data_7MDY
#
_model_server_result.job_id            POkJe1WgNw86tABPMfhqoA 
_model_server_result.datetime_utc      '2025-07-03 23:03:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    7MDY 
#
_exptl.entry_id    7MDY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              544.156 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADP ORTHOVANADATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MDY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OE1 GLN 92 D GLN 94 1_555 F MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc2 E O1B AOV . D AOV 301 1_555 F MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc3 E O4G AOV . D AOV 301 1_555 F MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc4 D OG SER 47 C SER 49 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc5 D OE1 GLN 92 C GLN 94 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc6 G O4G AOV . C AOV 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
#
_chem_comp.formula           'C10 H17 N5 O14 P2 V' 
_chem_comp.formula_weight    544.156 
_chem_comp.id                AOV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADP ORTHOVANADATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B AOV doub 13 n n 
PB O2B AOV sing 14 n n 
PB O3B AOV sing 15 n n 
PB O3A AOV sing 16 n n 
O3B VG AOV sing 17 n n 
PA O1A AOV doub 18 n n 
PA O2A AOV sing 19 n n 
PA O3A AOV sing 20 n n 
PA O5' AOV sing 21 n n 
O5' C5' AOV sing 22 n n 
C5' C4' AOV sing 23 n n 
C4' O4' AOV sing 24 n n 
C4' C3' AOV sing 25 n n 
O4' C1' AOV sing 26 n n 
C3' O3' AOV sing 27 n n 
C3' C2' AOV sing 28 n n 
C2' O2' AOV sing 29 n n 
C2' C1' AOV sing 30 n n 
C1' N9 AOV sing 31 n n 
N9 C8 AOV sing 32 n y 
N9 C4 AOV sing 33 n y 
C8 N7 AOV doub 34 n y 
N7 C5 AOV sing 35 n y 
C5 C6 AOV sing 36 n y 
C5 C4 AOV doub 37 n y 
C6 N6 AOV sing 38 n n 
C6 N1 AOV doub 39 n y 
N1 C2 AOV sing 40 n y 
C2 N3 AOV doub 41 n y 
N3 C4 AOV sing 42 n y 
VG O1G AOV doub 43 n n 
VG O2G AOV sing 44 n n 
VG O3G AOV sing 45 n n 
VG O4G AOV sing 46 n n 
O2B H2B AOV sing 47 n n 
O2A H2A AOV sing 48 n n 
C5' "H5'1" AOV sing 49 n n 
C5' "H5'2" AOV sing 50 n n 
C4' H4' AOV sing 51 n n 
C3' H3' AOV sing 52 n n 
C1' H1' AOV sing 53 n n 
O3' HA AOV sing 54 n n 
C2' H2' AOV sing 55 n n 
O2' HB AOV sing 56 n n 
C8 H8 AOV sing 57 n n 
N6 H61N AOV sing 58 n n 
N6 H62N AOV sing 59 n n 
C2 H2 AOV sing 60 n n 
O2G H2G1 AOV sing 61 n n 
O3G H3G1 AOV sing 62 n n 
O4G H4G1 AOV sing 63 n n 
#
_atom_sites.entry_id                     7MDY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 AOV D 1 301 301 AOV LIG . 
F 5 MG D 1 302 2 MG MG . 
G 4 AOV C 1 301 301 AOV LIG . 
H 5 MG C 1 302 1 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB AOV . . . E 4 125.082 103.527 58.663 1 36.88 ? PB AOV 301 D 1 
HETATM 2 O O1B AOV . . . E 4 124.068 104.645 58.7 1 36.88 ? O1B AOV 301 D 1 
HETATM 3 O O2B AOV . . . E 4 126.343 104.007 57.98 1 36.88 ? O2B AOV 301 D 1 
HETATM 4 O O3B AOV . . . E 4 124.456 102.241 57.837 1 36.88 ? O3B AOV 301 D 1 
HETATM 5 P PA AOV . . . E 4 126.042 104.099 61.349 1 36.88 ? PA AOV 301 D 1 
HETATM 6 O O1A AOV . . . E 4 125.774 105.527 60.934 1 36.88 ? O1A AOV 301 D 1 
HETATM 7 O O2A AOV . . . E 4 125.373 103.828 62.677 1 36.88 ? O2A AOV 301 D 1 
HETATM 8 O O3A AOV . . . E 4 125.435 103.064 60.21 1 36.88 ? O3A AOV 301 D 1 
HETATM 9 O O5' AOV . . . E 4 127.676 103.849 61.489 1 36.88 ? O5' AOV 301 D 1 
HETATM 10 C C5' AOV . . . E 4 128.283 104.108 62.738 1 36.88 ? C5' AOV 301 D 1 
HETATM 11 C C4' AOV . . . E 4 129.65 103.392 62.789 1 36.88 ? C4' AOV 301 D 1 
HETATM 12 O O4' AOV . . . E 4 130.371 103.731 64.139 1 36.88 ? O4' AOV 301 D 1 
HETATM 13 C C3' AOV . . . E 4 129.5 102.089 62.806 1 36.88 ? C3' AOV 301 D 1 
HETATM 14 O O3' AOV . . . E 4 130.658 101.454 62.255 1 36.88 ? O3' AOV 301 D 1 
HETATM 15 C C2' AOV . . . E 4 129.342 101.68 64.412 1 36.88 ? C2' AOV 301 D 1 
HETATM 16 O O2' AOV . . . E 4 129.691 100.299 64.593 1 36.88 ? O2' AOV 301 D 1 
HETATM 17 C C1' AOV . . . E 4 130.19 102.446 65.049 1 36.88 ? C1' AOV 301 D 1 
HETATM 18 N N9 AOV . . . E 4 129.706 102.85 66.376 1 36.88 ? N9 AOV 301 D 1 
HETATM 19 C C8 AOV . . . E 4 128.61 103.545 66.656 1 36.88 ? C8 AOV 301 D 1 
HETATM 20 N N7 AOV . . . E 4 128.507 103.724 67.968 1 36.88 ? N7 AOV 301 D 1 
HETATM 21 C C5 AOV . . . E 4 129.565 103.141 68.561 1 36.88 ? C5 AOV 301 D 1 
HETATM 22 C C6 AOV . . . E 4 130.022 102.989 69.883 1 36.88 ? C6 AOV 301 D 1 
HETATM 23 N N6 AOV . . . E 4 129.251 103.555 70.99 1 36.88 ? N6 AOV 301 D 1 
HETATM 24 N N1 AOV . . . E 4 131.15 102.333 70.124 1 36.88 ? N1 AOV 301 D 1 
HETATM 25 C C2 AOV . . . E 4 131.856 101.815 69.123 1 36.88 ? C2 AOV 301 D 1 
HETATM 26 N N3 AOV . . . E 4 131.453 101.942 67.864 1 36.88 ? N3 AOV 301 D 1 
HETATM 27 C C4 AOV . . . E 4 130.322 102.593 67.546 1 36.88 ? C4 AOV 301 D 1 
HETATM 28 V VG AOV . . . E 4 122.566 101.78 58.645 1 36.88 ? VG AOV 301 D 1 
HETATM 29 O O1G AOV . . . E 4 121.95 102.335 56.71 1 36.88 ? O1G AOV 301 D 1 
HETATM 30 O O2G AOV . . . E 4 123.654 100.175 59.466 1 36.88 ? O2G AOV 301 D 1 
HETATM 31 O O3G AOV . . . E 4 121.138 100.262 58.342 1 36.88 ? O3G AOV 301 D 1 
HETATM 32 O O4G AOV . . . E 4 121.967 103.172 60.106 1 36.88 ? O4G AOV 301 D 1 
HETATM 33 H "H5'1" AOV . . . E 4 127.646 103.74 63.539 1 36.88 ? "H5'1" AOV 301 D 1 
HETATM 34 H "H5'2" AOV . . . E 4 128.429 105.18 62.853 1 36.88 ? "H5'2" AOV 301 D 1 
HETATM 35 H H4' AOV . . . E 4 130.275 103.686 61.945 1 36.88 ? H4' AOV 301 D 1 
HETATM 36 H H3' AOV . . . E 4 128.608 101.799 62.255 1 36.88 ? H3' AOV 301 D 1 
HETATM 37 H H1' AOV . . . E 4 131.145 101.929 65.145 1 36.88 ? H1' AOV 301 D 1 
HETATM 38 H HA AOV . . . E 4 130.708 100.565 62.579 1 36.88 ? HA AOV 301 D 1 
HETATM 39 H H2' AOV . . . E 4 128.322 101.856 64.737 1 36.88 ? H2' AOV 301 D 1 
HETATM 40 H HB AOV . . . E 4 129.244 99.777 63.94 1 36.88 ? HB AOV 301 D 1 
HETATM 41 H H8 AOV . . . E 4 127.896 103.904 65.92 1 36.88 ? H8 AOV 301 D 1 
HETATM 42 H H61N AOV . . . E 4 129.715 103.828 71.839 1 36.88 ? H61N AOV 301 D 1 
HETATM 43 H H62N AOV . . . E 4 128.257 103.671 70.9 1 36.88 ? H62N AOV 301 D 1 
HETATM 44 H H2 AOV . . . E 4 132.778 101.28 69.339 1 36.88 ? H2 AOV 301 D 1 
HETATM 45 H H2G1 AOV . . . E 4 124.571 100.284 59.266 1 36.88 ? H2G1 AOV 301 D 1 
HETATM 46 H H3G1 AOV . . . E 4 121.517 99.429 58.573 1 36.88 ? H3G1 AOV 301 D 1 
HETATM 47 H H251 AOV . . . E 4 122.709 102.417 56.155 1 36.88 ? H251 AOV 301 D 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           47 
#