data_7MDP
#
_model_server_result.job_id            X1echgep5T8ZUs8u86Ioww 
_model_server_result.datetime_utc      '2024-11-27 12:12:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mdp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":304}' 
#
_entry.id    7MDP 
#
_exptl.entry_id    7MDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              296.357 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5,8,11,14,17-HEXAOXANONADECAN-19-OL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.29 
_cell.angle_gamma         90 
_cell.entry_id            7MDP 
_cell.length_a            149.365 
_cell.length_b            68.919 
_cell.length_c            100.543 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 K N N 
? 9 M N N 
? 9 O N N 
? 9 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
disulf ? disulf2 B SG CYS 149 H CYS 140 1_555 B SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 C SG CYS 21 I CYS 23 1_555 C SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 C SG CYS 137 I CYS 135 1_555 C SG CYS 196 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc1 A OG SER 17 A SER 17 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc2 E O1B GDP . A GDP 202 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc3 F MG MG . A MG 203 1_555 V O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc4 F MG MG . A MG 203 1_555 V O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc5 F MG MG . A MG 203 1_555 V O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc6 F MG MG . A MG 203 1_555 V O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
#
_chem_comp.formula           'C13 H28 O7' 
_chem_comp.formula_weight    296.357 
_chem_comp.id                P15 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5,8,11,14,17-HEXAOXANONADECAN-19-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 O6 P15 sing 317 n n 
C13 H131 P15 sing 318 n n 
C13 H132 P15 sing 319 n n 
C13 H133 P15 sing 320 n n 
O6 C12 P15 sing 321 n n 
C12 C11 P15 sing 322 n n 
C12 H121 P15 sing 323 n n 
C12 H122 P15 sing 324 n n 
C11 O5 P15 sing 325 n n 
C11 H111 P15 sing 326 n n 
C11 H112 P15 sing 327 n n 
O5 C10 P15 sing 328 n n 
C10 C9 P15 sing 329 n n 
C10 H101 P15 sing 330 n n 
C10 H102 P15 sing 331 n n 
C9 O4 P15 sing 332 n n 
C9 H91 P15 sing 333 n n 
C9 H92 P15 sing 334 n n 
O4 C8 P15 sing 335 n n 
C8 C7 P15 sing 336 n n 
C8 H81 P15 sing 337 n n 
C8 H82 P15 sing 338 n n 
C7 O3 P15 sing 339 n n 
C7 H71 P15 sing 340 n n 
C7 H72 P15 sing 341 n n 
O3 C6 P15 sing 342 n n 
C6 C5 P15 sing 343 n n 
C6 H61 P15 sing 344 n n 
C6 H62 P15 sing 345 n n 
C5 O2 P15 sing 346 n n 
C5 H51 P15 sing 347 n n 
C5 H52 P15 sing 348 n n 
O2 C4 P15 sing 349 n n 
C4 C3 P15 sing 350 n n 
C4 H41 P15 sing 351 n n 
C4 H42 P15 sing 352 n n 
C3 O1 P15 sing 353 n n 
C3 H31 P15 sing 354 n n 
C3 H32 P15 sing 355 n n 
O1 C2 P15 sing 356 n n 
C2 C1 P15 sing 357 n n 
C2 H21 P15 sing 358 n n 
C2 H22 P15 sing 359 n n 
C1 OXT P15 sing 360 n n 
C1 H11 P15 sing 361 n n 
C1 H12 P15 sing 362 n n 
OXT HOXT P15 sing 363 n n 
#
_atom_sites.entry_id                     7MDP 
_atom_sites.fract_transf_matrix[1][1]    0.006695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003022 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01451 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 Z07 A 1 201 1 Z07 LIG . 
E 5 GDP A 1 202 1 GDP GDP . 
F 6 MG A 1 203 1 MG MG . 
G 7 ACT A 1 204 102 ACT ACT . 
H 8 CAD H 1 301 201 CAD CAD . 
I 8 CAD H 1 302 202 CAD CAD . 
J 8 CAD H 1 303 203 CAD CAD . 
K 9 P15 H 1 304 204 P15 P15 . 
L 10 EDO H 1 305 206 EDO EDO . 
M 9 P15 H 1 306 209 P15 P15 . 
N 7 ACT H 1 307 307 ACT ACT . 
O 9 P15 H 1 308 311 P15 P15 . 
P 10 EDO H 1 309 312 EDO EDO . 
Q 10 EDO I 1 301 301 EDO EDO . 
R 10 EDO I 1 302 205 EDO EDO . 
S 8 CAD I 1 303 301 CAD CAD . 
T 11 DMS I 1 304 304 DMS DMS . 
U 9 P15 I 1 305 310 P15 P15 . 
V 12 HOH A 1 301 27 HOH HOH . 
V 12 HOH A 2 302 133 HOH HOH . 
V 12 HOH A 3 303 43 HOH HOH . 
V 12 HOH A 4 304 31 HOH HOH . 
V 12 HOH A 5 305 34 HOH HOH . 
V 12 HOH A 6 306 33 HOH HOH . 
V 12 HOH A 7 307 32 HOH HOH . 
W 12 HOH H 1 401 115 HOH HOH . 
W 12 HOH H 2 402 40 HOH HOH . 
W 12 HOH H 3 403 117 HOH HOH . 
W 12 HOH H 4 404 131 HOH HOH . 
W 12 HOH H 5 405 30 HOH HOH . 
W 12 HOH H 6 406 41 HOH HOH . 
W 12 HOH H 7 407 39 HOH HOH . 
W 12 HOH H 8 408 35 HOH HOH . 
W 12 HOH H 9 409 161 HOH HOH . 
W 12 HOH H 10 410 126 HOH HOH . 
W 12 HOH H 11 411 10 HOH HOH . 
W 12 HOH H 12 412 116 HOH HOH . 
W 12 HOH H 13 413 168 HOH HOH . 
W 12 HOH H 14 414 3 HOH HOH . 
W 12 HOH H 15 415 9 HOH HOH . 
W 12 HOH H 16 416 114 HOH HOH . 
W 12 HOH H 17 417 60 HOH HOH . 
W 12 HOH H 18 418 176 HOH HOH . 
W 12 HOH H 19 419 13 HOH HOH . 
W 12 HOH H 20 420 46 HOH HOH . 
W 12 HOH H 21 421 47 HOH HOH . 
W 12 HOH H 22 422 110 HOH HOH . 
W 12 HOH H 23 423 56 HOH HOH . 
W 12 HOH H 24 424 12 HOH HOH . 
W 12 HOH H 25 425 18 HOH HOH . 
W 12 HOH H 26 426 25 HOH HOH . 
W 12 HOH H 27 427 107 HOH HOH . 
W 12 HOH H 28 428 64 HOH HOH . 
W 12 HOH H 29 429 19 HOH HOH . 
W 12 HOH H 30 430 170 HOH HOH . 
W 12 HOH H 31 431 77 HOH HOH . 
W 12 HOH H 32 432 53 HOH HOH . 
W 12 HOH H 33 433 67 HOH HOH . 
W 12 HOH H 34 434 173 HOH HOH . 
W 12 HOH H 35 435 103 HOH HOH . 
W 12 HOH H 36 436 145 HOH HOH . 
W 12 HOH H 37 437 38 HOH HOH . 
W 12 HOH H 38 438 28 HOH HOH . 
W 12 HOH H 39 439 79 HOH HOH . 
W 12 HOH H 40 440 70 HOH HOH . 
W 12 HOH H 41 441 95 HOH HOH . 
W 12 HOH H 42 442 154 HOH HOH . 
W 12 HOH H 43 443 44 HOH HOH . 
W 12 HOH H 44 444 163 HOH HOH . 
W 12 HOH H 45 445 16 HOH HOH . 
W 12 HOH H 46 446 80 HOH HOH . 
W 12 HOH H 47 447 140 HOH HOH . 
W 12 HOH H 48 448 55 HOH HOH . 
W 12 HOH H 49 449 92 HOH HOH . 
W 12 HOH H 50 450 81 HOH HOH . 
W 12 HOH H 51 451 26 HOH HOH . 
W 12 HOH H 52 452 7 HOH HOH . 
W 12 HOH H 53 453 63 HOH HOH . 
W 12 HOH H 54 454 142 HOH HOH . 
W 12 HOH H 55 455 65 HOH HOH . 
W 12 HOH H 56 456 75 HOH HOH . 
W 12 HOH H 57 457 144 HOH HOH . 
W 12 HOH H 58 458 85 HOH HOH . 
W 12 HOH H 59 459 71 HOH HOH . 
W 12 HOH H 60 460 125 HOH HOH . 
W 12 HOH H 61 461 50 HOH HOH . 
W 12 HOH H 62 462 137 HOH HOH . 
W 12 HOH H 63 463 147 HOH HOH . 
W 12 HOH H 64 464 127 HOH HOH . 
W 12 HOH H 65 465 83 HOH HOH . 
W 12 HOH H 66 466 57 HOH HOH . 
W 12 HOH H 67 467 138 HOH HOH . 
W 12 HOH H 68 468 134 HOH HOH . 
X 12 HOH I 1 401 135 HOH HOH . 
X 12 HOH I 2 402 172 HOH HOH . 
X 12 HOH I 3 403 100 HOH HOH . 
X 12 HOH I 4 404 59 HOH HOH . 
X 12 HOH I 5 405 167 HOH HOH . 
X 12 HOH I 6 406 6 HOH HOH . 
X 12 HOH I 7 407 166 HOH HOH . 
X 12 HOH I 8 408 74 HOH HOH . 
X 12 HOH I 9 409 69 HOH HOH . 
X 12 HOH I 10 410 174 HOH HOH . 
X 12 HOH I 11 411 108 HOH HOH . 
X 12 HOH I 12 412 24 HOH HOH . 
X 12 HOH I 13 413 17 HOH HOH . 
X 12 HOH I 14 414 146 HOH HOH . 
X 12 HOH I 15 415 129 HOH HOH . 
X 12 HOH I 16 416 29 HOH HOH . 
X 12 HOH I 17 417 49 HOH HOH . 
X 12 HOH I 18 418 21 HOH HOH . 
X 12 HOH I 19 419 68 HOH HOH . 
X 12 HOH I 20 420 22 HOH HOH . 
X 12 HOH I 21 421 11 HOH HOH . 
X 12 HOH I 22 422 162 HOH HOH . 
X 12 HOH I 23 423 52 HOH HOH . 
X 12 HOH I 24 424 20 HOH HOH . 
X 12 HOH I 25 425 102 HOH HOH . 
X 12 HOH I 26 426 37 HOH HOH . 
X 12 HOH I 27 427 111 HOH HOH . 
X 12 HOH I 28 428 14 HOH HOH . 
X 12 HOH I 29 429 15 HOH HOH . 
X 12 HOH I 30 430 122 HOH HOH . 
X 12 HOH I 31 431 141 HOH HOH . 
X 12 HOH I 32 432 32 HOH HOH . 
X 12 HOH I 33 433 45 HOH HOH . 
X 12 HOH I 34 434 152 HOH HOH . 
X 12 HOH I 35 435 62 HOH HOH . 
X 12 HOH I 36 436 171 HOH HOH . 
X 12 HOH I 37 437 169 HOH HOH . 
X 12 HOH I 38 438 82 HOH HOH . 
X 12 HOH I 39 439 23 HOH HOH . 
X 12 HOH I 40 440 34 HOH HOH . 
X 12 HOH I 41 441 5 HOH HOH . 
X 12 HOH I 42 442 165 HOH HOH . 
X 12 HOH I 43 443 113 HOH HOH . 
X 12 HOH I 44 444 8 HOH HOH . 
X 12 HOH I 45 445 150 HOH HOH . 
X 12 HOH I 46 446 130 HOH HOH . 
X 12 HOH I 47 447 132 HOH HOH . 
X 12 HOH I 48 448 105 HOH HOH . 
X 12 HOH I 49 449 99 HOH HOH . 
X 12 HOH I 50 450 148 HOH HOH . 
X 12 HOH I 51 451 175 HOH HOH . 
X 12 HOH I 52 452 155 HOH HOH . 
X 12 HOH I 53 453 157 HOH HOH . 
X 12 HOH I 54 454 139 HOH HOH . 
X 12 HOH I 55 455 156 HOH HOH . 
X 12 HOH I 56 456 104 HOH HOH . 
X 12 HOH I 57 457 124 HOH HOH . 
X 12 HOH I 58 458 120 HOH HOH . 
X 12 HOH I 59 459 106 HOH HOH . 
X 12 HOH I 60 460 164 HOH HOH . 
X 12 HOH I 61 461 128 HOH HOH . 
X 12 HOH I 62 462 118 HOH HOH . 
X 12 HOH I 63 463 160 HOH HOH . 
X 12 HOH I 64 464 109 HOH HOH . 
X 12 HOH I 65 465 143 HOH HOH . 
X 12 HOH I 66 466 86 HOH HOH . 
X 12 HOH I 67 467 96 HOH HOH . 
X 12 HOH I 68 468 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 P15 . . . K 9 -23.031 41.25 25.615 1 76.12 ? C12 P15 304 H 1 
HETATM 2 C C11 P15 . . . K 9 -23.497 40.769 24.242 1 82.36 ? C11 P15 304 H 1 
HETATM 3 O O5 P15 . . . K 9 -23.045 39.429 24.03 1 86.64 ? O5 P15 304 H 1 
HETATM 4 C C10 P15 . . . K 9 -23.292 38.917 22.713 1 85.44 ? C10 P15 304 H 1 
HETATM 5 C C9 P15 . . . K 9 -22.142 37.99 22.308 1 80.86 ? C9 P15 304 H 1 
HETATM 6 O O4 P15 . . . K 9 -21.145 38.78 21.658 1 81.1 ? O4 P15 304 H 1 
HETATM 7 C C8 P15 . . . K 9 -19.888 38.826 22.345 1 79.62 ? C8 P15 304 H 1 
HETATM 8 C C7 P15 . . . K 9 -19.19 40.173 22.108 1 75.87 ? C7 P15 304 H 1 
HETATM 9 O O3 P15 . . . K 9 -19.59 41.13 23.092 1 77.31 ? O3 P15 304 H 1 
HETATM 10 C C6 P15 . . . K 9 -20.153 42.31 22.518 1 78.67 ? C6 P15 304 H 1 
HETATM 11 C C5 P15 . . . K 9 -20.805 43.164 23.601 1 79.62 ? C5 P15 304 H 1 
HETATM 12 O O2 P15 . . . K 9 -21.285 44.371 23.01 1 80.86 ? O2 P15 304 H 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#