data_7MFT # _model_server_result.job_id HJdSsOpWBYydH4rWEAdwsA _model_server_result.datetime_utc '2024-12-21 17:13:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1601}' # _entry.id 7MFT # _exptl.entry_id 7MFT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MFT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octadecameric 18 'complete point assembly' 1 ? trimeric 3 'point asymmetric unit' 2 ? trimeric 3 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 (1-6) A,B,C,D,E,F,G,H 2 1 A,B,C,D,E,F,G,H 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.85642 -0.516279 0.000895 0.516245 0.856341 -0.01313 0.006012 0.011707 0.999913 -72.89736 -290.45112 -218.00716 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.499946 -0.865845 0.019156 0.866056 -0.499794 0.012352 -0.001121 0.022765 0.99974 501.39309 132.70919 -4.56838 3 'point symmetry operation' ? ? -0.499946 0.866056 -0.001121 -0.865845 -0.499794 0.022765 0.019156 0.012352 0.99974 135.73065 500.55993 -6.67646 4 'point symmetry operation' ? ? 0.466911 -0.884303 0.001533 -0.884303 -0.466912 -0.000924 0.001533 -0.000924 -0.999998 302.50898 502.55439 428.3495 5 'point symmetry operation' ? ? -0.999288 0.037732 -0.000446 0.037732 0.999008 -0.02363 -0.000446 -0.02363 -0.999721 419.25266 -2.78842 433.56393 6 'point symmetry operation' ? ? 0.532269 0.84636 -0.019122 0.84636 -0.532507 -0.010562 -0.019122 -0.010562 -0.999761 -76.77386 148.8159 434.77141 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 1113 G CYS 1113 1_555 E FE4 F3S . G F3S 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 B SG CYS 1119 G CYS 1119 1_555 E FE3 F3S . G F3S 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 B SG CYS 1124 G CYS 1124 1_555 E FE1 F3S . G F3S 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 C SG CYS 46 I CYS 46 1_555 G FE2 SF4 . I SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc5 C SG CYS 49 I CYS 49 1_555 G FE3 SF4 . I SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 C SG CYS 54 I CYS 54 1_555 G FE1 SF4 . I SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 C SG CYS 67 I CYS 67 1_555 H FE4 SF4 . I SF4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 C SG CYS 106 I CYS 106 1_555 H FE3 SF4 . I SF4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc9 C SG CYS 110 I CYS 110 1_555 H FE1 SF4 . I SF4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc10 C SG CYS 114 I CYS 114 1_555 G FE4 SF4 . I SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 183 n n N1 C10 FMN doub 184 n n C2 O2 FMN doub 185 n n C2 N3 FMN sing 186 n n N3 C4 FMN sing 187 n n N3 HN3 FMN sing 188 n n C4 O4 FMN doub 189 n n C4 C4A FMN sing 190 n n C4A N5 FMN doub 191 n n C4A C10 FMN sing 192 n n N5 C5A FMN sing 193 n n C5A C6 FMN doub 194 n y C5A C9A FMN sing 195 n y C6 C7 FMN sing 196 n y C6 H6 FMN sing 197 n n C7 C7M FMN sing 198 n n C7 C8 FMN doub 199 n y C7M HM71 FMN sing 200 n n C7M HM72 FMN sing 201 n n C7M HM73 FMN sing 202 n n C8 C8M FMN sing 203 n n C8 C9 FMN sing 204 n y C8M HM81 FMN sing 205 n n C8M HM82 FMN sing 206 n n C8M HM83 FMN sing 207 n n C9 C9A FMN doub 208 n y C9 H9 FMN sing 209 n n C9A N10 FMN sing 210 n n N10 C10 FMN sing 211 n n N10 C1' FMN sing 212 n n C1' C2' FMN sing 213 n n C1' "H1'1" FMN sing 214 n n C1' "H1'2" FMN sing 215 n n C2' O2' FMN sing 216 n n C2' C3' FMN sing 217 n n C2' H2' FMN sing 218 n n O2' HO2' FMN sing 219 n n C3' O3' FMN sing 220 n n C3' C4' FMN sing 221 n n C3' H3' FMN sing 222 n n O3' HO3' FMN sing 223 n n C4' O4' FMN sing 224 n n C4' C5' FMN sing 225 n n C4' H4' FMN sing 226 n n O4' HO4' FMN sing 227 n n C5' O5' FMN sing 228 n n C5' "H5'1" FMN sing 229 n n C5' "H5'2" FMN sing 230 n n O5' P FMN sing 231 n n P O1P FMN doub 232 n n P O2P FMN sing 233 n n P O3P FMN sing 234 n n O2P HOP2 FMN sing 235 n n O3P HOP3 FMN sing 236 n n # _atom_sites.entry_id 7MFT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FMN G 1 1601 1511 FMN FMN . E 5 F3S G 1 1602 1512 F3S F3S . F 6 FAD I 1 601 501 FAD FAD . G 7 SF4 I 1 602 502 SF4 SF4 . H 7 SF4 I 1 603 503 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 4 269.618 156.276 256.059 1 79.52 ? N1 FMN 1601 G 1 HETATM 2 C C2 FMN . . . D 4 269.507 157.06 257.189 1 79.52 ? C2 FMN 1601 G 1 HETATM 3 O O2 FMN . . . D 4 270.313 157.968 257.384 1 79.52 ? O2 FMN 1601 G 1 HETATM 4 N N3 FMN . . . D 4 268.499 156.826 258.1 1 79.52 ? N3 FMN 1601 G 1 HETATM 5 C C4 FMN . . . D 4 267.599 155.807 257.876 1 79.52 ? C4 FMN 1601 G 1 HETATM 6 O O4 FMN . . . D 4 266.696 155.592 258.683 1 79.52 ? O4 FMN 1601 G 1 HETATM 7 C C4A FMN . . . D 4 267.71 155.02 256.738 1 79.52 ? C4A FMN 1601 G 1 HETATM 8 N N5 FMN . . . D 4 266.806 154.007 256.528 1 79.52 ? N5 FMN 1601 G 1 HETATM 9 C C5A FMN . . . D 4 266.906 153.221 255.404 1 79.52 ? C5A FMN 1601 G 1 HETATM 10 C C6 FMN . . . D 4 265.978 152.206 255.219 1 79.52 ? C6 FMN 1601 G 1 HETATM 11 C C7 FMN . . . D 4 266.041 151.391 254.101 1 79.52 ? C7 FMN 1601 G 1 HETATM 12 C C7M FMN . . . D 4 265.017 150.301 253.941 1 79.52 ? C7M FMN 1601 G 1 HETATM 13 C C8 FMN . . . D 4 267.052 151.6 253.169 1 79.52 ? C8 FMN 1601 G 1 HETATM 14 C C8M FMN . . . D 4 267.148 150.742 251.946 1 79.52 ? C8M FMN 1601 G 1 HETATM 15 C C9 FMN . . . D 4 267.981 152.617 253.352 1 79.52 ? C9 FMN 1601 G 1 HETATM 16 C C9A FMN . . . D 4 267.918 153.441 254.474 1 79.52 ? C9A FMN 1601 G 1 HETATM 17 N N10 FMN . . . D 4 268.836 154.466 254.682 1 79.52 ? N10 FMN 1601 G 1 HETATM 18 C C10 FMN . . . D 4 268.724 155.252 255.819 1 79.52 ? C10 FMN 1601 G 1 HETATM 19 C C1' FMN . . . D 4 269.95 154.746 253.701 1 79.52 ? C1' FMN 1601 G 1 HETATM 20 C C2' FMN . . . D 4 271.155 153.867 254.022 1 79.52 ? C2' FMN 1601 G 1 HETATM 21 O O2' FMN . . . D 4 271.29 153.779 255.422 1 79.52 ? O2' FMN 1601 G 1 HETATM 22 C C3' FMN . . . D 4 272.466 154.407 253.439 1 79.52 ? C3' FMN 1601 G 1 HETATM 23 O O3' FMN . . . D 4 272.655 155.738 253.87 1 79.52 ? O3' FMN 1601 G 1 HETATM 24 C C4' FMN . . . D 4 272.544 154.37 251.911 1 79.52 ? C4' FMN 1601 G 1 HETATM 25 O O4' FMN . . . D 4 271.534 155.175 251.348 1 79.52 ? O4' FMN 1601 G 1 HETATM 26 C C5' FMN . . . D 4 272.423 152.949 251.375 1 79.52 ? C5' FMN 1601 G 1 HETATM 27 O O5' FMN . . . D 4 272.856 152.887 250.036 1 79.52 ? O5' FMN 1601 G 1 HETATM 28 P P FMN . . . D 4 272.673 151.522 249.204 1 79.52 ? P FMN 1601 G 1 HETATM 29 O O1P FMN . . . D 4 271.301 151.526 248.575 1 79.52 ? O1P FMN 1601 G 1 HETATM 30 O O2P FMN . . . D 4 273.731 151.429 248.132 1 79.52 ? O2P FMN 1601 G 1 HETATM 31 O O3P FMN . . . D 4 272.798 150.34 250.134 1 79.52 ? O3P FMN 1601 G 1 HETATM 32 H HN3 FMN . . . D 4 268.498 157.326 259.012 1 79.52 ? HN3 FMN 1601 G 1 HETATM 33 H H6 FMN . . . D 4 265.174 152.071 255.942 1 79.52 ? H6 FMN 1601 G 1 HETATM 34 H HM71 FMN . . . D 4 265.444 149.431 253.442 1 79.52 ? HM71 FMN 1601 G 1 HETATM 35 H HM72 FMN . . . D 4 264.184 150.678 253.347 1 79.52 ? HM72 FMN 1601 G 1 HETATM 36 H HM73 FMN . . . D 4 264.651 150.008 254.925 1 79.52 ? HM73 FMN 1601 G 1 HETATM 37 H HM81 FMN . . . D 4 267.892 151.158 251.267 1 79.52 ? HM81 FMN 1601 G 1 HETATM 38 H HM82 FMN . . . D 4 266.175 150.718 251.46 1 79.52 ? HM82 FMN 1601 G 1 HETATM 39 H HM83 FMN . . . D 4 267.438 149.73 252.231 1 79.52 ? HM83 FMN 1601 G 1 HETATM 40 H H9 FMN . . . D 4 268.888 152.608 252.747 1 79.52 ? H9 FMN 1601 G 1 HETATM 41 H "H1'1" FMN . . . D 4 270.24 155.794 253.742 1 79.52 ? "H1'1" FMN 1601 G 1 HETATM 42 H "H1'2" FMN . . . D 4 269.621 154.564 252.679 1 79.52 ? "H1'2" FMN 1601 G 1 HETATM 43 H H2' FMN . . . D 4 270.968 152.869 253.628 1 79.52 ? H2' FMN 1601 G 1 HETATM 44 H HO2' FMN . . . D 4 272.176 154.106 255.683 1 79.52 ? HO2' FMN 1601 G 1 HETATM 45 H H3' FMN . . . D 4 273.278 153.792 253.827 1 79.52 ? H3' FMN 1601 G 1 HETATM 46 H HO3' FMN . . . D 4 272.789 156.319 253.092 1 79.52 ? HO3' FMN 1601 G 1 HETATM 47 H H4' FMN . . . D 4 273.518 154.76 251.615 1 79.52 ? H4' FMN 1601 G 1 HETATM 48 H HO4' FMN . . . D 4 270.926 154.611 250.826 1 79.52 ? HO4' FMN 1601 G 1 HETATM 49 H "H5'1" FMN . . . D 4 273.032 152.281 251.983 1 79.52 ? "H5'1" FMN 1601 G 1 HETATM 50 H "H5'2" FMN . . . D 4 271.387 152.619 251.435 1 79.52 ? "H5'2" FMN 1601 G 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 50 #