data_7MED # _model_server_result.job_id 0E7zG7iNbrwZWJ2A5GEbng _model_server_result.datetime_utc '2024-10-25 20:29:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7med # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7MED # _exptl.entry_id 7MED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MED _cell.length_a 123.436 _cell.length_b 123.436 _cell.length_c 123.436 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MED _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 43 A SER 102 1_555 B CAN NXL . A NXL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale2 A C PHE 45 A PHE 104 1_555 A N KCX 46 A KCX 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C KCX 46 A KCX 105 1_555 A N ILE 47 A ILE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MED _atom_sites.fract_transf_matrix[1][1] 0.008101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 401 401 NXL NXL . C 3 CO2 A 1 402 1 CO2 CO2 . D 4 SO4 A 1 403 2 SO4 SO4 . E 4 SO4 A 1 404 4 SO4 SO4 . F 4 SO4 A 1 405 5 SO4 SO4 . G 4 SO4 A 1 406 6 SO4 SO4 . H 5 MPD A 1 407 1 MPD MPD . I 6 HOH A 1 501 96 HOH HOH . I 6 HOH A 2 502 141 HOH HOH . I 6 HOH A 3 503 155 HOH HOH . I 6 HOH A 4 504 148 HOH HOH . I 6 HOH A 5 505 101 HOH HOH . I 6 HOH A 6 506 78 HOH HOH . I 6 HOH A 7 507 99 HOH HOH . I 6 HOH A 8 508 149 HOH HOH . I 6 HOH A 9 509 48 HOH HOH . I 6 HOH A 10 510 113 HOH HOH . I 6 HOH A 11 511 24 HOH HOH . I 6 HOH A 12 512 98 HOH HOH . I 6 HOH A 13 513 41 HOH HOH . I 6 HOH A 14 514 17 HOH HOH . I 6 HOH A 15 515 43 HOH HOH . I 6 HOH A 16 516 33 HOH HOH . I 6 HOH A 17 517 8 HOH HOH . I 6 HOH A 18 518 144 HOH HOH . I 6 HOH A 19 519 80 HOH HOH . I 6 HOH A 20 520 16 HOH HOH . I 6 HOH A 21 521 111 HOH HOH . I 6 HOH A 22 522 54 HOH HOH . I 6 HOH A 23 523 126 HOH HOH . I 6 HOH A 24 524 154 HOH HOH . I 6 HOH A 25 525 129 HOH HOH . I 6 HOH A 26 526 139 HOH HOH . I 6 HOH A 27 527 85 HOH HOH . I 6 HOH A 28 528 29 HOH HOH . I 6 HOH A 29 529 65 HOH HOH . I 6 HOH A 30 530 50 HOH HOH . I 6 HOH A 31 531 39 HOH HOH . I 6 HOH A 32 532 58 HOH HOH . I 6 HOH A 33 533 112 HOH HOH . I 6 HOH A 34 534 42 HOH HOH . I 6 HOH A 35 535 64 HOH HOH . I 6 HOH A 36 536 158 HOH HOH . I 6 HOH A 37 537 31 HOH HOH . I 6 HOH A 38 538 145 HOH HOH . I 6 HOH A 39 539 153 HOH HOH . I 6 HOH A 40 540 81 HOH HOH . I 6 HOH A 41 541 10 HOH HOH . I 6 HOH A 42 542 108 HOH HOH . I 6 HOH A 43 543 91 HOH HOH . I 6 HOH A 44 544 104 HOH HOH . I 6 HOH A 45 545 92 HOH HOH . I 6 HOH A 46 546 13 HOH HOH . I 6 HOH A 47 547 131 HOH HOH . I 6 HOH A 48 548 137 HOH HOH . I 6 HOH A 49 549 46 HOH HOH . I 6 HOH A 50 550 103 HOH HOH . I 6 HOH A 51 551 52 HOH HOH . I 6 HOH A 52 552 150 HOH HOH . I 6 HOH A 53 553 19 HOH HOH . I 6 HOH A 54 554 35 HOH HOH . I 6 HOH A 55 555 32 HOH HOH . I 6 HOH A 56 556 116 HOH HOH . I 6 HOH A 57 557 22 HOH HOH . I 6 HOH A 58 558 37 HOH HOH . I 6 HOH A 59 559 15 HOH HOH . I 6 HOH A 60 560 82 HOH HOH . I 6 HOH A 61 561 55 HOH HOH . I 6 HOH A 62 562 21 HOH HOH . I 6 HOH A 63 563 107 HOH HOH . I 6 HOH A 64 564 124 HOH HOH . I 6 HOH A 65 565 18 HOH HOH . I 6 HOH A 66 566 63 HOH HOH . I 6 HOH A 67 567 120 HOH HOH . I 6 HOH A 68 568 12 HOH HOH . I 6 HOH A 69 569 136 HOH HOH . I 6 HOH A 70 570 118 HOH HOH . I 6 HOH A 71 571 122 HOH HOH . I 6 HOH A 72 572 72 HOH HOH . I 6 HOH A 73 573 14 HOH HOH . I 6 HOH A 74 574 147 HOH HOH . I 6 HOH A 75 575 57 HOH HOH . I 6 HOH A 76 576 115 HOH HOH . I 6 HOH A 77 577 26 HOH HOH . I 6 HOH A 78 578 114 HOH HOH . I 6 HOH A 79 579 95 HOH HOH . I 6 HOH A 80 580 30 HOH HOH . I 6 HOH A 81 581 159 HOH HOH . I 6 HOH A 82 582 25 HOH HOH . I 6 HOH A 83 583 146 HOH HOH . I 6 HOH A 84 584 66 HOH HOH . I 6 HOH A 85 585 27 HOH HOH . I 6 HOH A 86 586 119 HOH HOH . I 6 HOH A 87 587 36 HOH HOH . I 6 HOH A 88 588 45 HOH HOH . I 6 HOH A 89 589 60 HOH HOH . I 6 HOH A 90 590 106 HOH HOH . I 6 HOH A 91 591 73 HOH HOH . I 6 HOH A 92 592 5 HOH HOH . I 6 HOH A 93 593 135 HOH HOH . I 6 HOH A 94 594 117 HOH HOH . I 6 HOH A 95 595 90 HOH HOH . I 6 HOH A 96 596 143 HOH HOH . I 6 HOH A 97 597 9 HOH HOH . I 6 HOH A 98 598 38 HOH HOH . I 6 HOH A 99 599 94 HOH HOH . I 6 HOH A 100 600 140 HOH HOH . I 6 HOH A 101 601 11 HOH HOH . I 6 HOH A 102 602 51 HOH HOH . I 6 HOH A 103 603 2 HOH HOH . I 6 HOH A 104 604 134 HOH HOH . I 6 HOH A 105 605 102 HOH HOH . I 6 HOH A 106 606 105 HOH HOH . I 6 HOH A 107 607 123 HOH HOH . I 6 HOH A 108 608 100 HOH HOH . I 6 HOH A 109 609 40 HOH HOH . I 6 HOH A 110 610 97 HOH HOH . I 6 HOH A 111 611 67 HOH HOH . I 6 HOH A 112 612 44 HOH HOH . I 6 HOH A 113 613 34 HOH HOH . I 6 HOH A 114 614 142 HOH HOH . I 6 HOH A 115 615 28 HOH HOH . I 6 HOH A 116 616 74 HOH HOH . I 6 HOH A 117 617 23 HOH HOH . I 6 HOH A 118 618 59 HOH HOH . I 6 HOH A 119 619 110 HOH HOH . I 6 HOH A 120 620 130 HOH HOH . I 6 HOH A 121 621 138 HOH HOH . I 6 HOH A 122 622 83 HOH HOH . I 6 HOH A 123 623 70 HOH HOH . I 6 HOH A 124 624 88 HOH HOH . I 6 HOH A 125 625 3 HOH HOH . I 6 HOH A 126 626 7 HOH HOH . I 6 HOH A 127 627 61 HOH HOH . I 6 HOH A 128 628 75 HOH HOH . I 6 HOH A 129 629 47 HOH HOH . I 6 HOH A 130 630 53 HOH HOH . I 6 HOH A 131 631 62 HOH HOH . I 6 HOH A 132 632 84 HOH HOH . I 6 HOH A 133 633 132 HOH HOH . I 6 HOH A 134 634 157 HOH HOH . I 6 HOH A 135 635 109 HOH HOH . I 6 HOH A 136 636 79 HOH HOH . I 6 HOH A 137 637 87 HOH HOH . I 6 HOH A 138 638 77 HOH HOH . I 6 HOH A 139 639 86 HOH HOH . I 6 HOH A 140 640 71 HOH HOH . I 6 HOH A 141 641 56 HOH HOH . I 6 HOH A 142 642 93 HOH HOH . I 6 HOH A 143 643 76 HOH HOH . I 6 HOH A 144 644 133 HOH HOH . I 6 HOH A 145 645 127 HOH HOH . I 6 HOH A 146 646 6 HOH HOH . I 6 HOH A 147 647 89 HOH HOH . I 6 HOH A 148 648 4 HOH HOH . I 6 HOH A 149 649 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 5 7.007 1.174 -17.855 1 27.85 ? C1 MPD 407 A 1 HETATM 2 C C2 MPD . . . H 5 6.949 2.389 -16.949 1 33.06 ? C2 MPD 407 A 1 HETATM 3 O O2 MPD . . . H 5 5.566 2.584 -16.549 1 42.27 ? O2 MPD 407 A 1 HETATM 4 C CM MPD . . . H 5 7.778 2.094 -15.707 1 34.78 ? CM MPD 407 A 1 HETATM 5 C C3 MPD . . . H 5 7.434 3.662 -17.642 1 26.1 ? C3 MPD 407 A 1 HETATM 6 C C4 MPD . . . H 5 8.891 3.646 -18.087 1 27.79 ? C4 MPD 407 A 1 HETATM 7 O O4 MPD . . . H 5 9.139 2.662 -19.066 1 39.77 ? O4 MPD 407 A 1 HETATM 8 C C5 MPD . . . H 5 9.239 4.995 -18.719 1 27.6 ? C5 MPD 407 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #