data_7MFX # _model_server_result.job_id lngSTLrpcd3SprtzE170gg _model_server_result.datetime_utc '2024-11-15 07:12:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 7MFX # _exptl.entry_id 7MFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.996 _cell.angle_beta 86.63 _cell.angle_gamma 77.686 _cell.entry_id 7MFX _cell.length_a 36.687 _cell.length_b 54.515 _cell.length_c 63.931 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,J 1 1 B,F,K 2 1 C,G,H,L 3 1 D,I,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 108 A LYS 108 1_555 E C23 ZFJ . A ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.252 ? covale ? covale2 B NZ LYS 108 B LYS 108 1_555 F C23 ZFJ . B ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.253 ? covale ? covale3 C NZ LYS 108 C LYS 108 1_555 G C23 ZFJ . C ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.247 ? covale ? covale4 D NZ LYS 108 D LYS 108 1_555 I C23 ZFJ . D ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.246 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7MFX _atom_sites.fract_transf_matrix[1][1] 0.027258 _atom_sites.fract_transf_matrix[1][2] -0.00595 _atom_sites.fract_transf_matrix[1][3] -0.001681 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018776 _atom_sites.fract_transf_matrix[2][3] 0.00024 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZFJ A 1 201 2 ZFJ LIG . F 2 ZFJ B 1 201 1 ZFJ LIG . G 2 ZFJ C 1 201 4 ZFJ LIG . H 3 GOL C 1 202 1 GOL GOL . I 2 ZFJ D 1 201 3 ZFJ LIG . J 4 HOH A 1 301 229 HOH HOH . J 4 HOH A 2 302 87 HOH HOH . J 4 HOH A 3 303 230 HOH HOH . J 4 HOH A 4 304 228 HOH HOH . J 4 HOH A 5 305 83 HOH HOH . J 4 HOH A 6 306 74 HOH HOH . J 4 HOH A 7 307 18 HOH HOH . J 4 HOH A 8 308 122 HOH HOH . J 4 HOH A 9 309 67 HOH HOH . J 4 HOH A 10 310 110 HOH HOH . J 4 HOH A 11 311 214 HOH HOH . J 4 HOH A 12 312 77 HOH HOH . J 4 HOH A 13 313 46 HOH HOH . J 4 HOH A 14 314 85 HOH HOH . J 4 HOH A 15 315 157 HOH HOH . J 4 HOH A 16 316 136 HOH HOH . J 4 HOH A 17 317 226 HOH HOH . J 4 HOH A 18 318 103 HOH HOH . J 4 HOH A 19 319 156 HOH HOH . J 4 HOH A 20 320 59 HOH HOH . J 4 HOH A 21 321 24 HOH HOH . J 4 HOH A 22 322 4 HOH HOH . J 4 HOH A 23 323 109 HOH HOH . J 4 HOH A 24 324 70 HOH HOH . J 4 HOH A 25 325 26 HOH HOH . J 4 HOH A 26 326 8 HOH HOH . J 4 HOH A 27 327 90 HOH HOH . J 4 HOH A 28 328 43 HOH HOH . J 4 HOH A 29 329 53 HOH HOH . J 4 HOH A 30 330 132 HOH HOH . J 4 HOH A 31 331 82 HOH HOH . J 4 HOH A 32 332 22 HOH HOH . J 4 HOH A 33 333 16 HOH HOH . J 4 HOH A 34 334 60 HOH HOH . J 4 HOH A 35 335 13 HOH HOH . J 4 HOH A 36 336 111 HOH HOH . J 4 HOH A 37 337 69 HOH HOH . J 4 HOH A 38 338 123 HOH HOH . J 4 HOH A 39 339 119 HOH HOH . J 4 HOH A 40 340 84 HOH HOH . J 4 HOH A 41 341 49 HOH HOH . J 4 HOH A 42 342 124 HOH HOH . J 4 HOH A 43 343 40 HOH HOH . J 4 HOH A 44 344 134 HOH HOH . J 4 HOH A 45 345 126 HOH HOH . J 4 HOH A 46 346 91 HOH HOH . J 4 HOH A 47 347 34 HOH HOH . J 4 HOH A 48 348 113 HOH HOH . J 4 HOH A 49 349 9 HOH HOH . J 4 HOH A 50 350 25 HOH HOH . J 4 HOH A 51 351 246 HOH HOH . J 4 HOH A 52 352 27 HOH HOH . J 4 HOH A 53 353 171 HOH HOH . J 4 HOH A 54 354 114 HOH HOH . J 4 HOH A 55 355 64 HOH HOH . J 4 HOH A 56 356 258 HOH HOH . J 4 HOH A 57 357 104 HOH HOH . J 4 HOH A 58 358 227 HOH HOH . J 4 HOH A 59 359 68 HOH HOH . J 4 HOH A 60 360 115 HOH HOH . J 4 HOH A 61 361 95 HOH HOH . J 4 HOH A 62 362 92 HOH HOH . J 4 HOH A 63 363 96 HOH HOH . J 4 HOH A 64 364 139 HOH HOH . K 4 HOH B 1 301 42 HOH HOH . K 4 HOH B 2 302 107 HOH HOH . K 4 HOH B 3 303 231 HOH HOH . K 4 HOH B 4 304 234 HOH HOH . K 4 HOH B 5 305 170 HOH HOH . K 4 HOH B 6 306 235 HOH HOH . K 4 HOH B 7 307 2 HOH HOH . K 4 HOH B 8 308 31 HOH HOH . K 4 HOH B 9 309 45 HOH HOH . K 4 HOH B 10 310 232 HOH HOH . K 4 HOH B 11 311 58 HOH HOH . K 4 HOH B 12 312 23 HOH HOH . K 4 HOH B 13 313 81 HOH HOH . K 4 HOH B 14 314 247 HOH HOH . K 4 HOH B 15 315 150 HOH HOH . K 4 HOH B 16 316 160 HOH HOH . K 4 HOH B 17 317 162 HOH HOH . K 4 HOH B 18 318 5 HOH HOH . K 4 HOH B 19 319 185 HOH HOH . K 4 HOH B 20 320 30 HOH HOH . K 4 HOH B 21 321 57 HOH HOH . K 4 HOH B 22 322 151 HOH HOH . K 4 HOH B 23 323 166 HOH HOH . K 4 HOH B 24 324 173 HOH HOH . K 4 HOH B 25 325 37 HOH HOH . K 4 HOH B 26 326 6 HOH HOH . K 4 HOH B 27 327 63 HOH HOH . K 4 HOH B 28 328 73 HOH HOH . K 4 HOH B 29 329 163 HOH HOH . K 4 HOH B 30 330 153 HOH HOH . K 4 HOH B 31 331 225 HOH HOH . K 4 HOH B 32 332 237 HOH HOH . K 4 HOH B 33 333 167 HOH HOH . K 4 HOH B 34 334 32 HOH HOH . K 4 HOH B 35 335 14 HOH HOH . K 4 HOH B 36 336 75 HOH HOH . K 4 HOH B 37 337 159 HOH HOH . K 4 HOH B 38 338 12 HOH HOH . K 4 HOH B 39 339 144 HOH HOH . K 4 HOH B 40 340 76 HOH HOH . K 4 HOH B 41 341 39 HOH HOH . K 4 HOH B 42 342 242 HOH HOH . K 4 HOH B 43 343 1 HOH HOH . K 4 HOH B 44 344 61 HOH HOH . K 4 HOH B 45 345 146 HOH HOH . K 4 HOH B 46 346 169 HOH HOH . K 4 HOH B 47 347 168 HOH HOH . K 4 HOH B 48 348 243 HOH HOH . K 4 HOH B 49 349 245 HOH HOH . K 4 HOH B 50 350 236 HOH HOH . K 4 HOH B 51 351 3 HOH HOH . K 4 HOH B 52 352 137 HOH HOH . K 4 HOH B 53 353 125 HOH HOH . K 4 HOH B 54 354 145 HOH HOH . K 4 HOH B 55 355 240 HOH HOH . K 4 HOH B 56 356 161 HOH HOH . K 4 HOH B 57 357 93 HOH HOH . K 4 HOH B 58 358 241 HOH HOH . K 4 HOH B 59 359 155 HOH HOH . K 4 HOH B 60 360 154 HOH HOH . K 4 HOH B 61 361 135 HOH HOH . K 4 HOH B 62 362 133 HOH HOH . K 4 HOH B 63 363 251 HOH HOH . K 4 HOH B 64 364 164 HOH HOH . K 4 HOH B 65 365 28 HOH HOH . K 4 HOH B 66 366 208 HOH HOH . K 4 HOH B 67 367 80 HOH HOH . L 4 HOH C 1 301 224 HOH HOH . L 4 HOH C 2 302 209 HOH HOH . L 4 HOH C 3 303 47 HOH HOH . L 4 HOH C 4 304 147 HOH HOH . L 4 HOH C 5 305 88 HOH HOH . L 4 HOH C 6 306 195 HOH HOH . L 4 HOH C 7 307 201 HOH HOH . L 4 HOH C 8 308 175 HOH HOH . L 4 HOH C 9 309 140 HOH HOH . L 4 HOH C 10 310 149 HOH HOH . L 4 HOH C 11 311 190 HOH HOH . L 4 HOH C 12 312 184 HOH HOH . L 4 HOH C 13 313 188 HOH HOH . L 4 HOH C 14 314 207 HOH HOH . L 4 HOH C 15 315 213 HOH HOH . L 4 HOH C 16 316 254 HOH HOH . L 4 HOH C 17 317 182 HOH HOH . L 4 HOH C 18 318 200 HOH HOH . L 4 HOH C 19 319 72 HOH HOH . L 4 HOH C 20 320 86 HOH HOH . L 4 HOH C 21 321 202 HOH HOH . L 4 HOH C 22 322 198 HOH HOH . L 4 HOH C 23 323 191 HOH HOH . L 4 HOH C 24 324 7 HOH HOH . L 4 HOH C 25 325 253 HOH HOH . L 4 HOH C 26 326 252 HOH HOH . L 4 HOH C 27 327 177 HOH HOH . L 4 HOH C 28 328 11 HOH HOH . L 4 HOH C 29 329 19 HOH HOH . L 4 HOH C 30 330 35 HOH HOH . L 4 HOH C 31 331 204 HOH HOH . L 4 HOH C 32 332 152 HOH HOH . L 4 HOH C 33 333 17 HOH HOH . L 4 HOH C 34 334 212 HOH HOH . L 4 HOH C 35 335 186 HOH HOH . L 4 HOH C 36 336 206 HOH HOH . L 4 HOH C 37 337 62 HOH HOH . L 4 HOH C 38 338 142 HOH HOH . L 4 HOH C 39 339 210 HOH HOH . L 4 HOH C 40 340 20 HOH HOH . L 4 HOH C 41 341 199 HOH HOH . L 4 HOH C 42 342 211 HOH HOH . L 4 HOH C 43 343 89 HOH HOH . L 4 HOH C 44 344 187 HOH HOH . L 4 HOH C 45 345 203 HOH HOH . L 4 HOH C 46 346 238 HOH HOH . L 4 HOH C 47 347 10 HOH HOH . L 4 HOH C 48 348 141 HOH HOH . L 4 HOH C 49 349 143 HOH HOH . L 4 HOH C 50 350 205 HOH HOH . L 4 HOH C 51 351 196 HOH HOH . L 4 HOH C 52 352 249 HOH HOH . L 4 HOH C 53 353 250 HOH HOH . L 4 HOH C 54 354 78 HOH HOH . M 4 HOH D 1 301 215 HOH HOH . M 4 HOH D 2 302 255 HOH HOH . M 4 HOH D 3 303 52 HOH HOH . M 4 HOH D 4 304 174 HOH HOH . M 4 HOH D 5 305 264 HOH HOH . M 4 HOH D 6 306 222 HOH HOH . M 4 HOH D 7 307 79 HOH HOH . M 4 HOH D 8 308 48 HOH HOH . M 4 HOH D 9 309 15 HOH HOH . M 4 HOH D 10 310 263 HOH HOH . M 4 HOH D 11 311 55 HOH HOH . M 4 HOH D 12 312 29 HOH HOH . M 4 HOH D 13 313 66 HOH HOH . M 4 HOH D 14 314 256 HOH HOH . M 4 HOH D 15 315 41 HOH HOH . M 4 HOH D 16 316 223 HOH HOH . M 4 HOH D 17 317 219 HOH HOH . M 4 HOH D 18 318 262 HOH HOH . M 4 HOH D 19 319 36 HOH HOH . M 4 HOH D 20 320 33 HOH HOH . M 4 HOH D 21 321 257 HOH HOH . M 4 HOH D 22 322 216 HOH HOH . M 4 HOH D 23 323 265 HOH HOH . M 4 HOH D 24 324 21 HOH HOH . M 4 HOH D 25 325 220 HOH HOH . M 4 HOH D 26 326 51 HOH HOH . M 4 HOH D 27 327 98 HOH HOH . M 4 HOH D 28 328 112 HOH HOH . M 4 HOH D 29 329 50 HOH HOH . M 4 HOH D 30 330 218 HOH HOH . M 4 HOH D 31 331 176 HOH HOH . M 4 HOH D 32 332 65 HOH HOH . M 4 HOH D 33 333 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -11.122 22.149 44.876 1 36.92 ? C1 GOL 202 C 1 HETATM 2 O O1 GOL . . . H 3 -10.832 20.789 45.06 1 38.98 ? O1 GOL 202 C 1 HETATM 3 C C2 GOL . . . H 3 -10.523 22.568 43.504 1 33.9 ? C2 GOL 202 C 1 HETATM 4 O O2 GOL . . . H 3 -9.357 21.893 43.21 1 38.35 ? O2 GOL 202 C 1 HETATM 5 C C3 GOL . . . H 3 -10.287 24.077 43.587 1 41.64 ? C3 GOL 202 C 1 HETATM 6 O O3 GOL . . . H 3 -11.523 24.684 43.508 1 38.75 ? O3 GOL 202 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #