data_7MDE # _model_server_result.job_id L4ejPSNUZ6e1G4PIZ37gkw _model_server_result.datetime_utc '2024-11-22 15:50:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 7MDE # _exptl.entry_id 7MDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MDE _cell.length_a 97.475 _cell.length_b 97.475 _cell.length_c 183.973 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 97.475 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 307 A CYS 337 1_555 A SG CYS 333 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A C ARG 20 A ARG 50 1_555 A N MSE 21 A MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 21 A MSE 51 1_555 A N GLN 22 A GLN 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C ALA 65 A ALA 95 1_555 A N MSE 66 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 66 A MSE 96 1_555 A N SER 67 A SER 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 A C GLU 96 A GLU 126 1_555 A N MSE 97 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 97 A MSE 127 1_555 A N ARG 98 A ARG 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C PRO 131 A PRO 161 1_555 A N MSE 132 A MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 132 A MSE 162 1_555 A N PRO 133 A PRO 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale9 A C GLY 189 A GLY 219 1_555 A N MSE 190 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 190 A MSE 220 1_555 A N SER 191 A SER 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 A C ASP 239 A ASP 269 1_555 A N MSE 240 A MSE 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 240 A MSE 270 1_555 A N GLU 241 A GLU 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale13 A C ALA 260 A ALA 290 1_555 A N MSE 261 A MSE 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 261 A MSE 291 1_555 A N SER 262 A SER 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 A C ASN 323 A ASN 353 1_555 A N MSE 324 A MSE 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 A C MSE 324 A MSE 354 1_555 A N ASN 325 A ASN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale17 A C ALA 415 A ALA 445 1_555 A N MSE 416 A MSE 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 A C MSE 416 A MSE 446 1_555 A N LEU 417 A LEU 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale19 A C ILE 423 A ILE 453 1_555 A N MSE 424 A MSE 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 A C MSE 424 A MSE 454 1_555 A N SER 425 A SER 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 A C GLY 447 A GLY 477 1_555 A N MSE 448 A MSE 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 A C MSE 448 A MSE 478 1_555 A N ILE 449 A ILE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 148 n n S C1 DMS sing 149 n n S C2 DMS sing 150 n n C1 H11 DMS sing 151 n n C1 H12 DMS sing 152 n n C1 H13 DMS sing 153 n n C2 H21 DMS sing 154 n n C2 H22 DMS sing 155 n n C2 H23 DMS sing 156 n n # _atom_sites.entry_id 7MDE _atom_sites.fract_transf_matrix[1][1] 0.010259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 601 501 OLC OLC . C 2 OLC A 1 602 502 OLC OLC . D 3 2PE A 1 603 801 2PE 2PE . E 3 2PE A 1 604 901 2PE 2PE . F 4 IMD A 1 605 1301 IMD IMD . G 3 2PE A 1 606 1401 2PE 2PE . H 3 2PE A 1 607 1501 2PE 2PE . I 5 DMS A 1 608 1601 DMS DMS . J 6 SO4 A 1 609 2 SO4 SO4 . K 7 CL A 1 610 1 CL CL . L 7 CL A 1 611 2 CL CL . M 7 CL A 1 612 3 CL CL . N 8 HOH A 1 701 146 HOH HOH . N 8 HOH A 2 702 139 HOH HOH . N 8 HOH A 3 703 187 HOH HOH . N 8 HOH A 4 704 82 HOH HOH . N 8 HOH A 5 705 124 HOH HOH . N 8 HOH A 6 706 169 HOH HOH . N 8 HOH A 7 707 55 HOH HOH . N 8 HOH A 8 708 147 HOH HOH . N 8 HOH A 9 709 70 HOH HOH . N 8 HOH A 10 710 125 HOH HOH . N 8 HOH A 11 711 41 HOH HOH . N 8 HOH A 12 712 46 HOH HOH . N 8 HOH A 13 713 190 HOH HOH . N 8 HOH A 14 714 43 HOH HOH . N 8 HOH A 15 715 56 HOH HOH . N 8 HOH A 16 716 132 HOH HOH . N 8 HOH A 17 717 189 HOH HOH . N 8 HOH A 18 718 3 HOH HOH . N 8 HOH A 19 719 179 HOH HOH . N 8 HOH A 20 720 63 HOH HOH . N 8 HOH A 21 721 126 HOH HOH . N 8 HOH A 22 722 5 HOH HOH . N 8 HOH A 23 723 37 HOH HOH . N 8 HOH A 24 724 61 HOH HOH . N 8 HOH A 25 725 15 HOH HOH . N 8 HOH A 26 726 172 HOH HOH . N 8 HOH A 27 727 122 HOH HOH . N 8 HOH A 28 728 115 HOH HOH . N 8 HOH A 29 729 175 HOH HOH . N 8 HOH A 30 730 59 HOH HOH . N 8 HOH A 31 731 47 HOH HOH . N 8 HOH A 32 732 116 HOH HOH . N 8 HOH A 33 733 50 HOH HOH . N 8 HOH A 34 734 160 HOH HOH . N 8 HOH A 35 735 123 HOH HOH . N 8 HOH A 36 736 120 HOH HOH . N 8 HOH A 37 737 166 HOH HOH . N 8 HOH A 38 738 62 HOH HOH . N 8 HOH A 39 739 191 HOH HOH . N 8 HOH A 40 740 164 HOH HOH . N 8 HOH A 41 741 36 HOH HOH . N 8 HOH A 42 742 64 HOH HOH . N 8 HOH A 43 743 40 HOH HOH . N 8 HOH A 44 744 57 HOH HOH . N 8 HOH A 45 745 145 HOH HOH . N 8 HOH A 46 746 142 HOH HOH . N 8 HOH A 47 747 100 HOH HOH . N 8 HOH A 48 748 78 HOH HOH . N 8 HOH A 49 749 58 HOH HOH . N 8 HOH A 50 750 181 HOH HOH . N 8 HOH A 51 751 156 HOH HOH . N 8 HOH A 52 752 17 HOH HOH . N 8 HOH A 53 753 44 HOH HOH . N 8 HOH A 54 754 1 HOH HOH . N 8 HOH A 55 755 184 HOH HOH . N 8 HOH A 56 756 131 HOH HOH . N 8 HOH A 57 757 76 HOH HOH . N 8 HOH A 58 758 136 HOH HOH . N 8 HOH A 59 759 130 HOH HOH . N 8 HOH A 60 760 134 HOH HOH . N 8 HOH A 61 761 92 HOH HOH . N 8 HOH A 62 762 102 HOH HOH . N 8 HOH A 63 763 2 HOH HOH . N 8 HOH A 64 764 11 HOH HOH . N 8 HOH A 65 765 86 HOH HOH . N 8 HOH A 66 766 99 HOH HOH . N 8 HOH A 67 767 16 HOH HOH . N 8 HOH A 68 768 80 HOH HOH . N 8 HOH A 69 769 112 HOH HOH . N 8 HOH A 70 770 117 HOH HOH . N 8 HOH A 71 771 52 HOH HOH . N 8 HOH A 72 772 90 HOH HOH . N 8 HOH A 73 773 75 HOH HOH . N 8 HOH A 74 774 54 HOH HOH . N 8 HOH A 75 775 177 HOH HOH . N 8 HOH A 76 776 32 HOH HOH . N 8 HOH A 77 777 171 HOH HOH . N 8 HOH A 78 778 73 HOH HOH . N 8 HOH A 79 779 60 HOH HOH . N 8 HOH A 80 780 6 HOH HOH . N 8 HOH A 81 781 19 HOH HOH . N 8 HOH A 82 782 162 HOH HOH . N 8 HOH A 83 783 81 HOH HOH . N 8 HOH A 84 784 168 HOH HOH . N 8 HOH A 85 785 174 HOH HOH . N 8 HOH A 86 786 97 HOH HOH . N 8 HOH A 87 787 133 HOH HOH . N 8 HOH A 88 788 4 HOH HOH . N 8 HOH A 89 789 98 HOH HOH . N 8 HOH A 90 790 167 HOH HOH . N 8 HOH A 91 791 151 HOH HOH . N 8 HOH A 92 792 39 HOH HOH . N 8 HOH A 93 793 192 HOH HOH . N 8 HOH A 94 794 178 HOH HOH . N 8 HOH A 95 795 127 HOH HOH . N 8 HOH A 96 796 138 HOH HOH . N 8 HOH A 97 797 42 HOH HOH . N 8 HOH A 98 798 91 HOH HOH . N 8 HOH A 99 799 84 HOH HOH . N 8 HOH A 100 800 143 HOH HOH . N 8 HOH A 101 801 186 HOH HOH . N 8 HOH A 102 802 96 HOH HOH . N 8 HOH A 103 803 141 HOH HOH . N 8 HOH A 104 804 173 HOH HOH . N 8 HOH A 105 805 107 HOH HOH . N 8 HOH A 106 806 45 HOH HOH . N 8 HOH A 107 807 129 HOH HOH . N 8 HOH A 108 808 128 HOH HOH . N 8 HOH A 109 809 22 HOH HOH . N 8 HOH A 110 810 137 HOH HOH . N 8 HOH A 111 811 48 HOH HOH . N 8 HOH A 112 812 65 HOH HOH . N 8 HOH A 113 813 108 HOH HOH . N 8 HOH A 114 814 38 HOH HOH . N 8 HOH A 115 815 83 HOH HOH . N 8 HOH A 116 816 49 HOH HOH . N 8 HOH A 117 817 148 HOH HOH . N 8 HOH A 118 818 25 HOH HOH . N 8 HOH A 119 819 140 HOH HOH . N 8 HOH A 120 820 101 HOH HOH . N 8 HOH A 121 821 20 HOH HOH . N 8 HOH A 122 822 67 HOH HOH . N 8 HOH A 123 823 69 HOH HOH . N 8 HOH A 124 824 176 HOH HOH . N 8 HOH A 125 825 23 HOH HOH . N 8 HOH A 126 826 157 HOH HOH . N 8 HOH A 127 827 18 HOH HOH . N 8 HOH A 128 828 165 HOH HOH . N 8 HOH A 129 829 9 HOH HOH . N 8 HOH A 130 830 66 HOH HOH . N 8 HOH A 131 831 104 HOH HOH . N 8 HOH A 132 832 180 HOH HOH . N 8 HOH A 133 833 109 HOH HOH . N 8 HOH A 134 834 113 HOH HOH . N 8 HOH A 135 835 183 HOH HOH . N 8 HOH A 136 836 95 HOH HOH . N 8 HOH A 137 837 163 HOH HOH . N 8 HOH A 138 838 114 HOH HOH . N 8 HOH A 139 839 77 HOH HOH . N 8 HOH A 140 840 149 HOH HOH . N 8 HOH A 141 841 13 HOH HOH . N 8 HOH A 142 842 94 HOH HOH . N 8 HOH A 143 843 154 HOH HOH . N 8 HOH A 144 844 53 HOH HOH . N 8 HOH A 145 845 74 HOH HOH . N 8 HOH A 146 846 135 HOH HOH . N 8 HOH A 147 847 152 HOH HOH . N 8 HOH A 148 848 105 HOH HOH . N 8 HOH A 149 849 118 HOH HOH . N 8 HOH A 150 850 153 HOH HOH . N 8 HOH A 151 851 111 HOH HOH . N 8 HOH A 152 852 87 HOH HOH . N 8 HOH A 153 853 79 HOH HOH . N 8 HOH A 154 854 71 HOH HOH . N 8 HOH A 155 855 119 HOH HOH . N 8 HOH A 156 856 103 HOH HOH . N 8 HOH A 157 857 68 HOH HOH . N 8 HOH A 158 858 182 HOH HOH . N 8 HOH A 159 859 121 HOH HOH . N 8 HOH A 160 860 21 HOH HOH . N 8 HOH A 161 861 29 HOH HOH . N 8 HOH A 162 862 89 HOH HOH . N 8 HOH A 163 863 93 HOH HOH . N 8 HOH A 164 864 150 HOH HOH . N 8 HOH A 165 865 85 HOH HOH . N 8 HOH A 166 866 31 HOH HOH . N 8 HOH A 167 867 12 HOH HOH . N 8 HOH A 168 868 158 HOH HOH . N 8 HOH A 169 869 106 HOH HOH . N 8 HOH A 170 870 27 HOH HOH . N 8 HOH A 171 871 33 HOH HOH . N 8 HOH A 172 872 51 HOH HOH . N 8 HOH A 173 873 144 HOH HOH . N 8 HOH A 174 874 155 HOH HOH . N 8 HOH A 175 875 170 HOH HOH . N 8 HOH A 176 876 110 HOH HOH . N 8 HOH A 177 877 34 HOH HOH . N 8 HOH A 178 878 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 5 -2.915 55.909 48.601 1 64.5 ? S DMS 608 A 1 HETATM 2 O O DMS . . . I 5 -3.12 57.089 47.7 1 70.45 ? O DMS 608 A 1 HETATM 3 C C1 DMS . . . I 5 -3.598 56.262 50.243 1 59.89 ? C1 DMS 608 A 1 HETATM 4 C C2 DMS . . . I 5 -1.159 55.688 49.035 1 74.18 ? C2 DMS 608 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #