data_7MDA # _model_server_result.job_id LsEIfZ3AxEw9JqiinUiZhQ _model_server_result.datetime_utc '2024-12-01 06:01:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7MDA # _exptl.entry_id 7MDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MDA _cell.length_a 105.227 _cell.length_b 105.227 _cell.length_c 287.668 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 105.227 105.227 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 105.227 105.227 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 195 H THR 195 1_555 A N LLP 196 H LLP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C LLP 196 H LLP 196 1_555 A N TYR 197 H TYR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A O GLN 290 H GLN 290 1_555 E NA NA . H NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc2 D NA NA . H NA 403 1_555 G O HOH . H HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc3 D NA NA . H NA 403 1_555 G O HOH . H HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MDA _atom_sites.fract_transf_matrix[1][1] 0.009503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LB6 H 1 401 902 LB6 LB6 . C 2 LB6 H 1 402 903 LB6 LB6 . D 3 NA H 1 403 1 NA NA . E 3 NA H 1 404 4 NA NA . F 4 EPE H 1 405 501 EPE EPE . G 5 HOH H 1 501 86 HOH HOH . G 5 HOH H 2 502 3 HOH HOH . G 5 HOH H 3 503 47 HOH HOH . G 5 HOH H 4 504 16 HOH HOH . G 5 HOH H 5 505 4 HOH HOH . G 5 HOH H 6 506 21 HOH HOH . G 5 HOH H 7 507 1 HOH HOH . G 5 HOH H 8 508 43 HOH HOH . G 5 HOH H 9 509 65 HOH HOH . G 5 HOH H 10 510 209 HOH HOH . G 5 HOH H 11 511 110 HOH HOH . G 5 HOH H 12 512 135 HOH HOH . G 5 HOH H 13 513 26 HOH HOH . G 5 HOH H 14 514 11 HOH HOH . G 5 HOH H 15 515 55 HOH HOH . G 5 HOH H 16 516 10 HOH HOH . G 5 HOH H 17 517 131 HOH HOH . G 5 HOH H 18 518 36 HOH HOH . G 5 HOH H 19 519 50 HOH HOH . G 5 HOH H 20 520 35 HOH HOH . G 5 HOH H 21 521 185 HOH HOH . G 5 HOH H 22 522 25 HOH HOH . G 5 HOH H 23 523 20 HOH HOH . G 5 HOH H 24 524 54 HOH HOH . G 5 HOH H 25 525 68 HOH HOH . G 5 HOH H 26 526 30 HOH HOH . G 5 HOH H 27 527 62 HOH HOH . G 5 HOH H 28 528 60 HOH HOH . G 5 HOH H 29 529 9 HOH HOH . G 5 HOH H 30 530 6 HOH HOH . G 5 HOH H 31 531 63 HOH HOH . G 5 HOH H 32 532 29 HOH HOH . G 5 HOH H 33 533 8 HOH HOH . G 5 HOH H 34 534 129 HOH HOH . G 5 HOH H 35 535 31 HOH HOH . G 5 HOH H 36 536 14 HOH HOH . G 5 HOH H 37 537 24 HOH HOH . G 5 HOH H 38 538 79 HOH HOH . G 5 HOH H 39 539 39 HOH HOH . G 5 HOH H 40 540 58 HOH HOH . G 5 HOH H 41 541 34 HOH HOH . G 5 HOH H 42 542 64 HOH HOH . G 5 HOH H 43 543 45 HOH HOH . G 5 HOH H 44 544 101 HOH HOH . G 5 HOH H 45 545 33 HOH HOH . G 5 HOH H 46 546 7 HOH HOH . G 5 HOH H 47 547 117 HOH HOH . G 5 HOH H 48 548 18 HOH HOH . G 5 HOH H 49 549 162 HOH HOH . G 5 HOH H 50 550 27 HOH HOH . G 5 HOH H 51 551 51 HOH HOH . G 5 HOH H 52 552 89 HOH HOH . G 5 HOH H 53 553 41 HOH HOH . G 5 HOH H 54 554 59 HOH HOH . G 5 HOH H 55 555 52 HOH HOH . G 5 HOH H 56 556 227 HOH HOH . G 5 HOH H 57 557 5 HOH HOH . G 5 HOH H 58 558 98 HOH HOH . G 5 HOH H 59 559 204 HOH HOH . G 5 HOH H 60 560 61 HOH HOH . G 5 HOH H 61 561 229 HOH HOH . G 5 HOH H 62 562 2 HOH HOH . G 5 HOH H 63 563 197 HOH HOH . G 5 HOH H 64 564 91 HOH HOH . G 5 HOH H 65 565 57 HOH HOH . G 5 HOH H 66 566 17 HOH HOH . G 5 HOH H 67 567 13 HOH HOH . G 5 HOH H 68 568 90 HOH HOH . G 5 HOH H 69 569 166 HOH HOH . G 5 HOH H 70 570 73 HOH HOH . G 5 HOH H 71 571 53 HOH HOH . G 5 HOH H 72 572 125 HOH HOH . G 5 HOH H 73 573 12 HOH HOH . G 5 HOH H 74 574 220 HOH HOH . G 5 HOH H 75 575 106 HOH HOH . G 5 HOH H 76 576 67 HOH HOH . G 5 HOH H 77 577 46 HOH HOH . G 5 HOH H 78 578 115 HOH HOH . G 5 HOH H 79 579 28 HOH HOH . G 5 HOH H 80 580 85 HOH HOH . G 5 HOH H 81 581 38 HOH HOH . G 5 HOH H 82 582 40 HOH HOH . G 5 HOH H 83 583 83 HOH HOH . G 5 HOH H 84 584 222 HOH HOH . G 5 HOH H 85 585 142 HOH HOH . G 5 HOH H 86 586 32 HOH HOH . G 5 HOH H 87 587 177 HOH HOH . G 5 HOH H 88 588 168 HOH HOH . G 5 HOH H 89 589 232 HOH HOH . G 5 HOH H 90 590 22 HOH HOH . G 5 HOH H 91 591 184 HOH HOH . G 5 HOH H 92 592 112 HOH HOH . G 5 HOH H 93 593 97 HOH HOH . G 5 HOH H 94 594 82 HOH HOH . G 5 HOH H 95 595 49 HOH HOH . G 5 HOH H 96 596 56 HOH HOH . G 5 HOH H 97 597 109 HOH HOH . G 5 HOH H 98 598 156 HOH HOH . G 5 HOH H 99 599 241 HOH HOH . G 5 HOH H 100 600 191 HOH HOH . G 5 HOH H 101 601 146 HOH HOH . G 5 HOH H 102 602 235 HOH HOH . G 5 HOH H 103 603 246 HOH HOH . G 5 HOH H 104 604 100 HOH HOH . G 5 HOH H 105 605 244 HOH HOH . G 5 HOH H 106 606 154 HOH HOH . G 5 HOH H 107 607 239 HOH HOH . G 5 HOH H 108 608 167 HOH HOH . G 5 HOH H 109 609 75 HOH HOH . G 5 HOH H 110 610 240 HOH HOH . G 5 HOH H 111 611 247 HOH HOH . G 5 HOH H 112 612 205 HOH HOH . G 5 HOH H 113 613 216 HOH HOH . G 5 HOH H 114 614 242 HOH HOH . G 5 HOH H 115 615 238 HOH HOH . G 5 HOH H 116 616 237 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 38.45 _atom_site.Cartn_y 27.368 _atom_site.Cartn_z -19.593 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #