data_7ME5 # _model_server_result.job_id gjPrd7o-wn4v9BtifP3QYg _model_server_result.datetime_utc '2024-10-20 00:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7me5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7ME5 # _exptl.entry_id 7ME5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ME5 _cell.length_a 56.978 _cell.length_b 91.583 _cell.length_c 76.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ME5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 A CYS 125 1_555 A SG CYS 135 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 144 A ASN 169 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7ME5 _atom_sites.fract_transf_matrix[1][1] 0.017551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 1 NAG NAG . C 3 HOH A 1 301 60 HOH HOH . C 3 HOH A 2 302 103 HOH HOH . C 3 HOH A 3 303 61 HOH HOH . C 3 HOH A 4 304 91 HOH HOH . C 3 HOH A 5 305 98 HOH HOH . C 3 HOH A 6 306 58 HOH HOH . C 3 HOH A 7 307 113 HOH HOH . C 3 HOH A 8 308 36 HOH HOH . C 3 HOH A 9 309 7 HOH HOH . C 3 HOH A 10 310 101 HOH HOH . C 3 HOH A 11 311 32 HOH HOH . C 3 HOH A 12 312 97 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 102 HOH HOH . C 3 HOH A 15 315 55 HOH HOH . C 3 HOH A 16 316 4 HOH HOH . C 3 HOH A 17 317 84 HOH HOH . C 3 HOH A 18 318 3 HOH HOH . C 3 HOH A 19 319 94 HOH HOH . C 3 HOH A 20 320 11 HOH HOH . C 3 HOH A 21 321 63 HOH HOH . C 3 HOH A 22 322 87 HOH HOH . C 3 HOH A 23 323 21 HOH HOH . C 3 HOH A 24 324 15 HOH HOH . C 3 HOH A 25 325 78 HOH HOH . C 3 HOH A 26 326 5 HOH HOH . C 3 HOH A 27 327 88 HOH HOH . C 3 HOH A 28 328 54 HOH HOH . C 3 HOH A 29 329 69 HOH HOH . C 3 HOH A 30 330 107 HOH HOH . C 3 HOH A 31 331 1 HOH HOH . C 3 HOH A 32 332 80 HOH HOH . C 3 HOH A 33 333 79 HOH HOH . C 3 HOH A 34 334 10 HOH HOH . C 3 HOH A 35 335 100 HOH HOH . C 3 HOH A 36 336 67 HOH HOH . C 3 HOH A 37 337 112 HOH HOH . C 3 HOH A 38 338 34 HOH HOH . C 3 HOH A 39 339 24 HOH HOH . C 3 HOH A 40 340 83 HOH HOH . C 3 HOH A 41 341 12 HOH HOH . C 3 HOH A 42 342 92 HOH HOH . C 3 HOH A 43 343 8 HOH HOH . C 3 HOH A 44 344 18 HOH HOH . C 3 HOH A 45 345 14 HOH HOH . C 3 HOH A 46 346 89 HOH HOH . C 3 HOH A 47 347 85 HOH HOH . C 3 HOH A 48 348 2 HOH HOH . C 3 HOH A 49 349 6 HOH HOH . C 3 HOH A 50 350 82 HOH HOH . C 3 HOH A 51 351 99 HOH HOH . C 3 HOH A 52 352 49 HOH HOH . C 3 HOH A 53 353 81 HOH HOH . C 3 HOH A 54 354 30 HOH HOH . C 3 HOH A 55 355 40 HOH HOH . C 3 HOH A 56 356 109 HOH HOH . C 3 HOH A 57 357 95 HOH HOH . C 3 HOH A 58 358 20 HOH HOH . C 3 HOH A 59 359 33 HOH HOH . C 3 HOH A 60 360 90 HOH HOH . C 3 HOH A 61 361 51 HOH HOH . C 3 HOH A 62 362 26 HOH HOH . C 3 HOH A 63 363 29 HOH HOH . C 3 HOH A 64 364 42 HOH HOH . C 3 HOH A 65 365 86 HOH HOH . C 3 HOH A 66 366 39 HOH HOH . C 3 HOH A 67 367 37 HOH HOH . C 3 HOH A 68 368 93 HOH HOH . C 3 HOH A 69 369 46 HOH HOH . C 3 HOH A 70 370 76 HOH HOH . C 3 HOH A 71 371 23 HOH HOH . C 3 HOH A 72 372 57 HOH HOH . C 3 HOH A 73 373 110 HOH HOH . C 3 HOH A 74 374 9 HOH HOH . C 3 HOH A 75 375 31 HOH HOH . C 3 HOH A 76 376 53 HOH HOH . C 3 HOH A 77 377 19 HOH HOH . C 3 HOH A 78 378 38 HOH HOH . C 3 HOH A 79 379 27 HOH HOH . C 3 HOH A 80 380 52 HOH HOH . C 3 HOH A 81 381 104 HOH HOH . C 3 HOH A 82 382 64 HOH HOH . C 3 HOH A 83 383 48 HOH HOH . C 3 HOH A 84 384 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 25.053 11.561 -26.815 1 90.2 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . B 2 23.806 11.605 -27.681 1 80.19 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . B 2 24.149 11.125 -29.09 1 82.22 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . B 2 25.372 11.858 -29.638 1 73.9 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . B 2 26.51 11.931 -28.614 1 81.46 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . B 2 27.632 12.852 -29.033 1 86.63 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . B 2 22.032 11.185 -26.038 1 78.61 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . B 2 20.958 10.242 -25.585 1 65.22 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . B 2 22.734 10.805 -27.111 1 80.69 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . B 2 23.03 11.335 -29.944 1 63.08 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . B 2 25.861 11.166 -30.782 1 86.7 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . B 2 26.027 12.418 -27.354 1 80.95 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . B 2 28.846 12.14 -29.227 1 76.86 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . B 2 22.26 12.24 -25.454 1 87.69 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #