data_7MF1 # _model_server_result.job_id Rw7YugruyMi12BdBQ6CjJA _model_server_result.datetime_utc '2024-11-21 09:15:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mf1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7MF1 # _exptl.entry_id 7MF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MF1 _cell.length_a 75.711 _cell.length_b 81.213 _cell.length_c 112.461 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG L 212 NAG 4 n D NAG 2 B 2 NAG L 213 NAG 4 n D FUC 3 B 3 FUC L 214 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 336 1_555 A SG CYS 29 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 47 A CYS 379 1_555 A SG CYS 100 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 59 A CYS 391 1_555 A SG CYS 193 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 148 A CYS 480 1_555 A SG CYS 156 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 230 H CYS 218 1_555 C SG CYS 215 L CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 C SG CYS 22 L CYS 23 1_555 C SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 138 L CYS 134 1_555 C SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 11 A ASN 343 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 C ND2 ASN 95 L ASN 93 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale4 D O6 NAG . B NAG 1 1_555 D C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 260 n n C1 O1 NAG sing 261 n n C1 O5 NAG sing 262 n n C1 H1 NAG sing 263 n n C2 C3 NAG sing 264 n n C2 N2 NAG sing 265 n n C2 H2 NAG sing 266 n n C3 C4 NAG sing 267 n n C3 O3 NAG sing 268 n n C3 H3 NAG sing 269 n n C4 C5 NAG sing 270 n n C4 O4 NAG sing 271 n n C4 H4 NAG sing 272 n n C5 C6 NAG sing 273 n n C5 O5 NAG sing 274 n n C5 H5 NAG sing 275 n n C6 O6 NAG sing 276 n n C6 H61 NAG sing 277 n n C6 H62 NAG sing 278 n n C7 C8 NAG sing 279 n n C7 N2 NAG sing 280 n n C7 O7 NAG doub 281 n n C8 H81 NAG sing 282 n n C8 H82 NAG sing 283 n n C8 H83 NAG sing 284 n n N2 HN2 NAG sing 285 n n O1 HO1 NAG sing 286 n n O3 HO3 NAG sing 287 n n O4 HO4 NAG sing 288 n n O6 HO6 NAG sing 289 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MF1 _atom_sites.fract_transf_matrix[1][1] 0.013208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 601 528 NAG NAG . F 6 HOH A 1 701 82 HOH HOH . F 6 HOH A 2 702 91 HOH HOH . F 6 HOH A 3 703 14 HOH HOH . F 6 HOH A 4 704 81 HOH HOH . F 6 HOH A 5 705 56 HOH HOH . F 6 HOH A 6 706 11 HOH HOH . F 6 HOH A 7 707 34 HOH HOH . F 6 HOH A 8 708 43 HOH HOH . F 6 HOH A 9 709 79 HOH HOH . F 6 HOH A 10 710 52 HOH HOH . F 6 HOH A 11 711 68 HOH HOH . F 6 HOH A 12 712 53 HOH HOH . F 6 HOH A 13 713 71 HOH HOH . F 6 HOH A 14 714 4 HOH HOH . F 6 HOH A 15 715 93 HOH HOH . F 6 HOH A 16 716 118 HOH HOH . F 6 HOH A 17 717 35 HOH HOH . F 6 HOH A 18 718 10 HOH HOH . F 6 HOH A 19 719 17 HOH HOH . F 6 HOH A 20 720 20 HOH HOH . F 6 HOH A 21 721 13 HOH HOH . F 6 HOH A 22 722 30 HOH HOH . F 6 HOH A 23 723 32 HOH HOH . F 6 HOH A 24 724 55 HOH HOH . F 6 HOH A 25 725 98 HOH HOH . F 6 HOH A 26 726 76 HOH HOH . F 6 HOH A 27 727 119 HOH HOH . F 6 HOH A 28 728 95 HOH HOH . F 6 HOH A 29 729 37 HOH HOH . F 6 HOH A 30 730 97 HOH HOH . F 6 HOH A 31 731 86 HOH HOH . F 6 HOH A 32 732 105 HOH HOH . F 6 HOH A 33 733 70 HOH HOH . F 6 HOH A 34 734 24 HOH HOH . F 6 HOH A 35 735 84 HOH HOH . F 6 HOH A 36 736 80 HOH HOH . F 6 HOH A 37 737 47 HOH HOH . F 6 HOH A 38 738 83 HOH HOH . F 6 HOH A 39 739 72 HOH HOH . F 6 HOH A 40 740 78 HOH HOH . F 6 HOH A 41 741 40 HOH HOH . G 6 HOH H 1 301 61 HOH HOH . G 6 HOH H 2 302 77 HOH HOH . G 6 HOH H 3 303 87 HOH HOH . G 6 HOH H 4 304 114 HOH HOH . G 6 HOH H 5 305 94 HOH HOH . G 6 HOH H 6 306 31 HOH HOH . G 6 HOH H 7 307 111 HOH HOH . G 6 HOH H 8 308 51 HOH HOH . G 6 HOH H 9 309 6 HOH HOH . G 6 HOH H 10 310 63 HOH HOH . G 6 HOH H 11 311 112 HOH HOH . G 6 HOH H 12 312 26 HOH HOH . G 6 HOH H 13 313 3 HOH HOH . G 6 HOH H 14 314 44 HOH HOH . G 6 HOH H 15 315 50 HOH HOH . G 6 HOH H 16 316 67 HOH HOH . G 6 HOH H 17 317 110 HOH HOH . G 6 HOH H 18 318 99 HOH HOH . G 6 HOH H 19 319 29 HOH HOH . G 6 HOH H 20 320 62 HOH HOH . G 6 HOH H 21 321 38 HOH HOH . G 6 HOH H 22 322 75 HOH HOH . G 6 HOH H 23 323 28 HOH HOH . G 6 HOH H 24 324 57 HOH HOH . G 6 HOH H 25 325 122 HOH HOH . G 6 HOH H 26 326 60 HOH HOH . G 6 HOH H 27 327 46 HOH HOH . G 6 HOH H 28 328 120 HOH HOH . G 6 HOH H 29 329 92 HOH HOH . G 6 HOH H 30 330 27 HOH HOH . G 6 HOH H 31 331 48 HOH HOH . G 6 HOH H 32 332 22 HOH HOH . G 6 HOH H 33 333 7 HOH HOH . G 6 HOH H 34 334 101 HOH HOH . G 6 HOH H 35 335 121 HOH HOH . G 6 HOH H 36 336 41 HOH HOH . G 6 HOH H 37 337 15 HOH HOH . G 6 HOH H 38 338 74 HOH HOH . G 6 HOH H 39 339 109 HOH HOH . G 6 HOH H 40 340 103 HOH HOH . G 6 HOH H 41 341 117 HOH HOH . G 6 HOH H 42 342 88 HOH HOH . G 6 HOH H 43 343 45 HOH HOH . G 6 HOH H 44 344 58 HOH HOH . H 6 HOH L 1 301 69 HOH HOH . H 6 HOH L 2 302 59 HOH HOH . H 6 HOH L 3 303 16 HOH HOH . H 6 HOH L 4 304 73 HOH HOH . H 6 HOH L 5 305 89 HOH HOH . H 6 HOH L 6 306 2 HOH HOH . H 6 HOH L 7 307 100 HOH HOH . H 6 HOH L 8 308 113 HOH HOH . H 6 HOH L 9 309 33 HOH HOH . H 6 HOH L 10 310 8 HOH HOH . H 6 HOH L 11 311 19 HOH HOH . H 6 HOH L 12 312 25 HOH HOH . H 6 HOH L 13 313 39 HOH HOH . H 6 HOH L 14 314 36 HOH HOH . H 6 HOH L 15 315 1 HOH HOH . H 6 HOH L 16 316 106 HOH HOH . H 6 HOH L 17 317 18 HOH HOH . H 6 HOH L 18 318 23 HOH HOH . H 6 HOH L 19 319 5 HOH HOH . H 6 HOH L 20 320 49 HOH HOH . H 6 HOH L 21 321 42 HOH HOH . H 6 HOH L 22 322 90 HOH HOH . H 6 HOH L 23 323 54 HOH HOH . H 6 HOH L 24 324 64 HOH HOH . H 6 HOH L 25 325 66 HOH HOH . H 6 HOH L 26 326 108 HOH HOH . H 6 HOH L 27 327 21 HOH HOH . H 6 HOH L 28 328 12 HOH HOH . H 6 HOH L 29 329 104 HOH HOH . H 6 HOH L 30 330 65 HOH HOH . H 6 HOH L 31 331 9 HOH HOH . H 6 HOH L 32 332 115 HOH HOH . H 6 HOH L 33 333 96 HOH HOH . H 6 HOH L 34 334 85 HOH HOH . H 6 HOH L 35 335 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 75.534 32.533 167.565 1 83.25 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . E 5 74.506 31.469 167.966 1 92.31 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . E 5 74.917 30.79 169.271 1 101.29 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . E 5 76.338 30.255 169.174 1 102.86 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . E 5 77.286 31.377 168.767 1 97.22 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . E 5 78.704 30.902 168.553 1 99.83 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . E 5 72.063 31.415 167.725 1 83.96 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . E 5 70.782 32.161 167.942 1 78.83 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . E 5 73.18 32.05 168.095 1 83.15 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . E 5 74.017 29.724 169.551 1 105.41 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . E 5 76.745 29.721 170.429 1 103.92 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . E 5 76.849 31.947 167.524 1 99.29 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . E 5 78.8 30.043 167.425 1 105.96 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . E 5 72.088 30.291 167.233 1 90.59 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 76 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 1098 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #