data_7MG9 # _model_server_result.job_id 5ISDQDxvaOWcUjZjSc85rw _model_server_result.datetime_utc '2024-11-24 08:13:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 7MG9 # _exptl.entry_id 7MG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MG9 _cell.length_a 65.979 _cell.length_b 70.18 _cell.length_c 124.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 MAN . A MAN 303 1_555 K O6 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale2 J C1 MAN . B MAN 303 1_555 L O6 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale3 C P DA 1 C DA 1 1_555 K O4 SQ0 . C SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale4 D P DT 1 D DT 1 1_555 L O4 SQ0 . D SQ0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 B OE2 GLU 8 B GLU 8 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc11 B OD2 ASP 10 B ASP 10 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc12 B OD1 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc13 B OD2 ASP 10 B ASP 10 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc14 B O TYR 12 B TYR 12 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc15 B OD1 ASN 14 B ASN 14 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc16 B OD1 ASP 19 B ASP 19 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc17 B OD2 ASP 19 B ASP 19 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc18 B NE2 HIS 24 B HIS 24 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc19 H MN MN . B MN 301 1_555 N O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc20 I CA CA . B CA 302 1_555 N O HOH . B HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 280 n n C1 O1 MAN sing 281 n n C1 O5 MAN sing 282 n n C1 H1 MAN sing 283 n n C2 C3 MAN sing 284 n n C2 O2 MAN sing 285 n n C2 H2 MAN sing 286 n n C3 C4 MAN sing 287 n n C3 O3 MAN sing 288 n n C3 H3 MAN sing 289 n n C4 C5 MAN sing 290 n n C4 O4 MAN sing 291 n n C4 H4 MAN sing 292 n n C5 C6 MAN sing 293 n n C5 O5 MAN sing 294 n n C5 H5 MAN sing 295 n n C6 O6 MAN sing 296 n n C6 H61 MAN sing 297 n n C6 H62 MAN sing 298 n n O1 HO1 MAN sing 299 n n O2 HO2 MAN sing 300 n n O3 HO3 MAN sing 301 n n O4 HO4 MAN sing 302 n n O6 HO6 MAN sing 303 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MG9 _atom_sites.fract_transf_matrix[1][1] 0.015156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MN A 1 301 301 MN MN . F 5 CA A 1 302 302 CA CA . G 6 MAN A 1 303 303 MAN MAN . H 4 MN B 1 301 301 MN MN . I 5 CA B 1 302 302 CA CA . J 6 MAN B 1 303 303 MAN MAN . K 7 SQ0 C 1 101 101 SQ0 SQ0 . L 7 SQ0 D 1 101 101 SQ0 SQ0 . M 8 HOH A 1 401 401 HOH HOH . M 8 HOH A 2 402 402 HOH HOH . M 8 HOH A 3 403 403 HOH HOH . M 8 HOH A 4 404 404 HOH HOH . M 8 HOH A 5 405 405 HOH HOH . M 8 HOH A 6 406 406 HOH HOH . M 8 HOH A 7 407 407 HOH HOH . M 8 HOH A 8 408 408 HOH HOH . M 8 HOH A 9 409 409 HOH HOH . M 8 HOH A 10 410 410 HOH HOH . M 8 HOH A 11 411 411 HOH HOH . M 8 HOH A 12 412 412 HOH HOH . M 8 HOH A 13 413 413 HOH HOH . M 8 HOH A 14 414 414 HOH HOH . M 8 HOH A 15 415 415 HOH HOH . M 8 HOH A 16 416 416 HOH HOH . M 8 HOH A 17 417 417 HOH HOH . M 8 HOH A 18 418 418 HOH HOH . M 8 HOH A 19 419 419 HOH HOH . M 8 HOH A 20 420 420 HOH HOH . M 8 HOH A 21 421 421 HOH HOH . M 8 HOH A 22 422 422 HOH HOH . M 8 HOH A 23 423 423 HOH HOH . M 8 HOH A 24 424 424 HOH HOH . M 8 HOH A 25 425 425 HOH HOH . M 8 HOH A 26 426 426 HOH HOH . M 8 HOH A 27 427 427 HOH HOH . M 8 HOH A 28 428 428 HOH HOH . M 8 HOH A 29 429 429 HOH HOH . M 8 HOH A 30 430 430 HOH HOH . M 8 HOH A 31 431 431 HOH HOH . M 8 HOH A 32 432 432 HOH HOH . M 8 HOH A 33 433 433 HOH HOH . M 8 HOH A 34 434 434 HOH HOH . M 8 HOH A 35 435 435 HOH HOH . M 8 HOH A 36 436 436 HOH HOH . M 8 HOH A 37 437 437 HOH HOH . M 8 HOH A 38 438 438 HOH HOH . M 8 HOH A 39 439 439 HOH HOH . M 8 HOH A 40 440 440 HOH HOH . M 8 HOH A 41 441 441 HOH HOH . M 8 HOH A 42 442 442 HOH HOH . M 8 HOH A 43 443 443 HOH HOH . M 8 HOH A 44 444 444 HOH HOH . M 8 HOH A 45 445 445 HOH HOH . M 8 HOH A 46 446 446 HOH HOH . M 8 HOH A 47 447 447 HOH HOH . M 8 HOH A 48 448 448 HOH HOH . M 8 HOH A 49 449 449 HOH HOH . M 8 HOH A 50 450 450 HOH HOH . M 8 HOH A 51 451 451 HOH HOH . M 8 HOH A 52 452 452 HOH HOH . M 8 HOH A 53 453 453 HOH HOH . M 8 HOH A 54 454 454 HOH HOH . M 8 HOH A 55 455 455 HOH HOH . M 8 HOH A 56 456 456 HOH HOH . M 8 HOH A 57 457 457 HOH HOH . M 8 HOH A 58 458 458 HOH HOH . M 8 HOH A 59 459 459 HOH HOH . M 8 HOH A 60 460 460 HOH HOH . M 8 HOH A 61 461 461 HOH HOH . M 8 HOH A 62 462 462 HOH HOH . M 8 HOH A 63 463 463 HOH HOH . M 8 HOH A 64 464 464 HOH HOH . M 8 HOH A 65 465 465 HOH HOH . M 8 HOH A 66 466 466 HOH HOH . M 8 HOH A 67 467 467 HOH HOH . M 8 HOH A 68 468 468 HOH HOH . M 8 HOH A 69 469 469 HOH HOH . M 8 HOH A 70 470 470 HOH HOH . M 8 HOH A 71 471 471 HOH HOH . M 8 HOH A 72 472 472 HOH HOH . N 8 HOH B 1 401 401 HOH HOH . N 8 HOH B 2 402 402 HOH HOH . N 8 HOH B 3 403 403 HOH HOH . N 8 HOH B 4 404 404 HOH HOH . N 8 HOH B 5 405 405 HOH HOH . N 8 HOH B 6 406 406 HOH HOH . N 8 HOH B 7 407 407 HOH HOH . N 8 HOH B 8 408 408 HOH HOH . N 8 HOH B 9 409 409 HOH HOH . N 8 HOH B 10 410 410 HOH HOH . N 8 HOH B 11 411 411 HOH HOH . N 8 HOH B 12 412 412 HOH HOH . N 8 HOH B 13 413 413 HOH HOH . N 8 HOH B 14 414 414 HOH HOH . N 8 HOH B 15 415 415 HOH HOH . N 8 HOH B 16 416 416 HOH HOH . N 8 HOH B 17 417 417 HOH HOH . N 8 HOH B 18 418 418 HOH HOH . N 8 HOH B 19 419 419 HOH HOH . N 8 HOH B 20 420 420 HOH HOH . N 8 HOH B 21 421 421 HOH HOH . N 8 HOH B 22 422 422 HOH HOH . N 8 HOH B 23 423 423 HOH HOH . N 8 HOH B 24 424 424 HOH HOH . N 8 HOH B 25 425 425 HOH HOH . N 8 HOH B 26 426 426 HOH HOH . N 8 HOH B 27 427 427 HOH HOH . N 8 HOH B 28 428 428 HOH HOH . N 8 HOH B 29 429 429 HOH HOH . N 8 HOH B 30 430 430 HOH HOH . N 8 HOH B 31 431 431 HOH HOH . N 8 HOH B 32 432 432 HOH HOH . N 8 HOH B 33 433 433 HOH HOH . N 8 HOH B 34 434 434 HOH HOH . N 8 HOH B 35 435 435 HOH HOH . N 8 HOH B 36 436 436 HOH HOH . N 8 HOH B 37 437 437 HOH HOH . N 8 HOH B 38 438 438 HOH HOH . N 8 HOH B 39 439 439 HOH HOH . N 8 HOH B 40 440 440 HOH HOH . N 8 HOH B 41 441 441 HOH HOH . N 8 HOH B 42 442 442 HOH HOH . N 8 HOH B 43 443 443 HOH HOH . N 8 HOH B 44 444 444 HOH HOH . N 8 HOH B 45 445 445 HOH HOH . N 8 HOH B 46 446 446 HOH HOH . N 8 HOH B 47 447 447 HOH HOH . N 8 HOH B 48 448 448 HOH HOH . N 8 HOH B 49 449 449 HOH HOH . N 8 HOH B 50 450 450 HOH HOH . N 8 HOH B 51 451 451 HOH HOH . N 8 HOH B 52 452 452 HOH HOH . N 8 HOH B 53 453 453 HOH HOH . N 8 HOH B 54 454 454 HOH HOH . N 8 HOH B 55 455 455 HOH HOH . N 8 HOH B 56 456 456 HOH HOH . N 8 HOH B 57 457 457 HOH HOH . N 8 HOH B 58 458 458 HOH HOH . N 8 HOH B 59 459 459 HOH HOH . N 8 HOH B 60 460 460 HOH HOH . N 8 HOH B 61 461 461 HOH HOH . N 8 HOH B 62 462 462 HOH HOH . N 8 HOH B 63 463 463 HOH HOH . N 8 HOH B 64 464 464 HOH HOH . N 8 HOH B 65 465 465 HOH HOH . N 8 HOH B 66 466 466 HOH HOH . N 8 HOH B 67 467 467 HOH HOH . N 8 HOH B 68 468 468 HOH HOH . N 8 HOH B 69 469 469 HOH HOH . N 8 HOH B 70 470 470 HOH HOH . N 8 HOH B 71 471 471 HOH HOH . O 8 HOH C 1 201 201 HOH HOH . P 8 HOH D 1 201 201 HOH HOH . P 8 HOH D 2 202 202 HOH HOH . P 8 HOH D 3 203 203 HOH HOH . P 8 HOH D 4 204 204 HOH HOH . P 8 HOH D 5 205 205 HOH HOH . P 8 HOH D 6 206 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . G 6 23.425 14.079 27.272 1 36.63 ? C1 MAN 303 A 1 HETATM 2 C C2 MAN . . . G 6 22.058 14.547 27.757 1 36.9 ? C2 MAN 303 A 1 HETATM 3 C C3 MAN . . . G 6 21.054 14.415 26.631 1 37.81 ? C3 MAN 303 A 1 HETATM 4 C C4 MAN . . . G 6 21.515 15.231 25.42 1 36.76 ? C4 MAN 303 A 1 HETATM 5 C C5 MAN . . . G 6 22.971 14.965 25.052 1 32.94 ? C5 MAN 303 A 1 HETATM 6 C C6 MAN . . . G 6 23.565 16.018 24.125 1 29.62 ? C6 MAN 303 A 1 HETATM 7 O O2 MAN . . . G 6 22.121 15.89 28.232 1 33.66 ? O2 MAN 303 A 1 HETATM 8 O O3 MAN . . . G 6 19.756 14.841 27.085 1 36.84 ? O3 MAN 303 A 1 HETATM 9 O O4 MAN . . . G 6 20.67 14.926 24.302 1 36.89 ? O4 MAN 303 A 1 HETATM 10 O O5 MAN . . . G 6 23.863 14.835 26.155 1 34.54 ? O5 MAN 303 A 1 HETATM 11 O O6 MAN . . . G 6 23.5 17.354 24.618 1 26.47 ? O6 MAN 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #