data_7ME9 # _model_server_result.job_id uY2Zsgv2-lD6acKk-WJvxw _model_server_result.datetime_utc '2024-11-16 06:24:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7me9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 7ME9 # _exptl.entry_id 7ME9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ME9 _cell.length_a 123.489 _cell.length_b 123.489 _cell.length_c 123.489 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ME9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 45 A PHE 104 1_555 A N KCX 46 A KCX 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C KCX 46 A KCX 105 1_555 A N ILE 47 A ILE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 263 n n C1 H11 MPD sing 264 n n C1 H12 MPD sing 265 n n C1 H13 MPD sing 266 n n C2 O2 MPD sing 267 n n C2 CM MPD sing 268 n n C2 C3 MPD sing 269 n n O2 HO2 MPD sing 270 n n CM HM1 MPD sing 271 n n CM HM2 MPD sing 272 n n CM HM3 MPD sing 273 n n C3 C4 MPD sing 274 n n C3 H31 MPD sing 275 n n C3 H32 MPD sing 276 n n C4 O4 MPD sing 277 n n C4 C5 MPD sing 278 n n C4 H4 MPD sing 279 n n O4 HO4 MPD sing 280 n n C5 H51 MPD sing 281 n n C5 H52 MPD sing 282 n n C5 H53 MPD sing 283 n n # _atom_sites.entry_id 7ME9 _atom_sites.fract_transf_matrix[1][1] 0.008098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 2 SO4 A 1 403 4 SO4 SO4 . E 2 SO4 A 1 404 5 SO4 SO4 . F 2 SO4 A 1 405 6 SO4 SO4 . G 3 MPD A 1 406 1 MPD MPD . H 4 HOH A 1 501 97 HOH HOH . H 4 HOH A 2 502 226 HOH HOH . H 4 HOH A 3 503 161 HOH HOH . H 4 HOH A 4 504 137 HOH HOH . H 4 HOH A 5 505 48 HOH HOH . H 4 HOH A 6 506 113 HOH HOH . H 4 HOH A 7 507 37 HOH HOH . H 4 HOH A 8 508 101 HOH HOH . H 4 HOH A 9 509 74 HOH HOH . H 4 HOH A 10 510 169 HOH HOH . H 4 HOH A 11 511 202 HOH HOH . H 4 HOH A 12 512 196 HOH HOH . H 4 HOH A 13 513 91 HOH HOH . H 4 HOH A 14 514 157 HOH HOH . H 4 HOH A 15 515 41 HOH HOH . H 4 HOH A 16 516 174 HOH HOH . H 4 HOH A 17 517 17 HOH HOH . H 4 HOH A 18 518 129 HOH HOH . H 4 HOH A 19 519 204 HOH HOH . H 4 HOH A 20 520 116 HOH HOH . H 4 HOH A 21 521 141 HOH HOH . H 4 HOH A 22 522 139 HOH HOH . H 4 HOH A 23 523 24 HOH HOH . H 4 HOH A 24 524 152 HOH HOH . H 4 HOH A 25 525 58 HOH HOH . H 4 HOH A 26 526 167 HOH HOH . H 4 HOH A 27 527 118 HOH HOH . H 4 HOH A 28 528 205 HOH HOH . H 4 HOH A 29 529 80 HOH HOH . H 4 HOH A 30 530 65 HOH HOH . H 4 HOH A 31 531 46 HOH HOH . H 4 HOH A 32 532 160 HOH HOH . H 4 HOH A 33 533 8 HOH HOH . H 4 HOH A 34 534 199 HOH HOH . H 4 HOH A 35 535 115 HOH HOH . H 4 HOH A 36 536 87 HOH HOH . H 4 HOH A 37 537 120 HOH HOH . H 4 HOH A 38 538 10 HOH HOH . H 4 HOH A 39 539 13 HOH HOH . H 4 HOH A 40 540 43 HOH HOH . H 4 HOH A 41 541 125 HOH HOH . H 4 HOH A 42 542 131 HOH HOH . H 4 HOH A 43 543 84 HOH HOH . H 4 HOH A 44 544 138 HOH HOH . H 4 HOH A 45 545 163 HOH HOH . H 4 HOH A 46 546 144 HOH HOH . H 4 HOH A 47 547 35 HOH HOH . H 4 HOH A 48 548 26 HOH HOH . H 4 HOH A 49 549 201 HOH HOH . H 4 HOH A 50 550 147 HOH HOH . H 4 HOH A 51 551 71 HOH HOH . H 4 HOH A 52 552 29 HOH HOH . H 4 HOH A 53 553 114 HOH HOH . H 4 HOH A 54 554 39 HOH HOH . H 4 HOH A 55 555 27 HOH HOH . H 4 HOH A 56 556 111 HOH HOH . H 4 HOH A 57 557 50 HOH HOH . H 4 HOH A 58 558 153 HOH HOH . H 4 HOH A 59 559 55 HOH HOH . H 4 HOH A 60 560 54 HOH HOH . H 4 HOH A 61 561 11 HOH HOH . H 4 HOH A 62 562 166 HOH HOH . H 4 HOH A 63 563 33 HOH HOH . H 4 HOH A 64 564 22 HOH HOH . H 4 HOH A 65 565 21 HOH HOH . H 4 HOH A 66 566 181 HOH HOH . H 4 HOH A 67 567 32 HOH HOH . H 4 HOH A 68 568 20 HOH HOH . H 4 HOH A 69 569 12 HOH HOH . H 4 HOH A 70 570 16 HOH HOH . H 4 HOH A 71 571 30 HOH HOH . H 4 HOH A 72 572 148 HOH HOH . H 4 HOH A 73 573 18 HOH HOH . H 4 HOH A 74 574 14 HOH HOH . H 4 HOH A 75 575 31 HOH HOH . H 4 HOH A 76 576 77 HOH HOH . H 4 HOH A 77 577 105 HOH HOH . H 4 HOH A 78 578 103 HOH HOH . H 4 HOH A 79 579 63 HOH HOH . H 4 HOH A 80 580 19 HOH HOH . H 4 HOH A 81 581 82 HOH HOH . H 4 HOH A 82 582 36 HOH HOH . H 4 HOH A 83 583 15 HOH HOH . H 4 HOH A 84 584 69 HOH HOH . H 4 HOH A 85 585 143 HOH HOH . H 4 HOH A 86 586 52 HOH HOH . H 4 HOH A 87 587 25 HOH HOH . H 4 HOH A 88 588 64 HOH HOH . H 4 HOH A 89 589 92 HOH HOH . H 4 HOH A 90 590 123 HOH HOH . H 4 HOH A 91 591 57 HOH HOH . H 4 HOH A 92 592 79 HOH HOH . H 4 HOH A 93 593 66 HOH HOH . H 4 HOH A 94 594 150 HOH HOH . H 4 HOH A 95 595 127 HOH HOH . H 4 HOH A 96 596 117 HOH HOH . H 4 HOH A 97 597 109 HOH HOH . H 4 HOH A 98 598 112 HOH HOH . H 4 HOH A 99 599 7 HOH HOH . H 4 HOH A 100 600 128 HOH HOH . H 4 HOH A 101 601 60 HOH HOH . H 4 HOH A 102 602 38 HOH HOH . H 4 HOH A 103 603 94 HOH HOH . H 4 HOH A 104 604 149 HOH HOH . H 4 HOH A 105 605 81 HOH HOH . H 4 HOH A 106 606 119 HOH HOH . H 4 HOH A 107 607 42 HOH HOH . H 4 HOH A 108 608 142 HOH HOH . H 4 HOH A 109 609 83 HOH HOH . H 4 HOH A 110 610 107 HOH HOH . H 4 HOH A 111 611 61 HOH HOH . H 4 HOH A 112 612 51 HOH HOH . H 4 HOH A 113 613 224 HOH HOH . H 4 HOH A 114 614 151 HOH HOH . H 4 HOH A 115 615 194 HOH HOH . H 4 HOH A 116 616 158 HOH HOH . H 4 HOH A 117 617 102 HOH HOH . H 4 HOH A 118 618 23 HOH HOH . H 4 HOH A 119 619 90 HOH HOH . H 4 HOH A 120 620 49 HOH HOH . H 4 HOH A 121 621 78 HOH HOH . H 4 HOH A 122 622 180 HOH HOH . H 4 HOH A 123 623 40 HOH HOH . H 4 HOH A 124 624 44 HOH HOH . H 4 HOH A 125 625 45 HOH HOH . H 4 HOH A 126 626 5 HOH HOH . H 4 HOH A 127 627 100 HOH HOH . H 4 HOH A 128 628 154 HOH HOH . H 4 HOH A 129 629 217 HOH HOH . H 4 HOH A 130 630 70 HOH HOH . H 4 HOH A 131 631 190 HOH HOH . H 4 HOH A 132 632 96 HOH HOH . H 4 HOH A 133 633 146 HOH HOH . H 4 HOH A 134 634 135 HOH HOH . H 4 HOH A 135 635 95 HOH HOH . H 4 HOH A 136 636 98 HOH HOH . H 4 HOH A 137 637 110 HOH HOH . H 4 HOH A 138 638 62 HOH HOH . H 4 HOH A 139 639 59 HOH HOH . H 4 HOH A 140 640 159 HOH HOH . H 4 HOH A 141 641 3 HOH HOH . H 4 HOH A 142 642 68 HOH HOH . H 4 HOH A 143 643 34 HOH HOH . H 4 HOH A 144 644 106 HOH HOH . H 4 HOH A 145 645 28 HOH HOH . H 4 HOH A 146 646 67 HOH HOH . H 4 HOH A 147 647 140 HOH HOH . H 4 HOH A 148 648 53 HOH HOH . H 4 HOH A 149 649 172 HOH HOH . H 4 HOH A 150 650 85 HOH HOH . H 4 HOH A 151 651 165 HOH HOH . H 4 HOH A 152 652 191 HOH HOH . H 4 HOH A 153 653 192 HOH HOH . H 4 HOH A 154 654 225 HOH HOH . H 4 HOH A 155 655 47 HOH HOH . H 4 HOH A 156 656 86 HOH HOH . H 4 HOH A 157 657 130 HOH HOH . H 4 HOH A 158 658 132 HOH HOH . H 4 HOH A 159 659 221 HOH HOH . H 4 HOH A 160 660 179 HOH HOH . H 4 HOH A 161 661 223 HOH HOH . H 4 HOH A 162 662 184 HOH HOH . H 4 HOH A 163 663 122 HOH HOH . H 4 HOH A 164 664 89 HOH HOH . H 4 HOH A 165 665 220 HOH HOH . H 4 HOH A 166 666 88 HOH HOH . H 4 HOH A 167 667 93 HOH HOH . H 4 HOH A 168 668 222 HOH HOH . H 4 HOH A 169 669 183 HOH HOH . H 4 HOH A 170 670 56 HOH HOH . H 4 HOH A 171 671 219 HOH HOH . H 4 HOH A 172 672 176 HOH HOH . H 4 HOH A 173 673 6 HOH HOH . H 4 HOH A 174 674 72 HOH HOH . H 4 HOH A 175 675 4 HOH HOH . H 4 HOH A 176 676 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 3 7.09 1.075 -17.813 1 23.74 ? C1 MPD 406 A 1 HETATM 2 C C2 MPD . . . G 3 7.028 2.317 -16.934 1 28.06 ? C2 MPD 406 A 1 HETATM 3 O O2 MPD . . . G 3 5.64 2.575 -16.564 1 34.63 ? O2 MPD 406 A 1 HETATM 4 C CM MPD . . . G 3 7.797 2.018 -15.653 1 30.12 ? CM MPD 406 A 1 HETATM 5 C C3 MPD . . . G 3 7.55 3.574 -17.645 1 23.57 ? C3 MPD 406 A 1 HETATM 6 C C4 MPD . . . G 3 8.989 3.496 -18.141 1 27.57 ? C4 MPD 406 A 1 HETATM 7 O O4 MPD . . . G 3 9.144 2.531 -19.157 1 29.78 ? O4 MPD 406 A 1 HETATM 8 C C5 MPD . . . G 3 9.403 4.839 -18.751 1 26.03 ? C5 MPD 406 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 8 #