data_7MDN # _model_server_result.job_id UxsguSHOzQzAD2ldkBIgoA _model_server_result.datetime_utc '2025-04-10 07:08:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 7MDN # _exptl.entry_id 7MDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-cyclopropyl-3-oxidanylidene-~{N}-(thiophen-2-ylmethyl)-4~{H}-1,4-benzoxazine-7-carboxamide _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 75.52 _cell.angle_beta 79.36 _cell.angle_gamma 60.47 _cell.entry_id 7MDN _cell.length_a 68.3 _cell.length_b 69.1 _cell.length_c 80.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C17 H16 N2 O3 S' _chem_comp.formula_weight 328.386 _chem_comp.id Y6V _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-cyclopropyl-3-oxidanylidene-~{N}-(thiophen-2-ylmethyl)-4~{H}-1,4-benzoxazine-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 Y6V sing 376 n n C9 C7 Y6V sing 377 n n O1 C1 Y6V doub 378 n n C2 N1 Y6V sing 379 n n C2 C3 Y6V sing 380 n n C8 C7 Y6V sing 381 n n N1 C1 Y6V sing 382 n n N1 C7 Y6V sing 383 n n C1 C10 Y6V sing 384 n n C11 C10 Y6V doub 385 n y C11 C12 Y6V sing 386 n y C3 C4 Y6V doub 387 n y C3 S1 Y6V sing 388 n y C4 C5 Y6V sing 389 n y C10 C17 Y6V sing 390 n y C12 C13 Y6V doub 391 n y S1 C6 Y6V sing 392 n y C5 C6 Y6V doub 393 n y C17 C16 Y6V doub 394 n y C13 C16 Y6V sing 395 n y C13 N2 Y6V sing 396 n n C16 O3 Y6V sing 397 n n N2 C14 Y6V sing 398 n n O3 C15 Y6V sing 399 n n C14 C15 Y6V sing 400 n n C14 O2 Y6V doub 401 n n C2 H1 Y6V sing 402 n n C2 H2 Y6V sing 403 n n C4 H3 Y6V sing 404 n n C5 H4 Y6V sing 405 n n C6 H5 Y6V sing 406 n n C7 H6 Y6V sing 407 n n C8 H7 Y6V sing 408 n n C8 H8 Y6V sing 409 n n C9 H9 Y6V sing 410 n n C9 H10 Y6V sing 411 n n C11 H11 Y6V sing 412 n n C12 H12 Y6V sing 413 n n N2 H13 Y6V sing 414 n n C15 H14 Y6V sing 415 n n C15 H15 Y6V sing 416 n n C17 H16 Y6V sing 417 n n # _atom_sites.entry_id 7MDN _atom_sites.fract_transf_matrix[1][1] 0.014641 _atom_sites.fract_transf_matrix[1][2] -0.008294 _atom_sites.fract_transf_matrix[1][3] -0.00123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016632 _atom_sites.fract_transf_matrix[2][3] -0.003148 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 Y6V A 1 401 401 Y6V UNL . J 3 UNX A 1 402 2 UNX UNX . K 2 Y6V B 1 401 401 Y6V UNL . L 2 Y6V C 1 401 401 Y6V UNL . M 2 Y6V D 1 401 401 Y6V UNL . N 2 Y6V E 1 401 401 Y6V UNL . O 3 UNX E 1 402 1 UNX UNX . P 2 Y6V F 1 401 401 Y6V UNL . Q 2 Y6V G 1 401 401 Y6V UNL . R 2 Y6V H 1 401 401 Y6V UNL . S 4 HOH C 1 501 3 HOH HOH . S 4 HOH C 2 502 6 HOH HOH . S 4 HOH C 3 503 7 HOH HOH . S 4 HOH C 4 504 2 HOH HOH . S 4 HOH C 5 505 10 HOH HOH . T 4 HOH D 1 501 12 HOH HOH . T 4 HOH D 2 502 11 HOH HOH . T 4 HOH D 3 503 8 HOH HOH . T 4 HOH D 4 504 9 HOH HOH . U 4 HOH E 1 501 13 HOH HOH . U 4 HOH E 2 502 4 HOH HOH . V 4 HOH F 1 501 14 HOH HOH . W 4 HOH H 1 501 5 HOH HOH . W 4 HOH H 2 502 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 Y6V . . . M 2 0.353 -16.496 62.292 1 53.01 ? O1 Y6V 401 D 1 HETATM 2 C C1 Y6V . . . M 2 -0.772 -16.699 61.838 1 55.68 ? C1 Y6V 401 D 1 HETATM 3 N N1 Y6V . . . M 2 -1.29 -17.946 61.928 1 54.93 ? N1 Y6V 401 D 1 HETATM 4 C C2 Y6V . . . M 2 -0.396 -19.054 62.307 1 54.98 ? C2 Y6V 401 D 1 HETATM 5 C C3 Y6V . . . M 2 0.241 -19.675 61.097 1 57.07 ? C3 Y6V 401 D 1 HETATM 6 C C4 Y6V . . . M 2 0.363 -21.035 60.812 1 55.77 ? C4 Y6V 401 D 1 HETATM 7 C C5 Y6V . . . M 2 1.577 -21.215 60.08 1 55.91 ? C5 Y6V 401 D 1 HETATM 8 C C6 Y6V . . . M 2 2 -20.084 59.465 1 57.19 ? C6 Y6V 401 D 1 HETATM 9 S S1 Y6V . . . M 2 1.048 -18.747 59.901 1 59.59 ? S1 Y6V 401 D 1 HETATM 10 C C7 Y6V . . . M 2 -2.688 -18.256 61.565 1 54.77 ? C7 Y6V 401 D 1 HETATM 11 C C8 Y6V . . . M 2 -3.801 -17.615 62.318 1 54.69 ? C8 Y6V 401 D 1 HETATM 12 C C9 Y6V . . . M 2 -3.548 -19.069 62.471 1 54.29 ? C9 Y6V 401 D 1 HETATM 13 C C10 Y6V . . . M 2 -1.433 -15.561 61.122 1 55.06 ? C10 Y6V 401 D 1 HETATM 14 C C11 Y6V . . . M 2 -1.446 -14.278 61.688 1 52.64 ? C11 Y6V 401 D 1 HETATM 15 C C12 Y6V . . . M 2 -1.944 -13.203 60.977 1 53.08 ? C12 Y6V 401 D 1 HETATM 16 C C13 Y6V . . . M 2 -2.419 -13.393 59.676 1 52.8 ? C13 Y6V 401 D 1 HETATM 17 N N2 Y6V . . . M 2 -2.965 -12.345 58.912 1 54.15 ? N2 Y6V 401 D 1 HETATM 18 C C14 Y6V . . . M 2 -3.516 -12.555 57.703 1 54.45 ? C14 Y6V 401 D 1 HETATM 19 O O2 Y6V . . . M 2 -3.679 -11.645 56.897 1 53.12 ? O2 Y6V 401 D 1 HETATM 20 C C15 Y6V . . . M 2 -3.844 -13.983 57.362 1 52.3 ? C15 Y6V 401 D 1 HETATM 21 O O3 Y6V . . . M 2 -2.858 -14.908 57.848 1 49.8 ? O3 Y6V 401 D 1 HETATM 22 C C16 Y6V . . . M 2 -2.426 -14.672 59.124 1 49.68 ? C16 Y6V 401 D 1 HETATM 23 C C17 Y6V . . . M 2 -1.905 -15.737 59.817 1 50.56 ? C17 Y6V 401 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #