data_7MDX # _model_server_result.job_id T3uuszs9TSuA30CgtFsrPA _model_server_result.datetime_utc '2024-12-03 18:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 7MDX # _exptl.entry_id 7MDX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 242.397 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTADECANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MDX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C DCY 1 E DCY 1 1_555 E N DSN 2 E DSN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 E N DCY 1 E DCY 1 1_555 F C1 F15 . E F15 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 E SG DCY 1 E DCY 1 1_555 G C19 ZM5 . E ZM5 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale4 E C DSN 2 E DSN 2 1_555 E N DAL 3 E DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale5 E C DAL 3 E DAL 3 1_555 E N DAL 4 E DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 E C DAL 4 E DAL 4 1_555 E N ALA 5 E ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C15 H30 O2' _chem_comp.formula_weight 242.397 _chem_comp.id F15 _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTADECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 F15 sing 121 n n C1 O3 F15 doub 122 n n C1 C4 F15 sing 123 n n O2 HO2 F15 sing 124 n n C4 C5 F15 sing 125 n n C4 H22 F15 sing 126 n n C4 H23 F15 sing 127 n n C5 C8 F15 sing 128 n n C5 H24 F15 sing 129 n n C5 H25 F15 sing 130 n n C6 C7 F15 sing 131 n n C6 C8 F15 sing 132 n n C6 H26 F15 sing 133 n n C6 H1 F15 sing 134 n n C7 C9 F15 sing 135 n n C7 H27 F15 sing 136 n n C7 H2 F15 sing 137 n n C8 H28 F15 sing 138 n n C8 H29 F15 sing 139 n n C9 C10 F15 sing 140 n n C9 H30 F15 sing 141 n n C9 H31 F15 sing 142 n n C10 C11 F15 sing 143 n n C10 H33 F15 sing 144 n n C10 H5 F15 sing 145 n n C11 C12 F15 sing 146 n n C11 H34 F15 sing 147 n n C11 H6 F15 sing 148 n n C12 C13 F15 sing 149 n n C12 H36 F15 sing 150 n n C12 H37 F15 sing 151 n n C13 C2 F15 sing 152 n n C13 H3 F15 sing 153 n n C13 H4 F15 sing 154 n n C2 C3 F15 sing 155 n n C2 H7 F15 sing 156 n n C2 H8 F15 sing 157 n n C3 C14 F15 sing 158 n n C3 H9 F15 sing 159 n n C3 H10 F15 sing 160 n n C14 C15 F15 sing 161 n n C14 H11 F15 sing 162 n n C14 H12 F15 sing 163 n n C15 H13 F15 sing 164 n n C15 H14 F15 sing 165 n n C15 H15 F15 sing 166 n n # _atom_sites.entry_id 7MDX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 F15 E 1 101 501 F15 LIG . G 6 ZM5 E 1 102 501 ZM5 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F15 . . . F 5 99.44 94.613 129.054 1 99.31 ? C1 F15 101 E 1 HETATM 2 O O2 F15 . . . F 5 99.675 94.734 130.208 1 99.31 ? O2 F15 101 E 1 HETATM 3 C C4 F15 . . . F 5 98.347 93.653 128.59 1 99.31 ? C4 F15 101 E 1 HETATM 4 C C5 F15 . . . F 5 98.407 93.387 127.087 1 99.31 ? C5 F15 101 E 1 HETATM 5 C C6 F15 . . . F 5 99.599 92.07 125.264 1 99.31 ? C6 F15 101 E 1 HETATM 6 C C7 F15 . . . F 5 100.938 91.369 125.035 1 99.31 ? C7 F15 101 E 1 HETATM 7 C C8 F15 . . . F 5 99.269 92.174 126.751 1 99.31 ? C8 F15 101 E 1 HETATM 8 C C9 F15 . . . F 5 101.028 90.673 123.678 1 99.31 ? C9 F15 101 E 1 HETATM 9 C C10 F15 . . . F 5 102.317 89.86 123.552 1 99.31 ? C10 F15 101 E 1 HETATM 10 C C11 F15 . . . F 5 102.188 88.677 122.593 1 99.31 ? C11 F15 101 E 1 HETATM 11 C C12 F15 . . . F 5 103.326 87.673 122.778 1 99.31 ? C12 F15 101 E 1 HETATM 12 C C13 F15 . . . F 5 103.064 86.34 122.077 1 99.31 ? C13 F15 101 E 1 HETATM 13 C C2 F15 . . . F 5 102.753 86.506 120.59 1 99.31 ? C2 F15 101 E 1 HETATM 14 C C3 F15 . . . F 5 103.15 85.27 119.783 1 99.31 ? C3 F15 101 E 1 HETATM 15 C C14 F15 . . . F 5 103.11 85.516 118.275 1 99.31 ? C14 F15 101 E 1 HETATM 16 C C15 F15 . . . F 5 104.124 84.658 117.519 1 99.31 ? C15 F15 101 E 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #