data_7MEQ # _model_server_result.job_id uBTvRV6NsWbuavq9VHVtPQ _model_server_result.datetime_utc '2024-10-18 06:16:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7meq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7MEQ # _exptl.entry_id 7MEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.176 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-carbamimidamidobenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.53 _cell.angle_gamma 90 _cell.entry_id 7MEQ _cell.length_a 59.445 _cell.length_b 51.425 _cell.length_c 64.353 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 801 NAG 2 n B NAG 2 B 2 NAG A 901 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 172 1_555 A SG CYS 123 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 77 A CYS 185 1_555 A SG CYS 133 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 136 A CYS 244 1_555 A SG CYS 256 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 172 A CYS 281 1_555 A SG CYS 188 A CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 301 A CYS 410 1_555 A SG CYS 317 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 328 A CYS 437 1_555 A SG CYS 356 A CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 105 A ASN 213 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A OG SER 332 A SER 441 1_555 C C6 GBS . A GBS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C8 H9 N3 O2' _chem_comp.formula_weight 179.176 _chem_comp.id GBS _chem_comp.mon_nstd_flag . _chem_comp.name '4-carbamimidamidobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nafamostat, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 O GBS doub 83 n n C6 C5 GBS sing 84 n n C5 C GBS doub 85 n y C5 C4 GBS sing 86 n y C C1 GBS sing 87 n y C4 C3 GBS doub 88 n y C1 C2 GBS doub 89 n y C3 C2 GBS sing 90 n y C2 N2 GBS sing 91 n n N2 C18 GBS sing 92 n n C18 N4 GBS doub 93 n n C18 N3 GBS sing 94 n n C6 O1 GBS sing 95 n n C3 H1 GBS sing 96 n n C4 H2 GBS sing 97 n n C1 H3 GBS sing 98 n n N4 H4 GBS sing 99 n n N2 H5 GBS sing 100 n n N3 H6 GBS sing 101 n n N3 H7 GBS sing 102 n n C H8 GBS sing 103 n n O1 H9 GBS sing 104 n n # _atom_sites.entry_id 7MEQ _atom_sites.fract_transf_matrix[1][1] 0.016822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000449 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GBS A 1 601 501 GBS NEF . D 4 UNX A 1 602 601 UNX UNX . E 4 UNX A 1 603 2 UNX UNX . F 4 UNX A 1 604 3 UNX UNX . G 5 HOH A 1 701 119 HOH HOH . G 5 HOH A 2 702 39 HOH HOH . G 5 HOH A 3 703 19 HOH HOH . G 5 HOH A 4 704 94 HOH HOH . G 5 HOH A 5 705 1 HOH HOH . G 5 HOH A 6 706 79 HOH HOH . G 5 HOH A 7 707 50 HOH HOH . G 5 HOH A 8 708 111 HOH HOH . G 5 HOH A 9 709 97 HOH HOH . G 5 HOH A 10 710 46 HOH HOH . G 5 HOH A 11 711 76 HOH HOH . G 5 HOH A 12 712 124 HOH HOH . G 5 HOH A 13 713 40 HOH HOH . G 5 HOH A 14 714 104 HOH HOH . G 5 HOH A 15 715 107 HOH HOH . G 5 HOH A 16 716 75 HOH HOH . G 5 HOH A 17 717 84 HOH HOH . G 5 HOH A 18 718 121 HOH HOH . G 5 HOH A 19 719 92 HOH HOH . G 5 HOH A 20 720 70 HOH HOH . G 5 HOH A 21 721 30 HOH HOH . G 5 HOH A 22 722 18 HOH HOH . G 5 HOH A 23 723 48 HOH HOH . G 5 HOH A 24 724 95 HOH HOH . G 5 HOH A 25 725 27 HOH HOH . G 5 HOH A 26 726 98 HOH HOH . G 5 HOH A 27 727 41 HOH HOH . G 5 HOH A 28 728 140 HOH HOH . G 5 HOH A 29 729 60 HOH HOH . G 5 HOH A 30 730 35 HOH HOH . G 5 HOH A 31 731 16 HOH HOH . G 5 HOH A 32 732 131 HOH HOH . G 5 HOH A 33 733 126 HOH HOH . G 5 HOH A 34 734 53 HOH HOH . G 5 HOH A 35 735 38 HOH HOH . G 5 HOH A 36 736 21 HOH HOH . G 5 HOH A 37 737 64 HOH HOH . G 5 HOH A 38 738 13 HOH HOH . G 5 HOH A 39 739 136 HOH HOH . G 5 HOH A 40 740 11 HOH HOH . G 5 HOH A 41 741 12 HOH HOH . G 5 HOH A 42 742 82 HOH HOH . G 5 HOH A 43 743 85 HOH HOH . G 5 HOH A 44 744 88 HOH HOH . G 5 HOH A 45 745 45 HOH HOH . G 5 HOH A 46 746 51 HOH HOH . G 5 HOH A 47 747 109 HOH HOH . G 5 HOH A 48 748 100 HOH HOH . G 5 HOH A 49 749 132 HOH HOH . G 5 HOH A 50 750 3 HOH HOH . G 5 HOH A 51 751 37 HOH HOH . G 5 HOH A 52 752 93 HOH HOH . G 5 HOH A 53 753 138 HOH HOH . G 5 HOH A 54 754 34 HOH HOH . G 5 HOH A 55 755 127 HOH HOH . G 5 HOH A 56 756 54 HOH HOH . G 5 HOH A 57 757 116 HOH HOH . G 5 HOH A 58 758 10 HOH HOH . G 5 HOH A 59 759 118 HOH HOH . G 5 HOH A 60 760 89 HOH HOH . G 5 HOH A 61 761 58 HOH HOH . G 5 HOH A 62 762 90 HOH HOH . G 5 HOH A 63 763 5 HOH HOH . G 5 HOH A 64 764 28 HOH HOH . G 5 HOH A 65 765 71 HOH HOH . G 5 HOH A 66 766 47 HOH HOH . G 5 HOH A 67 767 15 HOH HOH . G 5 HOH A 68 768 43 HOH HOH . G 5 HOH A 69 769 49 HOH HOH . G 5 HOH A 70 770 106 HOH HOH . G 5 HOH A 71 771 57 HOH HOH . G 5 HOH A 72 772 17 HOH HOH . G 5 HOH A 73 773 110 HOH HOH . G 5 HOH A 74 774 103 HOH HOH . G 5 HOH A 75 775 72 HOH HOH . G 5 HOH A 76 776 108 HOH HOH . G 5 HOH A 77 777 7 HOH HOH . G 5 HOH A 78 778 105 HOH HOH . G 5 HOH A 79 779 113 HOH HOH . G 5 HOH A 80 780 9 HOH HOH . G 5 HOH A 81 781 73 HOH HOH . G 5 HOH A 82 782 8 HOH HOH . G 5 HOH A 83 783 32 HOH HOH . G 5 HOH A 84 784 114 HOH HOH . G 5 HOH A 85 785 83 HOH HOH . G 5 HOH A 86 786 115 HOH HOH . G 5 HOH A 87 787 24 HOH HOH . G 5 HOH A 88 788 96 HOH HOH . G 5 HOH A 89 789 42 HOH HOH . G 5 HOH A 90 790 29 HOH HOH . G 5 HOH A 91 791 122 HOH HOH . G 5 HOH A 92 792 6 HOH HOH . G 5 HOH A 93 793 112 HOH HOH . G 5 HOH A 94 794 130 HOH HOH . G 5 HOH A 95 795 33 HOH HOH . G 5 HOH A 96 796 59 HOH HOH . G 5 HOH A 97 797 134 HOH HOH . G 5 HOH A 98 798 91 HOH HOH . G 5 HOH A 99 799 125 HOH HOH . G 5 HOH A 100 800 137 HOH HOH . G 5 HOH A 101 801 86 HOH HOH . G 5 HOH A 102 802 63 HOH HOH . G 5 HOH A 103 803 23 HOH HOH . G 5 HOH A 104 804 129 HOH HOH . G 5 HOH A 105 805 77 HOH HOH . G 5 HOH A 106 806 44 HOH HOH . G 5 HOH A 107 807 133 HOH HOH . G 5 HOH A 108 808 4 HOH HOH . G 5 HOH A 109 809 36 HOH HOH . G 5 HOH A 110 810 101 HOH HOH . G 5 HOH A 111 811 68 HOH HOH . G 5 HOH A 112 812 81 HOH HOH . G 5 HOH A 113 813 141 HOH HOH . G 5 HOH A 114 814 135 HOH HOH . G 5 HOH A 115 815 62 HOH HOH . G 5 HOH A 116 816 61 HOH HOH . G 5 HOH A 117 817 56 HOH HOH . G 5 HOH A 118 818 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GBS . . . C 3 -9.771 -6.594 20.191 1 48.57 ? C2 GBS 601 A 1 HETATM 2 C C3 GBS . . . C 3 -10.383 -5.387 19.865 1 49.9 ? C3 GBS 601 A 1 HETATM 3 C C4 GBS . . . C 3 -9.821 -4.55 18.918 1 51.9 ? C4 GBS 601 A 1 HETATM 4 C C6 GBS . . . C 3 -7.987 -3.93 17.343 1 55.22 ? C6 GBS 601 A 1 HETATM 5 C C1 GBS . . . C 3 -8.586 -6.949 19.545 1 50.17 ? C1 GBS 601 A 1 HETATM 6 N N4 GBS . . . C 3 -8.498 -8.407 22.128 1 44.27 ? N4 GBS 601 A 1 HETATM 7 C C5 GBS . . . C 3 -8.628 -4.893 18.279 1 53.03 ? C5 GBS 601 A 1 HETATM 8 C C18 GBS . . . C 3 -9.817 -8.294 21.949 1 44.54 ? C18 GBS 601 A 1 HETATM 9 O O GBS . . . C 3 -7.986 -2.731 17.507 1 56.58 ? O GBS 601 A 1 HETATM 10 N N2 GBS . . . C 3 -10.432 -7.436 21.122 1 46.68 ? N2 GBS 601 A 1 HETATM 11 N N3 GBS . . . C 3 -10.614 -9.109 22.642 1 42.03 ? N3 GBS 601 A 1 HETATM 12 C C GBS . . . C 3 -8.026 -6.11 18.596 1 50.85 ? C GBS 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #