data_7MG8 # _model_server_result.job_id 64N498YSjRxX6bb47yQmKg _model_server_result.datetime_utc '2024-11-01 21:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 7MG8 # _exptl.entry_id 7MG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MG8 _cell.length_a 66.419 _cell.length_b 69.92 _cell.length_c 125.869 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 MAN . A MAN 303 1_555 K O6 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale2 J C1 MAN . B MAN 303 1_555 L O6 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale3 C P DC 1 C DC 1 1_555 K O4 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? covale ? covale4 D P DC 1 D DC 1 1_555 L O4 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc10 B OE2 GLU 8 B GLU 8 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc11 B OD2 ASP 10 B ASP 10 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc12 B OD1 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc13 B OD2 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc14 B O TYR 12 B TYR 12 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc15 B OD1 ASN 14 B ASN 14 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc16 B OD1 ASP 19 B ASP 19 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc17 B OD2 ASP 19 B ASP 19 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 B NE2 HIS 24 B HIS 24 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 279 n n C1 O1 MAN sing 280 n n C1 O5 MAN sing 281 n n C1 H1 MAN sing 282 n n C2 C3 MAN sing 283 n n C2 O2 MAN sing 284 n n C2 H2 MAN sing 285 n n C3 C4 MAN sing 286 n n C3 O3 MAN sing 287 n n C3 H3 MAN sing 288 n n C4 C5 MAN sing 289 n n C4 O4 MAN sing 290 n n C4 H4 MAN sing 291 n n C5 C6 MAN sing 292 n n C5 O5 MAN sing 293 n n C5 H5 MAN sing 294 n n C6 O6 MAN sing 295 n n C6 H61 MAN sing 296 n n C6 H62 MAN sing 297 n n O1 HO1 MAN sing 298 n n O2 HO2 MAN sing 299 n n O3 HO3 MAN sing 300 n n O4 HO4 MAN sing 301 n n O6 HO6 MAN sing 302 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MG8 _atom_sites.fract_transf_matrix[1][1] 0.015056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 301 238 MN MN . F 4 CA A 1 302 239 CA CA . G 5 MAN A 1 303 301 MAN LNK . H 3 MN B 1 301 238 MN MN . I 4 CA B 1 302 239 CA CA . J 5 MAN B 1 303 301 MAN LNK . K 6 SQ0 C 1 101 301 SQ0 LNK . L 6 SQ0 D 1 101 301 SQ0 LNK . M 7 HOH A 1 401 20 HOH HOH . M 7 HOH A 2 402 12 HOH HOH . M 7 HOH A 3 403 24 HOH HOH . M 7 HOH A 4 404 1 HOH HOH . M 7 HOH A 5 405 17 HOH HOH . M 7 HOH A 6 406 9 HOH HOH . M 7 HOH A 7 407 3 HOH HOH . M 7 HOH A 8 408 2 HOH HOH . M 7 HOH A 9 409 16 HOH HOH . M 7 HOH A 10 410 15 HOH HOH . M 7 HOH A 11 411 22 HOH HOH . M 7 HOH A 12 412 5 HOH HOH . N 7 HOH B 1 401 13 HOH HOH . N 7 HOH B 2 402 4 HOH HOH . N 7 HOH B 3 403 14 HOH HOH . N 7 HOH B 4 404 18 HOH HOH . N 7 HOH B 5 405 10 HOH HOH . N 7 HOH B 6 406 11 HOH HOH . N 7 HOH B 7 407 7 HOH HOH . N 7 HOH B 8 408 6 HOH HOH . N 7 HOH B 9 409 19 HOH HOH . O 7 HOH D 1 201 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . G 5 23.946 -13.777 -27.36 1 66.07 ? C1 MAN 303 A 1 HETATM 2 C C2 MAN . . . G 5 22.456 -13.97 -27.641 1 67.5 ? C2 MAN 303 A 1 HETATM 3 C C3 MAN . . . G 5 21.645 -13.541 -26.435 1 60.21 ? C3 MAN 303 A 1 HETATM 4 C C4 MAN . . . G 5 22.001 -14.455 -25.29 1 62.19 ? C4 MAN 303 A 1 HETATM 5 C C5 MAN . . . G 5 23.518 -14.554 -25.021 1 62.16 ? C5 MAN 303 A 1 HETATM 6 C C6 MAN . . . G 5 23.901 -15.951 -24.427 1 68.39 ? C6 MAN 303 A 1 HETATM 7 O O2 MAN . . . G 5 22.204 -15.314 -28.044 1 75.28 ? O2 MAN 303 A 1 HETATM 8 O O3 MAN . . . G 5 20.236 -13.59 -26.691 1 51.31 ? O3 MAN 303 A 1 HETATM 9 O O4 MAN . . . G 5 21.271 -14.036 -24.136 1 57.59 ? O4 MAN 303 A 1 HETATM 10 O O5 MAN . . . G 5 24.407 -14.371 -26.143 1 59.56 ? O5 MAN 303 A 1 HETATM 11 O O6 MAN . . . G 5 22.759 -16.781 -24.142 1 77.98 ? O6 MAN 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #