data_7MEF # _model_server_result.job_id 9zMGo7ZZvi3EhdAMhRJyyA _model_server_result.datetime_utc '2024-11-16 07:03:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7MEF # _exptl.entry_id 7MEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MEF _cell.length_a 123.803 _cell.length_b 123.803 _cell.length_c 123.803 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 102 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.416 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 239 n n C1 H11 MPD sing 240 n n C1 H12 MPD sing 241 n n C1 H13 MPD sing 242 n n C2 O2 MPD sing 243 n n C2 CM MPD sing 244 n n C2 C3 MPD sing 245 n n O2 HO2 MPD sing 246 n n CM HM1 MPD sing 247 n n CM HM2 MPD sing 248 n n CM HM3 MPD sing 249 n n C3 C4 MPD sing 250 n n C3 H31 MPD sing 251 n n C3 H32 MPD sing 252 n n C4 O4 MPD sing 253 n n C4 C5 MPD sing 254 n n C4 H4 MPD sing 255 n n O4 HO4 MPD sing 256 n n C5 H51 MPD sing 257 n n C5 H52 MPD sing 258 n n C5 H53 MPD sing 259 n n # _atom_sites.entry_id 7MEF _atom_sites.fract_transf_matrix[1][1] 0.008077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 401 358 NXL NXL . C 3 CO2 A 1 402 1 CO2 CO2 . D 4 SO4 A 1 403 2 SO4 SO4 . E 4 SO4 A 1 404 4 SO4 SO4 . F 4 SO4 A 1 405 5 SO4 SO4 . G 4 SO4 A 1 406 6 SO4 SO4 . H 5 MPD A 1 407 1 MPD MPD . I 6 HOH A 1 501 184 HOH HOH . I 6 HOH A 2 502 156 HOH HOH . I 6 HOH A 3 503 96 HOH HOH . I 6 HOH A 4 504 141 HOH HOH . I 6 HOH A 5 505 111 HOH HOH . I 6 HOH A 6 506 48 HOH HOH . I 6 HOH A 7 507 155 HOH HOH . I 6 HOH A 8 508 170 HOH HOH . I 6 HOH A 9 509 78 HOH HOH . I 6 HOH A 10 510 144 HOH HOH . I 6 HOH A 11 511 161 HOH HOH . I 6 HOH A 12 512 29 HOH HOH . I 6 HOH A 13 513 149 HOH HOH . I 6 HOH A 14 514 101 HOH HOH . I 6 HOH A 15 515 171 HOH HOH . I 6 HOH A 16 516 137 HOH HOH . I 6 HOH A 17 517 13 HOH HOH . I 6 HOH A 18 518 24 HOH HOH . I 6 HOH A 19 519 129 HOH HOH . I 6 HOH A 20 520 167 HOH HOH . I 6 HOH A 21 521 41 HOH HOH . I 6 HOH A 22 522 85 HOH HOH . I 6 HOH A 23 523 80 HOH HOH . I 6 HOH A 24 524 8 HOH HOH . I 6 HOH A 25 525 124 HOH HOH . I 6 HOH A 26 526 17 HOH HOH . I 6 HOH A 27 527 58 HOH HOH . I 6 HOH A 28 528 147 HOH HOH . I 6 HOH A 29 529 65 HOH HOH . I 6 HOH A 30 530 43 HOH HOH . I 6 HOH A 31 531 39 HOH HOH . I 6 HOH A 32 532 98 HOH HOH . I 6 HOH A 33 533 159 HOH HOH . I 6 HOH A 34 534 139 HOH HOH . I 6 HOH A 35 535 113 HOH HOH . I 6 HOH A 36 536 54 HOH HOH . I 6 HOH A 37 537 160 HOH HOH . I 6 HOH A 38 538 31 HOH HOH . I 6 HOH A 39 539 91 HOH HOH . I 6 HOH A 40 540 50 HOH HOH . I 6 HOH A 41 541 32 HOH HOH . I 6 HOH A 42 542 16 HOH HOH . I 6 HOH A 43 543 19 HOH HOH . I 6 HOH A 44 544 55 HOH HOH . I 6 HOH A 45 545 72 HOH HOH . I 6 HOH A 46 546 136 HOH HOH . I 6 HOH A 47 547 33 HOH HOH . I 6 HOH A 48 548 103 HOH HOH . I 6 HOH A 49 549 12 HOH HOH . I 6 HOH A 50 550 46 HOH HOH . I 6 HOH A 51 551 35 HOH HOH . I 6 HOH A 52 552 9 HOH HOH . I 6 HOH A 53 553 22 HOH HOH . I 6 HOH A 54 554 115 HOH HOH . I 6 HOH A 55 555 104 HOH HOH . I 6 HOH A 56 556 120 HOH HOH . I 6 HOH A 57 557 143 HOH HOH . I 6 HOH A 58 558 10 HOH HOH . I 6 HOH A 59 559 14 HOH HOH . I 6 HOH A 60 560 82 HOH HOH . I 6 HOH A 61 561 118 HOH HOH . I 6 HOH A 62 562 26 HOH HOH . I 6 HOH A 63 563 122 HOH HOH . I 6 HOH A 64 564 117 HOH HOH . I 6 HOH A 65 565 166 HOH HOH . I 6 HOH A 66 566 15 HOH HOH . I 6 HOH A 67 567 119 HOH HOH . I 6 HOH A 68 568 30 HOH HOH . I 6 HOH A 69 569 11 HOH HOH . I 6 HOH A 70 570 36 HOH HOH . I 6 HOH A 71 571 107 HOH HOH . I 6 HOH A 72 572 168 HOH HOH . I 6 HOH A 73 573 114 HOH HOH . I 6 HOH A 74 574 45 HOH HOH . I 6 HOH A 75 575 21 HOH HOH . I 6 HOH A 76 576 92 HOH HOH . I 6 HOH A 77 577 18 HOH HOH . I 6 HOH A 78 578 20 HOH HOH . I 6 HOH A 79 579 140 HOH HOH . I 6 HOH A 80 580 169 HOH HOH . I 6 HOH A 81 581 176 HOH HOH . I 6 HOH A 82 582 52 HOH HOH . I 6 HOH A 83 583 146 HOH HOH . I 6 HOH A 84 584 81 HOH HOH . I 6 HOH A 85 585 102 HOH HOH . I 6 HOH A 86 586 60 HOH HOH . I 6 HOH A 87 587 69 HOH HOH . I 6 HOH A 88 588 63 HOH HOH . I 6 HOH A 89 589 27 HOH HOH . I 6 HOH A 90 590 95 HOH HOH . I 6 HOH A 91 591 5 HOH HOH . I 6 HOH A 92 592 4 HOH HOH . I 6 HOH A 93 593 25 HOH HOH . I 6 HOH A 94 594 66 HOH HOH . I 6 HOH A 95 595 51 HOH HOH . I 6 HOH A 96 596 94 HOH HOH . I 6 HOH A 97 597 34 HOH HOH . I 6 HOH A 98 598 40 HOH HOH . I 6 HOH A 99 599 174 HOH HOH . I 6 HOH A 100 600 47 HOH HOH . I 6 HOH A 101 601 172 HOH HOH . I 6 HOH A 102 602 42 HOH HOH . I 6 HOH A 103 603 73 HOH HOH . I 6 HOH A 104 604 100 HOH HOH . I 6 HOH A 105 605 90 HOH HOH . I 6 HOH A 106 606 110 HOH HOH . I 6 HOH A 107 607 99 HOH HOH . I 6 HOH A 108 608 135 HOH HOH . I 6 HOH A 109 609 151 HOH HOH . I 6 HOH A 110 610 68 HOH HOH . I 6 HOH A 111 611 106 HOH HOH . I 6 HOH A 112 612 126 HOH HOH . I 6 HOH A 113 613 57 HOH HOH . I 6 HOH A 114 614 142 HOH HOH . I 6 HOH A 115 615 165 HOH HOH . I 6 HOH A 116 616 123 HOH HOH . I 6 HOH A 117 617 153 HOH HOH . I 6 HOH A 118 618 44 HOH HOH . I 6 HOH A 119 619 62 HOH HOH . I 6 HOH A 120 620 38 HOH HOH . I 6 HOH A 121 621 28 HOH HOH . I 6 HOH A 122 622 97 HOH HOH . I 6 HOH A 123 623 67 HOH HOH . I 6 HOH A 124 624 132 HOH HOH . I 6 HOH A 125 625 61 HOH HOH . I 6 HOH A 126 626 70 HOH HOH . I 6 HOH A 127 627 23 HOH HOH . I 6 HOH A 128 628 3 HOH HOH . I 6 HOH A 129 629 105 HOH HOH . I 6 HOH A 130 630 7 HOH HOH . I 6 HOH A 131 631 175 HOH HOH . I 6 HOH A 132 632 134 HOH HOH . I 6 HOH A 133 633 138 HOH HOH . I 6 HOH A 134 634 84 HOH HOH . I 6 HOH A 135 635 177 HOH HOH . I 6 HOH A 136 636 152 HOH HOH . I 6 HOH A 137 637 154 HOH HOH . I 6 HOH A 138 638 130 HOH HOH . I 6 HOH A 139 639 108 HOH HOH . I 6 HOH A 140 640 128 HOH HOH . I 6 HOH A 141 641 182 HOH HOH . I 6 HOH A 142 642 53 HOH HOH . I 6 HOH A 143 643 75 HOH HOH . I 6 HOH A 144 644 86 HOH HOH . I 6 HOH A 145 645 59 HOH HOH . I 6 HOH A 146 646 87 HOH HOH . I 6 HOH A 147 647 133 HOH HOH . I 6 HOH A 148 648 93 HOH HOH . I 6 HOH A 149 649 76 HOH HOH . I 6 HOH A 150 650 56 HOH HOH . I 6 HOH A 151 651 164 HOH HOH . I 6 HOH A 152 652 148 HOH HOH . I 6 HOH A 153 653 127 HOH HOH . I 6 HOH A 154 654 6 HOH HOH . I 6 HOH A 155 655 89 HOH HOH . I 6 HOH A 156 656 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 5 7.128 1.16 -17.859 1 34.6 ? C1 MPD 407 A 1 HETATM 2 C C2 MPD . . . H 5 7.001 2.426 -17.018 1 44.12 ? C2 MPD 407 A 1 HETATM 3 O O2 MPD . . . H 5 5.602 2.606 -16.677 1 48.81 ? O2 MPD 407 A 1 HETATM 4 C CM MPD . . . H 5 7.758 2.249 -15.712 1 46.92 ? CM MPD 407 A 1 HETATM 5 C C3 MPD . . . H 5 7.479 3.673 -17.767 1 32.65 ? C3 MPD 407 A 1 HETATM 6 C C4 MPD . . . H 5 8.976 3.738 -18.037 1 35.86 ? C4 MPD 407 A 1 HETATM 7 O O4 MPD . . . H 5 9.417 2.645 -18.809 1 51.64 ? O4 MPD 407 A 1 HETATM 8 C C5 MPD . . . H 5 9.326 5.018 -18.8 1 35.56 ? C5 MPD 407 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #