data_7MEM # _model_server_result.job_id Zl4SwPODSSqCfDNJ2ZSxeA _model_server_result.datetime_utc '2024-10-20 03:55:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":402}' # _entry.id 7MEM # _exptl.entry_id 7MEM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N ? 7 W N N ? 7 X N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n M NAG 1 M 1 NAG E 339 NAG 5 n M FUC 2 M 2 FUC E 340 FUC 6 n N NAG 1 N 1 NAG E 341 NAG 6 n N NAG 2 N 2 NAG E 342 NAG 5 n O NAG 1 O 1 NAG C 339 NAG 5 n O FUC 2 O 2 FUC C 340 FUC 6 n P NAG 1 P 1 NAG C 341 NAG 6 n P NAG 2 P 2 NAG C 342 NAG 5 n Q NAG 1 Q 1 NAG F 339 NAG 5 n Q FUC 2 Q 2 FUC F 340 FUC 6 n R NAG 1 R 1 NAG F 341 NAG 6 n R NAG 2 R 2 NAG F 342 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 E CYS 14 1_555 H SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 46 E CYS 52 1_555 A SG CYS 279 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 59 E CYS 64 1_555 A SG CYS 71 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 94 E CYS 97 1_555 A SG CYS 140 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 283 E CYS 281 1_555 A SG CYS 307 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 C SG CYS 21 H CYS 22 1_555 C SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 D SG CYS 137 D CYS 137 1_555 I SG CYS 8 F CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf9 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 E SG CYS 8 C CYS 14 1_555 L SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf11 E SG CYS 46 C CYS 52 1_555 E SG CYS 279 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf12 E SG CYS 59 C CYS 64 1_555 E SG CYS 71 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf13 E SG CYS 94 C CYS 97 1_555 E SG CYS 140 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf14 E SG CYS 283 C CYS 281 1_555 E SG CYS 307 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 F SG CYS 23 J CYS 23 1_555 F SG CYS 88 J CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf16 G SG CYS 21 G CYS 22 1_555 G SG CYS 95 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 H SG CYS 144 A CYS 144 1_555 H SG CYS 148 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf18 I SG CYS 46 F CYS 52 1_555 I SG CYS 279 F CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf19 I SG CYS 59 F CYS 64 1_555 I SG CYS 71 F CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf20 I SG CYS 94 F CYS 97 1_555 I SG CYS 140 F CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf21 I SG CYS 283 F CYS 281 1_555 I SG CYS 307 F CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf22 J SG CYS 23 K CYS 23 1_555 J SG CYS 88 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf23 K SG CYS 21 I CYS 22 1_555 K SG CYS 95 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf24 L SG CYS 144 B CYS 144 1_555 L SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 27 E ASN 33 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale2 A ND2 ASN 91 E ASN 94 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale3 A ND2 ASN 280 E ASN 278 1_555 S C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale4 A ND2 ASN 291 E ASN 289 1_555 T C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale5 E ND2 ASN 27 C ASN 33 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale6 E ND2 ASN 91 C ASN 94 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale7 E ND2 ASN 280 C ASN 278 1_555 U C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale8 E ND2 ASN 291 C ASN 289 1_555 V C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale9 I ND2 ASN 27 F ASN 33 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale10 I ND2 ASN 91 F ASN 94 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale11 I ND2 ASN 280 F ASN 278 1_555 W C1 NAG . F NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale12 I ND2 ASN 291 F ASN 289 1_555 X C1 NAG . F NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale13 M O6 NAG . M NAG 1 1_555 M C1 FUC . M FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale14 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale15 O O6 NAG . O NAG 1 1_555 O C1 FUC . O FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale16 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale17 Q O6 NAG . Q NAG 1 1_555 Q C1 FUC . Q FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale18 R O4 NAG . R NAG 1 1_555 R C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MEM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 7 NAG E 1 401 343 NAG NAG . T 7 NAG E 1 402 344 NAG NAG . U 7 NAG C 1 401 343 NAG NAG . V 7 NAG C 1 402 344 NAG NAG . W 7 NAG F 1 401 343 NAG NAG . X 7 NAG F 1 402 344 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 7 153.02 137.823 161.942 1 114.96 ? C1 NAG 402 C 1 HETATM 2 C C2 NAG . . . V 7 152.915 138.344 163.449 1 110.88 ? C2 NAG 402 C 1 HETATM 3 C C3 NAG . . . V 7 151.761 137.559 164.166 1 123.25 ? C3 NAG 402 C 1 HETATM 4 C C4 NAG . . . V 7 150.415 137.777 163.392 1 135.43 ? C4 NAG 402 C 1 HETATM 5 C C5 NAG . . . V 7 150.587 137.293 161.903 1 135.63 ? C5 NAG 402 C 1 HETATM 6 C C6 NAG . . . V 7 149.349 137.536 161.032 1 138.42 ? C6 NAG 402 C 1 HETATM 7 C C7 NAG . . . V 7 154.959 139.035 164.704 1 117.12 ? C7 NAG 402 C 1 HETATM 8 C C8 NAG . . . V 7 156.262 138.646 165.337 1 112.13 ? C8 NAG 402 C 1 HETATM 9 N N2 NAG . . . V 7 154.211 138.083 164.127 1 112.79 ? N2 NAG 402 C 1 HETATM 10 O O3 NAG . . . V 7 151.623 138.036 165.519 1 126.81 ? O3 NAG 402 C 1 HETATM 11 O O4 NAG . . . V 7 149.381 137.023 164.032 1 135.81 ? O4 NAG 402 C 1 HETATM 12 O O5 NAG . . . V 7 151.725 138.033 161.274 1 121.59 ? O5 NAG 402 C 1 HETATM 13 O O6 NAG . . . V 7 149.358 136.716 159.866 1 132.36 ? O6 NAG 402 C 1 HETATM 14 O O7 NAG . . . V 7 154.61 140.227 164.732 1 106.4 ? O7 NAG 402 C 1 HETATM 15 H H1 NAG . . . V 7 153.246 136.715 161.941 1 137.95 ? H1 NAG 402 C 1 HETATM 16 H H2 NAG . . . V 7 152.673 139.424 163.42 1 133.06 ? H2 NAG 402 C 1 HETATM 17 H H3 NAG . . . V 7 152.014 136.483 164.208 1 147.9 ? H3 NAG 402 C 1 HETATM 18 H H4 NAG . . . V 7 150.15 138.848 163.424 1 162.51 ? H4 NAG 402 C 1 HETATM 19 H H5 NAG . . . V 7 150.797 136.206 161.899 1 162.75 ? H5 NAG 402 C 1 HETATM 20 H H61 NAG . . . V 7 149.33 138.593 160.721 1 166.1 ? H61 NAG 402 C 1 HETATM 21 H H62 NAG . . . V 7 148.434 137.304 161.601 1 166.1 ? H62 NAG 402 C 1 HETATM 22 H H81 NAG . . . V 7 156.951 138.279 164.56 1 134.55 ? H81 NAG 402 C 1 HETATM 23 H H82 NAG . . . V 7 156.105 137.82 166.046 1 134.55 ? H82 NAG 402 C 1 HETATM 24 H H83 NAG . . . V 7 156.678 139.496 165.897 1 134.55 ? H83 NAG 402 C 1 HETATM 25 H HN2 NAG . . . V 7 154.547 137.15 164.144 1 135.35 ? HN2 NAG 402 C 1 HETATM 26 H HO3 NAG . . . V 7 152.497 138.321 165.866 1 152.17 ? HO3 NAG 402 C 1 HETATM 27 H HO4 NAG . . . V 7 149.431 137.157 165.004 1 162.97 ? HO4 NAG 402 C 1 HETATM 28 H HO6 NAG . . . V 7 150.06 137.023 159.249 1 158.83 ? HO6 NAG 402 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #