data_7MDC # _model_server_result.job_id HvG5ahJKIGXrCUMvfvnqtg _model_server_result.datetime_utc '2024-11-04 23:47:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 7MDC # _exptl.entry_id 7MDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MDC _cell.length_a 96.718 _cell.length_b 96.718 _cell.length_c 183.382 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 307 A CYS 337 1_555 A SG CYS 333 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? covale ? covale1 A OG SER 65 A SER 95 1_555 J B13 YX7 . A YX7 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 7MDC _atom_sites.fract_transf_matrix[1][1] 0.010339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PE A 1 601 711 2PE 2PE . C 3 DMS A 1 602 811 DMS DMS . D 2 2PE A 1 603 911 2PE 2PE . E 2 2PE A 1 604 1011 2PE 2PE . F 2 2PE A 1 605 1111 2PE 2PE . G 2 2PE A 1 606 1211 2PE 2PE . H 2 2PE A 1 607 1311 2PE 2PE . I 4 97N A 1 608 1411 97N 97N . J 5 YX7 A 1 609 1412 YX7 BR3 . K 6 SO4 A 1 610 6 SO4 SO4 . L 2 2PE A 1 611 1 2PE 2PE . M 7 CL A 1 612 1 CL CL . N 7 CL A 1 613 2 CL CL . O 7 CL A 1 614 3 CL CL . P 8 HOH A 1 701 136 HOH HOH . P 8 HOH A 2 702 30 HOH HOH . P 8 HOH A 3 703 252 HOH HOH . P 8 HOH A 4 704 85 HOH HOH . P 8 HOH A 5 705 106 HOH HOH . P 8 HOH A 6 706 215 HOH HOH . P 8 HOH A 7 707 145 HOH HOH . P 8 HOH A 8 708 95 HOH HOH . P 8 HOH A 9 709 42 HOH HOH . P 8 HOH A 10 710 103 HOH HOH . P 8 HOH A 11 711 190 HOH HOH . P 8 HOH A 12 712 28 HOH HOH . P 8 HOH A 13 713 114 HOH HOH . P 8 HOH A 14 714 266 HOH HOH . P 8 HOH A 15 715 144 HOH HOH . P 8 HOH A 16 716 210 HOH HOH . P 8 HOH A 17 717 204 HOH HOH . P 8 HOH A 18 718 174 HOH HOH . P 8 HOH A 19 719 65 HOH HOH . P 8 HOH A 20 720 43 HOH HOH . P 8 HOH A 21 721 104 HOH HOH . P 8 HOH A 22 722 89 HOH HOH . P 8 HOH A 23 723 138 HOH HOH . P 8 HOH A 24 724 141 HOH HOH . P 8 HOH A 25 725 9 HOH HOH . P 8 HOH A 26 726 31 HOH HOH . P 8 HOH A 27 727 98 HOH HOH . P 8 HOH A 28 728 75 HOH HOH . P 8 HOH A 29 729 140 HOH HOH . P 8 HOH A 30 730 3 HOH HOH . P 8 HOH A 31 731 57 HOH HOH . P 8 HOH A 32 732 267 HOH HOH . P 8 HOH A 33 733 122 HOH HOH . P 8 HOH A 34 734 26 HOH HOH . P 8 HOH A 35 735 233 HOH HOH . P 8 HOH A 36 736 96 HOH HOH . P 8 HOH A 37 737 268 HOH HOH . P 8 HOH A 38 738 32 HOH HOH . P 8 HOH A 39 739 20 HOH HOH . P 8 HOH A 40 740 189 HOH HOH . P 8 HOH A 41 741 97 HOH HOH . P 8 HOH A 42 742 132 HOH HOH . P 8 HOH A 43 743 143 HOH HOH . P 8 HOH A 44 744 123 HOH HOH . P 8 HOH A 45 745 196 HOH HOH . P 8 HOH A 46 746 275 HOH HOH . P 8 HOH A 47 747 147 HOH HOH . P 8 HOH A 48 748 105 HOH HOH . P 8 HOH A 49 749 4 HOH HOH . P 8 HOH A 50 750 87 HOH HOH . P 8 HOH A 51 751 213 HOH HOH . P 8 HOH A 52 752 273 HOH HOH . P 8 HOH A 53 753 235 HOH HOH . P 8 HOH A 54 754 227 HOH HOH . P 8 HOH A 55 755 102 HOH HOH . P 8 HOH A 56 756 125 HOH HOH . P 8 HOH A 57 757 186 HOH HOH . P 8 HOH A 58 758 100 HOH HOH . P 8 HOH A 59 759 19 HOH HOH . P 8 HOH A 60 760 33 HOH HOH . P 8 HOH A 61 761 239 HOH HOH . P 8 HOH A 62 762 164 HOH HOH . P 8 HOH A 63 763 35 HOH HOH . P 8 HOH A 64 764 110 HOH HOH . P 8 HOH A 65 765 194 HOH HOH . P 8 HOH A 66 766 1 HOH HOH . P 8 HOH A 67 767 7 HOH HOH . P 8 HOH A 68 768 39 HOH HOH . P 8 HOH A 69 769 10 HOH HOH . P 8 HOH A 70 770 261 HOH HOH . P 8 HOH A 71 771 61 HOH HOH . P 8 HOH A 72 772 81 HOH HOH . P 8 HOH A 73 773 274 HOH HOH . P 8 HOH A 74 774 269 HOH HOH . P 8 HOH A 75 775 8 HOH HOH . P 8 HOH A 76 776 276 HOH HOH . P 8 HOH A 77 777 134 HOH HOH . P 8 HOH A 78 778 112 HOH HOH . P 8 HOH A 79 779 38 HOH HOH . P 8 HOH A 80 780 248 HOH HOH . P 8 HOH A 81 781 197 HOH HOH . P 8 HOH A 82 782 277 HOH HOH . P 8 HOH A 83 783 71 HOH HOH . P 8 HOH A 84 784 128 HOH HOH . P 8 HOH A 85 785 212 HOH HOH . P 8 HOH A 86 786 27 HOH HOH . P 8 HOH A 87 787 229 HOH HOH . P 8 HOH A 88 788 179 HOH HOH . P 8 HOH A 89 789 131 HOH HOH . P 8 HOH A 90 790 56 HOH HOH . P 8 HOH A 91 791 142 HOH HOH . P 8 HOH A 92 792 36 HOH HOH . P 8 HOH A 93 793 54 HOH HOH . P 8 HOH A 94 794 91 HOH HOH . P 8 HOH A 95 795 15 HOH HOH . P 8 HOH A 96 796 272 HOH HOH . P 8 HOH A 97 797 124 HOH HOH . P 8 HOH A 98 798 278 HOH HOH . P 8 HOH A 99 799 130 HOH HOH . P 8 HOH A 100 800 135 HOH HOH . P 8 HOH A 101 801 50 HOH HOH . P 8 HOH A 102 802 263 HOH HOH . P 8 HOH A 103 803 129 HOH HOH . P 8 HOH A 104 804 11 HOH HOH . P 8 HOH A 105 805 180 HOH HOH . P 8 HOH A 106 806 53 HOH HOH . P 8 HOH A 107 807 199 HOH HOH . P 8 HOH A 108 808 80 HOH HOH . P 8 HOH A 109 809 279 HOH HOH . P 8 HOH A 110 810 2 HOH HOH . P 8 HOH A 111 811 12 HOH HOH . P 8 HOH A 112 812 59 HOH HOH . P 8 HOH A 113 813 155 HOH HOH . P 8 HOH A 114 814 86 HOH HOH . P 8 HOH A 115 815 77 HOH HOH . P 8 HOH A 116 816 120 HOH HOH . P 8 HOH A 117 817 83 HOH HOH . P 8 HOH A 118 818 82 HOH HOH . P 8 HOH A 119 819 79 HOH HOH . P 8 HOH A 120 820 257 HOH HOH . P 8 HOH A 121 821 84 HOH HOH . P 8 HOH A 122 822 170 HOH HOH . P 8 HOH A 123 823 108 HOH HOH . P 8 HOH A 124 824 231 HOH HOH . P 8 HOH A 125 825 228 HOH HOH . P 8 HOH A 126 826 69 HOH HOH . P 8 HOH A 127 827 60 HOH HOH . P 8 HOH A 128 828 271 HOH HOH . P 8 HOH A 129 829 72 HOH HOH . P 8 HOH A 130 830 68 HOH HOH . P 8 HOH A 131 831 67 HOH HOH . P 8 HOH A 132 832 78 HOH HOH . P 8 HOH A 133 833 107 HOH HOH . P 8 HOH A 134 834 187 HOH HOH . P 8 HOH A 135 835 211 HOH HOH . P 8 HOH A 136 836 264 HOH HOH . P 8 HOH A 137 837 127 HOH HOH . P 8 HOH A 138 838 99 HOH HOH . P 8 HOH A 139 839 234 HOH HOH . P 8 HOH A 140 840 203 HOH HOH . P 8 HOH A 141 841 200 HOH HOH . P 8 HOH A 142 842 280 HOH HOH . P 8 HOH A 143 843 137 HOH HOH . P 8 HOH A 144 844 237 HOH HOH . P 8 HOH A 145 845 34 HOH HOH . P 8 HOH A 146 846 133 HOH HOH . P 8 HOH A 147 847 260 HOH HOH . P 8 HOH A 148 848 254 HOH HOH . P 8 HOH A 149 849 258 HOH HOH . P 8 HOH A 150 850 270 HOH HOH . P 8 HOH A 151 851 214 HOH HOH . P 8 HOH A 152 852 52 HOH HOH . P 8 HOH A 153 853 262 HOH HOH . P 8 HOH A 154 854 165 HOH HOH . P 8 HOH A 155 855 23 HOH HOH . P 8 HOH A 156 856 188 HOH HOH . P 8 HOH A 157 857 94 HOH HOH . P 8 HOH A 158 858 13 HOH HOH . P 8 HOH A 159 859 24 HOH HOH . P 8 HOH A 160 860 58 HOH HOH . P 8 HOH A 161 861 230 HOH HOH . P 8 HOH A 162 862 76 HOH HOH . P 8 HOH A 163 863 253 HOH HOH . P 8 HOH A 164 864 88 HOH HOH . P 8 HOH A 165 865 201 HOH HOH . P 8 HOH A 166 866 243 HOH HOH . P 8 HOH A 167 867 48 HOH HOH . P 8 HOH A 168 868 198 HOH HOH . P 8 HOH A 169 869 18 HOH HOH . P 8 HOH A 170 870 41 HOH HOH . P 8 HOH A 171 871 47 HOH HOH . P 8 HOH A 172 872 55 HOH HOH . P 8 HOH A 173 873 217 HOH HOH . P 8 HOH A 174 874 64 HOH HOH . P 8 HOH A 175 875 22 HOH HOH . P 8 HOH A 176 876 192 HOH HOH . P 8 HOH A 177 877 244 HOH HOH . P 8 HOH A 178 878 209 HOH HOH . P 8 HOH A 179 879 242 HOH HOH . P 8 HOH A 180 880 216 HOH HOH . P 8 HOH A 181 881 90 HOH HOH . P 8 HOH A 182 882 259 HOH HOH . P 8 HOH A 183 883 236 HOH HOH . P 8 HOH A 184 884 46 HOH HOH . P 8 HOH A 185 885 177 HOH HOH . P 8 HOH A 186 886 225 HOH HOH . P 8 HOH A 187 887 44 HOH HOH . P 8 HOH A 188 888 240 HOH HOH . P 8 HOH A 189 889 185 HOH HOH . P 8 HOH A 190 890 202 HOH HOH . P 8 HOH A 191 891 250 HOH HOH . P 8 HOH A 192 892 121 HOH HOH . P 8 HOH A 193 893 70 HOH HOH . P 8 HOH A 194 894 167 HOH HOH . P 8 HOH A 195 895 37 HOH HOH . P 8 HOH A 196 896 256 HOH HOH . P 8 HOH A 197 897 14 HOH HOH . P 8 HOH A 198 898 109 HOH HOH . P 8 HOH A 199 899 168 HOH HOH . P 8 HOH A 200 900 205 HOH HOH . P 8 HOH A 201 901 115 HOH HOH . P 8 HOH A 202 902 146 HOH HOH . P 8 HOH A 203 903 17 HOH HOH . P 8 HOH A 204 904 241 HOH HOH . P 8 HOH A 205 905 113 HOH HOH . P 8 HOH A 206 906 265 HOH HOH . P 8 HOH A 207 907 184 HOH HOH . P 8 HOH A 208 908 21 HOH HOH . P 8 HOH A 209 909 74 HOH HOH . P 8 HOH A 210 910 193 HOH HOH . P 8 HOH A 211 911 224 HOH HOH . P 8 HOH A 212 912 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . G 2 -5.975 38.297 55.333 1 86.47 ? O1 2PE 606 A 1 HETATM 2 C C2 2PE . . . G 2 -6.455 38.463 56.648 1 93.71 ? C2 2PE 606 A 1 HETATM 3 C C3 2PE . . . G 2 -5.807 37.453 57.599 1 95.03 ? C3 2PE 606 A 1 HETATM 4 O O4 2PE . . . G 2 -4.491 37.182 57.181 1 108.07 ? O4 2PE 606 A 1 HETATM 5 C C5 2PE . . . G 2 -3.611 36.714 58.171 1 91.02 ? C5 2PE 606 A 1 HETATM 6 C C6 2PE . . . G 2 -3.389 37.761 59.27 1 93.8 ? C6 2PE 606 A 1 HETATM 7 O O7 2PE . . . G 2 -2.481 38.743 58.848 1 88.2 ? O7 2PE 606 A 1 HETATM 8 C C8 2PE . . . G 2 -2.976 40.053 58.876 1 81.52 ? C8 2PE 606 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #