . 
L 5 HOH H 120 620 204 HOH HOH . 
L 5 HOH H 121 621 59 HOH HOH . 
L 5 HOH H 122 622 61 HOH HOH . 
L 5 HOH H 123 623 107 HOH HOH . 
L 5 HOH H 124 624 115 HOH HOH . 
L 5 HOH H 125 625 53 HOH HOH . 
L 5 HOH H 126 626 94 HOH HOH . 
L 5 HOH H 127 627 222 HOH HOH . 
L 5 HOH H 128 628 106 HOH HOH . 
L 5 HOH H 129 629 216 HOH HOH . 
L 5 HOH H 130 630 81 HOH HOH . 
L 5 HOH H 131 631 119 HOH HOH . 
L 5 HOH H 132 632 85 HOH HOH . 
L 5 HOH H 133 633 32 HOH HOH . 
L 5 HOH H 134 634 82 HOH HOH . 
L 5 HOH H 135 635 207 HOH HOH . 
L 5 HOH H 136 636 49 HOH HOH . 
L 5 HOH H 137 637 191 HOH HOH . 
L 5 HOH H 138 638 40 HOH HOH . 
L 5 HOH H 139 639 142 HOH HOH . 
L 5 HOH H 140 640 121 HOH HOH . 
L 5 HOH H 141 641 193 HOH HOH . 
L 5 HOH H 142 642 56 HOH HOH . 
L 5 HOH H 143 643 156 HOH HOH . 
L 5 HOH H 144 644 149 HOH HOH . 
L 5 HOH H 145 645 133 HOH HOH . 
L 5 HOH H 146 646 184 HOH HOH . 
L 5 HOH H 147 647 198 HOH HOH . 
L 5 HOH H 148 648 172 HOH HOH . 
L 5 HOH H 149 649 143 HOH HOH . 
L 5 HOH H 150 650 213 HOH HOH . 
L 5 HOH H 151 651 15 HOH HOH . 
L 5 HOH H 152 652 105 HOH HOH . 
L 5 HOH H 153 653 146 HOH HOH . 
L 5 HOH H 154 654 103 HOH HOH . 
L 5 HOH H 155 655 171 HOH HOH . 
L 5 HOH H 156 656 160 HOH HOH . 
L 5 HOH H 157 657 196 HOH HOH . 
L 5 HOH H 158 658 109 HOH HOH . 
L 5 HOH H 159 659 180 HOH HOH . 
L 5 HOH H 160 660 205 HOH HOH . 
L 5 HOH H 161 661 167 HOH HOH . 
L 5 HOH H 162 662 212 HOH HOH . 
L 5 HOH H 163 663 190 HOH HOH . 
L 5 HOH H 164 664 93 HOH HOH . 
L 5 HOH H 165 665 183 HOH HOH . 
L 5 HOH H 166 666 100 HOH HOH . 
L 5 HOH H 167 667 197 HOH HOH . 
L 5 HOH H 168 668 88 HOH HOH . 
L 5 HOH H 169 669 210 HOH HOH . 
L 5 HOH H 170 670 136 HOH HOH . 
L 5 HOH H 171 671 118 HOH HOH . 
L 5 HOH H 172 672 174 HOH HOH . 
L 5 HOH H 173 673 153 HOH HOH . 
L 5 HOH H 174 674 75 HOH HOH . 
L 5 HOH H 175 675 155 HOH HOH . 
L 5 HOH H 176 676 186 HOH HOH . 
L 5 HOH H 177 677 175 HOH HOH . 
L 5 HOH H 178 678 225 HOH HOH . 
L 5 HOH H 179 679 223 HOH HOH . 
L 5 HOH H 180 680 152 HOH HOH . 
L 5 HOH H 181 681 173 HOH HOH . 
L 5 HOH H 182 682 226 HOH HOH . 
L 5 HOH H 183 683 211 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           BR 
_atom_site.label_atom_id         BR 
_atom_site.label_comp_id         LB6 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               59.099 
_atom_site.Cartn_y               36.178 
_atom_site.Cartn_z               -20.267 
_atom_site.occupancy             0.21 
_atom_site.B_iso_or_equiv        49.29 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          BR 
_atom_site.auth_comp_id          LB6 
_atom_site.auth_seq_id           405 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#