data_7MG8 # _model_server_result.job_id nzJFbQGve01Q_eB3qa9O3g _model_server_result.datetime_utc '2024-11-24 06:58:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":101}' # _entry.id 7MG8 # _exptl.entry_id 7MG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.351 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MG8 _cell.length_a 66.419 _cell.length_b 69.92 _cell.length_c 125.869 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 MAN . A MAN 303 1_555 K O6 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale2 J C1 MAN . B MAN 303 1_555 L O6 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale3 C P DC 1 C DC 1 1_555 K O4 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? covale ? covale4 D P DC 1 D DC 1 1_555 L O4 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc10 B OE2 GLU 8 B GLU 8 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc11 B OD2 ASP 10 B ASP 10 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc12 B OD1 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc13 B OD2 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc14 B O TYR 12 B TYR 12 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc15 B OD1 ASN 14 B ASN 14 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc16 B OD1 ASP 19 B ASP 19 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc17 B OD2 ASP 19 B ASP 19 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 B NE2 HIS 24 B HIS 24 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C14 H24 N2 O5' _chem_comp.formula_weight 300.351 _chem_comp.id SQ0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C1 SQ0 sing 375 n n C1 C2 SQ0 sing 376 n n O1 C2 SQ0 sing 377 n n O1 C3 SQ0 sing 378 n n O2 C8 SQ0 doub 379 n n C3 C4 SQ0 sing 380 n n C8 C7 SQ0 sing 381 n n C8 C5 SQ0 sing 382 n n C4 N1 SQ0 sing 383 n n O3 C7 SQ0 doub 384 n n C7 C6 SQ0 sing 385 n n C5 N1 SQ0 sing 386 n n C5 C6 SQ0 doub 387 n n C6 N2 SQ0 sing 388 n n N2 C14 SQ0 sing 389 n n C14 C13 SQ0 sing 390 n n C13 C12 SQ0 sing 391 n n C12 C11 SQ0 sing 392 n n C11 C10 SQ0 sing 393 n n C10 C9 SQ0 sing 394 n n C9 O4 SQ0 sing 395 n n C1 H1 SQ0 sing 396 n n C1 H2 SQ0 sing 397 n n C2 H3 SQ0 sing 398 n n C2 H4 SQ0 sing 399 n n C3 H5 SQ0 sing 400 n n C3 H6 SQ0 sing 401 n n C4 H7 SQ0 sing 402 n n C4 H8 SQ0 sing 403 n n N1 H9 SQ0 sing 404 n n O4 H10 SQ0 sing 405 n n C9 H11 SQ0 sing 406 n n C9 H12 SQ0 sing 407 n n C10 H13 SQ0 sing 408 n n C10 H14 SQ0 sing 409 n n C11 H15 SQ0 sing 410 n n C11 H16 SQ0 sing 411 n n C12 H17 SQ0 sing 412 n n C12 H18 SQ0 sing 413 n n C13 H19 SQ0 sing 414 n n C13 H20 SQ0 sing 415 n n C14 H21 SQ0 sing 416 n n C14 H22 SQ0 sing 417 n n N2 H23 SQ0 sing 418 n n O6 H24 SQ0 sing 419 n n # _atom_sites.entry_id 7MG8 _atom_sites.fract_transf_matrix[1][1] 0.015056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 301 238 MN MN . F 4 CA A 1 302 239 CA CA . G 5 MAN A 1 303 301 MAN LNK . H 3 MN B 1 301 238 MN MN . I 4 CA B 1 302 239 CA CA . J 5 MAN B 1 303 301 MAN LNK . K 6 SQ0 C 1 101 301 SQ0 LNK . L 6 SQ0 D 1 101 301 SQ0 LNK . M 7 HOH A 1 401 20 HOH HOH . M 7 HOH A 2 402 12 HOH HOH . M 7 HOH A 3 403 24 HOH HOH . M 7 HOH A 4 404 1 HOH HOH . M 7 HOH A 5 405 17 HOH HOH . M 7 HOH A 6 406 9 HOH HOH . M 7 HOH A 7 407 3 HOH HOH . M 7 HOH A 8 408 2 HOH HOH . M 7 HOH A 9 409 16 HOH HOH . M 7 HOH A 10 410 15 HOH HOH . M 7 HOH A 11 411 22 HOH HOH . M 7 HOH A 12 412 5 HOH HOH . N 7 HOH B 1 401 13 HOH HOH . N 7 HOH B 2 402 4 HOH HOH . N 7 HOH B 3 403 14 HOH HOH . N 7 HOH B 4 404 18 HOH HOH . N 7 HOH B 5 405 10 HOH HOH . N 7 HOH B 6 406 11 HOH HOH . N 7 HOH B 7 407 7 HOH HOH . N 7 HOH B 8 408 6 HOH HOH . N 7 HOH B 9 409 19 HOH HOH . O 7 HOH D 1 201 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SQ0 . . . K 6 25.179 -11.882 -26.49 1 83.22 ? C1 SQ0 101 C 1 HETATM 2 C C2 SQ0 . . . K 6 25.231 -10.396 -26.675 1 76.21 ? C2 SQ0 101 C 1 HETATM 3 C C3 SQ0 . . . K 6 24.506 -9.345 -24.658 1 82.47 ? C3 SQ0 101 C 1 HETATM 4 C C4 SQ0 . . . K 6 25.407 -8.104 -24.715 1 89.9 ? C4 SQ0 101 C 1 HETATM 5 C C5 SQ0 . . . K 6 27.448 -8.99 -23.72 1 88.66 ? C5 SQ0 101 C 1 HETATM 6 O O1 SQ0 . . . K 6 24.158 -9.788 -25.967 1 73.68 ? O1 SQ0 101 C 1 HETATM 7 N N1 SQ0 . . . K 6 26.465 -8.109 -23.715 1 87.95 ? N1 SQ0 101 C 1 HETATM 8 C C6 SQ0 . . . K 6 28.17 -9.678 -22.712 1 99.16 ? C6 SQ0 101 C 1 HETATM 9 C C7 SQ0 . . . K 6 29.012 -10.344 -23.723 1 87.97 ? C7 SQ0 101 C 1 HETATM 10 C C8 SQ0 . . . K 6 28.268 -9.605 -24.771 1 79.65 ? C8 SQ0 101 C 1 HETATM 11 O O2 SQ0 . . . K 6 28.313 -9.537 -25.992 1 77.84 ? O2 SQ0 101 C 1 HETATM 12 O O3 SQ0 . . . K 6 29.929 -11.164 -23.716 1 96.57 ? O3 SQ0 101 C 1 HETATM 13 O O4 SQ0 . . . K 6 26.669 -9.638 -13.322 1 226.07 ? O4 SQ0 101 C 1 HETATM 14 C C9 SQ0 . . . K 6 25.983 -9.607 -14.559 1 213.2 ? C9 SQ0 101 C 1 HETATM 15 C C10 SQ0 . . . K 6 26.892 -10.004 -15.704 1 202.28 ? C10 SQ0 101 C 1 HETATM 16 C C11 SQ0 . . . K 6 26.975 -8.982 -16.812 1 180.37 ? C11 SQ0 101 C 1 HETATM 17 C C12 SQ0 . . . K 6 26.936 -9.6 -18.186 1 152.1 ? C12 SQ0 101 C 1 HETATM 18 C C13 SQ0 . . . K 6 27.255 -8.646 -19.314 1 131.38 ? C13 SQ0 101 C 1 HETATM 19 C C14 SQ0 . . . K 6 26.911 -9.223 -20.673 1 118.62 ? C14 SQ0 101 C 1 HETATM 20 N N2 SQ0 . . . K 6 28.069 -9.744 -21.397 1 118.09 ? N2 SQ0 101 C 1 HETATM 21 O O6 SQ0 . . . K 6 24.151 -12.389 -27.349 1 78.35 ? O6 SQ0 101 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #