data_7MG8 # _model_server_result.job_id S-8JEQVoNdEyRvnoldfNLg _model_server_result.datetime_utc '2024-11-28 00:14:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 7MG8 # _exptl.entry_id 7MG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MG8 _cell.length_a 66.419 _cell.length_b 69.92 _cell.length_c 125.869 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 MAN . A MAN 303 1_555 K O6 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale2 J C1 MAN . B MAN 303 1_555 L O6 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale3 C P DC 1 C DC 1 1_555 K O4 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? covale ? covale4 D P DC 1 D DC 1 1_555 L O4 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc10 B OE2 GLU 8 B GLU 8 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc11 B OD2 ASP 10 B ASP 10 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc12 B OD1 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc13 B OD2 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc14 B O TYR 12 B TYR 12 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc15 B OD1 ASN 14 B ASN 14 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc16 B OD1 ASP 19 B ASP 19 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc17 B OD2 ASP 19 B ASP 19 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 B NE2 HIS 24 B HIS 24 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MG8 _atom_sites.fract_transf_matrix[1][1] 0.015056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 301 238 MN MN . F 4 CA A 1 302 239 CA CA . G 5 MAN A 1 303 301 MAN LNK . H 3 MN B 1 301 238 MN MN . I 4 CA B 1 302 239 CA CA . J 5 MAN B 1 303 301 MAN LNK . K 6 SQ0 C 1 101 301 SQ0 LNK . L 6 SQ0 D 1 101 301 SQ0 LNK . M 7 HOH A 1 401 20 HOH HOH . M 7 HOH A 2 402 12 HOH HOH . M 7 HOH A 3 403 24 HOH HOH . M 7 HOH A 4 404 1 HOH HOH . M 7 HOH A 5 405 17 HOH HOH . M 7 HOH A 6 406 9 HOH HOH . M 7 HOH A 7 407 3 HOH HOH . M 7 HOH A 8 408 2 HOH HOH . M 7 HOH A 9 409 16 HOH HOH . M 7 HOH A 10 410 15 HOH HOH . M 7 HOH A 11 411 22 HOH HOH . M 7 HOH A 12 412 5 HOH HOH . N 7 HOH B 1 401 13 HOH HOH . N 7 HOH B 2 402 4 HOH HOH . N 7 HOH B 3 403 14 HOH HOH . N 7 HOH B 4 404 18 HOH HOH . N 7 HOH B 5 405 10 HOH HOH . N 7 HOH B 6 406 11 HOH HOH . N 7 HOH B 7 407 7 HOH HOH . N 7 HOH B 8 408 6 HOH HOH . N 7 HOH B 9 409 19 HOH HOH . O 7 HOH D 1 201 8 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x -20.727 _atom_site.Cartn_y -61.819 _atom_site.Cartn_z -16.948 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #