data_7MDX # _model_server_result.job_id Tzpb7rmmAsYIOAxvfl5ryA _model_server_result.datetime_utc '2025-03-29 19:09:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 7MDX # _exptl.entry_id 7MDX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 526.832 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-(tridecanoyloxy)propyl hexadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MDX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C DCY 1 E DCY 1 1_555 E N DSN 2 E DSN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 E N DCY 1 E DCY 1 1_555 F C1 F15 . E F15 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 E SG DCY 1 E DCY 1 1_555 G C19 ZM5 . E ZM5 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale4 E C DSN 2 E DSN 2 1_555 E N DAL 3 E DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale5 E C DAL 3 E DAL 3 1_555 E N DAL 4 E DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 E C DAL 4 E DAL 4 1_555 E N ALA 5 E ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C32 H62 O5' _chem_comp.formula_weight 526.832 _chem_comp.id ZM5 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-(tridecanoyloxy)propyl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3-oxidanyl-2-tridecanoyloxy-propyl) hexadecanoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ZM5 sing 458 n n C2 C3 ZM5 sing 459 n n C3 C4 ZM5 sing 460 n n C4 C5 ZM5 sing 461 n n C5 C6 ZM5 sing 462 n n C6 C7 ZM5 sing 463 n n C7 C8 ZM5 sing 464 n n C8 C9 ZM5 sing 465 n n C9 C10 ZM5 sing 466 n n C10 C11 ZM5 sing 467 n n C11 C12 ZM5 sing 468 n n C12 C13 ZM5 sing 469 n n C13 C14 ZM5 sing 470 n n C14 C15 ZM5 sing 471 n n C15 C16 ZM5 sing 472 n n C16 O1 ZM5 doub 473 n n C16 O2 ZM5 sing 474 n n O2 C17 ZM5 sing 475 n n C17 C18 ZM5 sing 476 n n C18 C19 ZM5 sing 477 n n C19 O3 ZM5 sing 478 n n C18 O4 ZM5 sing 479 n n O4 C20 ZM5 sing 480 n n C20 O5 ZM5 doub 481 n n C20 C21 ZM5 sing 482 n n C21 C22 ZM5 sing 483 n n C22 C23 ZM5 sing 484 n n C23 C24 ZM5 sing 485 n n C24 C25 ZM5 sing 486 n n C25 C26 ZM5 sing 487 n n C26 C27 ZM5 sing 488 n n C27 C28 ZM5 sing 489 n n C28 C29 ZM5 sing 490 n n C29 C30 ZM5 sing 491 n n C30 C31 ZM5 sing 492 n n C31 C32 ZM5 sing 493 n n C1 H1 ZM5 sing 494 n n C1 H2 ZM5 sing 495 n n C1 H3 ZM5 sing 496 n n C2 H4 ZM5 sing 497 n n C2 H5 ZM5 sing 498 n n C3 H6 ZM5 sing 499 n n C3 H7 ZM5 sing 500 n n C4 H8 ZM5 sing 501 n n C4 H9 ZM5 sing 502 n n C5 H10 ZM5 sing 503 n n C5 H11 ZM5 sing 504 n n C6 H12 ZM5 sing 505 n n C6 H13 ZM5 sing 506 n n C7 H14 ZM5 sing 507 n n C7 H15 ZM5 sing 508 n n C8 H16 ZM5 sing 509 n n C8 H17 ZM5 sing 510 n n C9 H18 ZM5 sing 511 n n C9 H19 ZM5 sing 512 n n C10 H20 ZM5 sing 513 n n C10 H21 ZM5 sing 514 n n C11 H22 ZM5 sing 515 n n C11 H23 ZM5 sing 516 n n C12 H24 ZM5 sing 517 n n C12 H25 ZM5 sing 518 n n C13 H26 ZM5 sing 519 n n C13 H27 ZM5 sing 520 n n C14 H28 ZM5 sing 521 n n C14 H29 ZM5 sing 522 n n C15 H30 ZM5 sing 523 n n C15 H31 ZM5 sing 524 n n C17 H32 ZM5 sing 525 n n C17 H33 ZM5 sing 526 n n C18 H34 ZM5 sing 527 n n C19 H35 ZM5 sing 528 n n C19 H36 ZM5 sing 529 n n O3 H37 ZM5 sing 530 n n C21 H38 ZM5 sing 531 n n C21 H39 ZM5 sing 532 n n C22 H40 ZM5 sing 533 n n C22 H41 ZM5 sing 534 n n C23 H42 ZM5 sing 535 n n C23 H43 ZM5 sing 536 n n C24 H44 ZM5 sing 537 n n C24 H45 ZM5 sing 538 n n C25 H46 ZM5 sing 539 n n C25 H47 ZM5 sing 540 n n C26 H48 ZM5 sing 541 n n C26 H49 ZM5 sing 542 n n C27 H50 ZM5 sing 543 n n C27 H51 ZM5 sing 544 n n C28 H52 ZM5 sing 545 n n C28 H53 ZM5 sing 546 n n C29 H54 ZM5 sing 547 n n C29 H55 ZM5 sing 548 n n C30 H56 ZM5 sing 549 n n C30 H57 ZM5 sing 550 n n C31 H58 ZM5 sing 551 n n C31 H59 ZM5 sing 552 n n C32 H60 ZM5 sing 553 n n C32 H61 ZM5 sing 554 n n C32 H62 ZM5 sing 555 n n # _atom_sites.entry_id 7MDX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 F15 E 1 101 501 F15 LIG . G 6 ZM5 E 1 102 501 ZM5 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZM5 . . . G 6 104.427 87.066 111.917 1 99.31 ? C1 ZM5 102 E 1 HETATM 2 C C2 ZM5 . . . G 6 103.747 86.993 113.282 1 99.31 ? C2 ZM5 102 E 1 HETATM 3 C C3 ZM5 . . . G 6 102.55 87.935 113.387 1 99.31 ? C3 ZM5 102 E 1 HETATM 4 C C4 ZM5 . . . G 6 101.81 87.774 114.711 1 99.31 ? C4 ZM5 102 E 1 HETATM 5 C C5 ZM5 . . . G 6 100.363 88.254 114.633 1 99.31 ? C5 ZM5 102 E 1 HETATM 6 C C6 ZM5 . . . G 6 99.718 88.412 116.009 1 99.31 ? C6 ZM5 102 E 1 HETATM 7 C C7 ZM5 . . . G 6 100.302 87.456 117.047 1 99.31 ? C7 ZM5 102 E 1 HETATM 8 C C8 ZM5 . . . G 6 100.036 87.902 118.484 1 99.31 ? C8 ZM5 102 E 1 HETATM 9 C C9 ZM5 . . . G 6 98.62 88.433 118.694 1 99.31 ? C9 ZM5 102 E 1 HETATM 10 C C10 ZM5 . . . G 6 98.617 89.772 119.427 1 99.31 ? C10 ZM5 102 E 1 HETATM 11 C C11 ZM5 . . . G 6 99.442 90.818 118.684 1 99.31 ? C11 ZM5 102 E 1 HETATM 12 C C12 ZM5 . . . G 6 100.066 91.85 119.619 1 99.31 ? C12 ZM5 102 E 1 HETATM 13 C C13 ZM5 . . . G 6 101.587 91.731 119.648 1 99.31 ? C13 ZM5 102 E 1 HETATM 14 C C14 ZM5 . . . G 6 102.269 93.096 119.677 1 99.31 ? C14 ZM5 102 E 1 HETATM 15 C C15 ZM5 . . . G 6 103 93.335 120.995 1 99.31 ? C15 ZM5 102 E 1 HETATM 16 C C16 ZM5 . . . G 6 102.353 94.457 121.8 1 99.31 ? C16 ZM5 102 E 1 HETATM 17 O O1 ZM5 . . . G 6 101.268 94.835 121.512 1 99.31 ? O1 ZM5 102 E 1 HETATM 18 O O2 ZM5 . . . G 6 103.046 95.035 122.868 1 99.31 ? O2 ZM5 102 E 1 HETATM 19 C C17 ZM5 . . . G 6 102.235 95.659 123.82 1 99.31 ? C17 ZM5 102 E 1 HETATM 20 C C18 ZM5 . . . G 6 102.208 97.152 123.509 1 99.31 ? C18 ZM5 102 E 1 HETATM 21 C C19 ZM5 . . . G 6 101.949 98.007 124.746 1 99.31 ? C19 ZM5 102 E 1 HETATM 22 O O4 ZM5 . . . G 6 103.474 97.491 123.026 1 99.31 ? O4 ZM5 102 E 1 HETATM 23 C C20 ZM5 . . . G 6 103.519 98.713 122.354 1 99.31 ? C20 ZM5 102 E 1 HETATM 24 O O5 ZM5 . . . G 6 102.609 99.05 121.677 1 99.31 ? O5 ZM5 102 E 1 HETATM 25 C C21 ZM5 . . . G 6 104.739 99.618 122.488 1 99.31 ? C21 ZM5 102 E 1 HETATM 26 C C22 ZM5 . . . G 6 104.986 100.401 121.203 1 99.31 ? C22 ZM5 102 E 1 HETATM 27 C C23 ZM5 . . . G 6 104.72 101.892 121.383 1 99.31 ? C23 ZM5 102 E 1 HETATM 28 C C24 ZM5 . . . G 6 104.538 102.601 120.044 1 99.31 ? C24 ZM5 102 E 1 HETATM 29 C C25 ZM5 . . . G 6 103.171 103.274 119.932 1 99.31 ? C25 ZM5 102 E 1 HETATM 30 C C26 ZM5 . . . G 6 103.223 104.622 119.214 1 99.31 ? C26 ZM5 102 E 1 HETATM 31 C C27 ZM5 . . . G 6 104.63 105.012 118.761 1 99.31 ? C27 ZM5 102 E 1 HETATM 32 C C28 ZM5 . . . G 6 104.626 105.773 117.437 1 99.31 ? C28 ZM5 102 E 1 HETATM 33 C C29 ZM5 . . . G 6 103.477 106.774 117.347 1 99.31 ? C29 ZM5 102 E 1 HETATM 34 C C30 ZM5 . . . G 6 103.533 107.626 116.081 1 99.31 ? C30 ZM5 102 E 1 HETATM 35 C C31 ZM5 . . . G 6 104.181 106.899 114.906 1 99.31 ? C31 ZM5 102 E 1 HETATM 36 C C32 ZM5 . . . G 6 103.872 107.569 113.57 1 99.31 ? C32 ZM5 102 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #