data_7MFD # _model_server_result.job_id 1lnDUcaJ3ATSRrX4HwbuYg _model_server_result.datetime_utc '2024-10-19 22:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 7MFD # _exptl.entry_id 7MFD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 471.462 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(3-fluoro-4-{[4-methyl-2-oxo-7-(pyrimidin-2-yloxy)-2H-chromen-3-yl]methyl}pyridin-2-yl)-N'-methylsulfuric diamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MFD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 364 A SER 364 1_555 A N SEP 365 A SEP 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 365 A SEP 365 1_555 A N ALA 366 A ALA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 728 A ALA 728 1_555 A N SEP 729 A SEP 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C SEP 729 A SEP 729 1_555 A N GLU 730 A GLU 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 248 A CYS 248 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A SG CYS 251 A CYS 251 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A SG CYS 261 A CYS 261 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc4 A SG CYS 264 A CYS 264 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc5 A SG CYS 272 A CYS 272 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C21 H18 F N5 O5 S' _chem_comp.formula_weight 471.462 _chem_comp.id CHU _chem_comp.mon_nstd_flag . _chem_comp.name "N-(3-fluoro-4-{[4-methyl-2-oxo-7-(pyrimidin-2-yloxy)-2H-chromen-3-yl]methyl}pyridin-2-yl)-N'-methylsulfuric diamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CH5126766 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 CHU doub 70 n y C2 C1 CHU sing 71 n y O15 C1 CHU sing 72 n n O15 C16 CHU sing 73 n n C3 C6 CHU sing 74 n y N21 C16 CHU doub 75 n y N21 C20 CHU sing 76 n y C1 C4 CHU doub 77 n y C16 N17 CHU sing 78 n y C12 C7 CHU sing 79 n n C20 C19 CHU doub 80 n y C6 C7 CHU sing 81 n n C6 C5 CHU doub 82 n y C4 C5 CHU sing 83 n y C7 C8 CHU doub 84 n n C5 O10 CHU sing 85 n n N17 C18 CHU doub 86 n y C19 C18 CHU sing 87 n y C8 C13 CHU sing 88 n n C8 C9 CHU sing 89 n n O10 C9 CHU sing 90 n n C13 C14 CHU sing 91 n n C9 O11 CHU doub 92 n n F33 C22 CHU sing 93 n n C14 C22 CHU doub 94 n y C14 C26 CHU sing 95 n y C22 C23 CHU sing 96 n y C26 C25 CHU doub 97 n y C23 N27 CHU sing 98 n n C23 N24 CHU doub 99 n y N27 S28 CHU sing 100 n n C25 N24 CHU sing 101 n y C30 N29 CHU sing 102 n n N29 S28 CHU sing 103 n n O31 S28 CHU doub 104 n n S28 O32 CHU doub 105 n n C4 H1 CHU sing 106 n n C13 H2 CHU sing 107 n n C13 H3 CHU sing 108 n n C20 H4 CHU sing 109 n n C26 H5 CHU sing 110 n n C2 H6 CHU sing 111 n n C3 H7 CHU sing 112 n n C12 H8 CHU sing 113 n n C12 H9 CHU sing 114 n n C12 H10 CHU sing 115 n n C18 H11 CHU sing 116 n n C19 H12 CHU sing 117 n n C25 H13 CHU sing 118 n n N27 H14 CHU sing 119 n n N29 H15 CHU sing 120 n n C30 H16 CHU sing 121 n n C30 H17 CHU sing 122 n n C30 H18 CHU sing 123 n n # _atom_sites.entry_id 7MFD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN A 1 901 901 ZN ZN . F 4 ZN A 1 902 902 ZN ZN . G 5 CHU B 1 401 403 CHU CHU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 CHU . . . G 5 70.653 117.827 117.664 1 100.63 ? C4 CHU 401 B 1 HETATM 2 C C5 CHU . . . G 5 71.305 116.726 117.144 1 100.63 ? C5 CHU 401 B 1 HETATM 3 C C6 CHU . . . G 5 72.2 115.968 117.892 1 100.63 ? C6 CHU 401 B 1 HETATM 4 C C7 CHU . . . G 5 72.821 114.797 117.281 1 100.63 ? C7 CHU 401 B 1 HETATM 5 C C8 CHU . . . G 5 72.479 114.464 116.002 1 100.63 ? C8 CHU 401 B 1 HETATM 6 C C13 CHU . . . G 5 72.954 113.196 115.342 1 100.63 ? C13 CHU 401 B 1 HETATM 7 C C20 CHU . . . G 5 67.227 120.303 120.813 1 100.63 ? C20 CHU 401 B 1 HETATM 8 C C22 CHU . . . G 5 72.144 110.983 114.43 1 100.63 ? C22 CHU 401 B 1 HETATM 9 C C26 CHU . . . G 5 70.58 112.323 115.571 1 100.63 ? C26 CHU 401 B 1 HETATM 10 C C1 CHU . . . G 5 70.901 118.184 118.98 1 100.63 ? C1 CHU 401 B 1 HETATM 11 C C2 CHU . . . G 5 71.786 117.451 119.754 1 100.63 ? C2 CHU 401 B 1 HETATM 12 C C3 CHU . . . G 5 72.431 116.354 119.211 1 100.63 ? C3 CHU 401 B 1 HETATM 13 C C9 CHU . . . G 5 71.552 115.293 115.231 1 100.63 ? C9 CHU 401 B 1 HETATM 14 O O10 CHU . . . G 5 71.004 116.395 115.843 1 100.63 ? O10 CHU 401 B 1 HETATM 15 O O11 CHU . . . G 5 71.217 115.09 114.091 1 100.63 ? O11 CHU 401 B 1 HETATM 16 C C12 CHU . . . G 5 73.828 114.027 118.085 1 100.63 ? C12 CHU 401 B 1 HETATM 17 C C14 CHU . . . G 5 71.881 112.155 115.112 1 100.63 ? C14 CHU 401 B 1 HETATM 18 O O15 CHU . . . G 5 70.273 119.31 119.515 1 100.63 ? O15 CHU 401 B 1 HETATM 19 C C16 CHU . . . G 5 68.993 119.238 119.932 1 100.63 ? C16 CHU 401 B 1 HETATM 20 N N17 CHU . . . G 5 68.387 118.064 119.813 1 100.63 ? N17 CHU 401 B 1 HETATM 21 C C18 CHU . . . G 5 67.114 118.051 120.231 1 100.63 ? C18 CHU 401 B 1 HETATM 22 C C19 CHU . . . G 5 66.475 119.154 120.746 1 100.63 ? C19 CHU 401 B 1 HETATM 23 N N21 CHU . . . G 5 68.502 120.374 120.407 1 100.63 ? N21 CHU 401 B 1 HETATM 24 C C23 CHU . . . G 5 71.167 110.005 114.204 1 100.63 ? C23 CHU 401 B 1 HETATM 25 N N24 CHU . . . G 5 69.915 110.204 114.661 1 100.63 ? N24 CHU 401 B 1 HETATM 26 C C25 CHU . . . G 5 69.649 111.339 115.323 1 100.63 ? C25 CHU 401 B 1 HETATM 27 N N27 CHU . . . G 5 71.442 108.824 113.513 1 100.63 ? N27 CHU 401 B 1 HETATM 28 S S28 CHU . . . G 5 70.359 107.633 113.224 1 100.63 ? S28 CHU 401 B 1 HETATM 29 N N29 CHU . . . G 5 70.228 106.789 114.597 1 100.63 ? N29 CHU 401 B 1 HETATM 30 C C30 CHU . . . G 5 71.243 106.733 115.642 1 100.63 ? C30 CHU 401 B 1 HETATM 31 O O31 CHU . . . G 5 70.944 106.756 112.262 1 100.63 ? O31 CHU 401 B 1 HETATM 32 O O32 CHU . . . G 5 69.083 108.225 112.982 1 100.63 ? O32 CHU 401 B 1 HETATM 33 F F33 CHU . . . G 5 73.396 110.774 113.984 1 100.63 ? F33 CHU 401 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #