data_7MGB # _model_server_result.job_id TMiL6foClD6_V95GpmUbyA _model_server_result.datetime_utc '2024-11-01 19:34:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":302}' # _entry.id 7MGB # _exptl.entry_id 7MGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MGB _cell.length_a 68.009 _cell.length_b 117.48 _cell.length_c 122.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K,L,M,Q,S 1 1 B,D,H,I,J,N,O,P,R,T 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 68.009 58.74 61.245 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc10 F MN MN . A MN 302 1_555 Q O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc11 G CA CA . A CA 303 1_555 Q O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc12 G CA CA . A CA 303 1_555 Q O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc13 B OE2 GLU 8 B GLU 8 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 B OD2 ASP 10 B ASP 10 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc15 B OD1 ASP 10 B ASP 10 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc16 B OD2 ASP 10 B ASP 10 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc17 B O TYR 12 B TYR 12 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc18 B OD1 ASN 14 B ASN 14 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc19 B OD1 ASP 19 B ASP 19 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc20 B OD2 ASP 19 B ASP 19 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc21 B NE2 HIS 24 B HIS 24 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc22 I MN MN . B MN 302 1_555 R O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc23 I MN MN . B MN 302 1_555 R O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc24 J CA CA . B CA 303 1_555 R O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc25 C OE2 GLU 8 C GLU 8 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc26 C OD2 ASP 10 C ASP 10 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc27 C OD1 ASP 10 C ASP 10 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc28 C OD2 ASP 10 C ASP 10 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc29 C O TYR 12 C TYR 12 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc30 C OD1 ASN 14 C ASN 14 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc31 C OD1 ASP 19 C ASP 19 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc32 C OD2 ASP 19 C ASP 19 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc33 C NE2 HIS 24 C HIS 24 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc34 L MN MN . C MN 302 1_555 S O HOH . C HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc35 M CA CA . C CA 303 1_555 S O HOH . C HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc36 M CA CA . C CA 303 1_555 S O HOH . C HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc37 D OE2 GLU 8 D GLU 8 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc38 D OD2 ASP 10 D ASP 10 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc39 D OD1 ASP 10 D ASP 10 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc40 D OD2 ASP 10 D ASP 10 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc41 D O TYR 12 D TYR 12 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc42 D OD1 ASN 14 D ASN 14 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc43 D OD1 ASP 19 D ASP 19 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc44 D OD2 ASP 19 D ASP 19 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc45 D NE2 HIS 24 D HIS 24 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc46 O MN MN . D MN 302 1_555 T O HOH . D HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc47 P CA CA . D CA 303 1_555 T O HOH . D HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc48 P CA CA . D CA 303 1_555 T O HOH . D HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MGB _atom_sites.fract_transf_matrix[1][1] 0.014704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MMA A 1 301 238 MMA MMA . F 3 MN A 1 302 239 MN MN . G 4 CA A 1 303 240 CA CA . H 2 MMA B 1 301 238 MMA MMA . I 3 MN B 1 302 239 MN MN . J 4 CA B 1 303 240 CA CA . K 2 MMA C 1 301 238 MMA MMA . L 3 MN C 1 302 239 MN MN . M 4 CA C 1 303 240 CA CA . N 2 MMA D 1 301 238 MMA MMA . O 3 MN D 1 302 239 MN MN . P 4 CA D 1 303 240 CA CA . Q 5 HOH A 1 401 69 HOH HOH . Q 5 HOH A 2 402 41 HOH HOH . Q 5 HOH A 3 403 98 HOH HOH . Q 5 HOH A 4 404 77 HOH HOH . Q 5 HOH A 5 405 83 HOH HOH . Q 5 HOH A 6 406 33 HOH HOH . Q 5 HOH A 7 407 60 HOH HOH . Q 5 HOH A 8 408 76 HOH HOH . Q 5 HOH A 9 409 88 HOH HOH . Q 5 HOH A 10 410 9 HOH HOH . Q 5 HOH A 11 411 29 HOH HOH . Q 5 HOH A 12 412 74 HOH HOH . Q 5 HOH A 13 413 99 HOH HOH . Q 5 HOH A 14 414 19 HOH HOH . Q 5 HOH A 15 415 93 HOH HOH . Q 5 HOH A 16 416 75 HOH HOH . Q 5 HOH A 17 417 95 HOH HOH . Q 5 HOH A 18 418 14 HOH HOH . Q 5 HOH A 19 419 50 HOH HOH . Q 5 HOH A 20 420 53 HOH HOH . Q 5 HOH A 21 421 55 HOH HOH . Q 5 HOH A 22 422 70 HOH HOH . Q 5 HOH A 23 423 3 HOH HOH . Q 5 HOH A 24 424 2 HOH HOH . Q 5 HOH A 25 425 7 HOH HOH . Q 5 HOH A 26 426 25 HOH HOH . Q 5 HOH A 27 427 57 HOH HOH . Q 5 HOH A 28 428 68 HOH HOH . Q 5 HOH A 29 429 94 HOH HOH . R 5 HOH B 1 401 102 HOH HOH . R 5 HOH B 2 402 89 HOH HOH . R 5 HOH B 3 403 22 HOH HOH . R 5 HOH B 4 404 101 HOH HOH . R 5 HOH B 5 405 54 HOH HOH . R 5 HOH B 6 406 82 HOH HOH . R 5 HOH B 7 407 17 HOH HOH . R 5 HOH B 8 408 64 HOH HOH . R 5 HOH B 9 409 100 HOH HOH . R 5 HOH B 10 410 15 HOH HOH . R 5 HOH B 11 411 56 HOH HOH . R 5 HOH B 12 412 37 HOH HOH . R 5 HOH B 13 413 23 HOH HOH . R 5 HOH B 14 414 42 HOH HOH . R 5 HOH B 15 415 6 HOH HOH . R 5 HOH B 16 416 61 HOH HOH . R 5 HOH B 17 417 46 HOH HOH . R 5 HOH B 18 418 47 HOH HOH . R 5 HOH B 19 419 72 HOH HOH . R 5 HOH B 20 420 45 HOH HOH . R 5 HOH B 21 421 13 HOH HOH . R 5 HOH B 22 422 90 HOH HOH . S 5 HOH C 1 401 62 HOH HOH . S 5 HOH C 2 402 71 HOH HOH . S 5 HOH C 3 403 16 HOH HOH . S 5 HOH C 4 404 44 HOH HOH . S 5 HOH C 5 405 32 HOH HOH . S 5 HOH C 6 406 59 HOH HOH . S 5 HOH C 7 407 105 HOH HOH . S 5 HOH C 8 408 48 HOH HOH . S 5 HOH C 9 409 103 HOH HOH . S 5 HOH C 10 410 30 HOH HOH . S 5 HOH C 11 411 12 HOH HOH . S 5 HOH C 12 412 79 HOH HOH . S 5 HOH C 13 413 73 HOH HOH . S 5 HOH C 14 414 67 HOH HOH . S 5 HOH C 15 415 34 HOH HOH . S 5 HOH C 16 416 91 HOH HOH . S 5 HOH C 17 417 39 HOH HOH . S 5 HOH C 18 418 10 HOH HOH . S 5 HOH C 19 419 8 HOH HOH . S 5 HOH C 20 420 84 HOH HOH . S 5 HOH C 21 421 86 HOH HOH . S 5 HOH C 22 422 21 HOH HOH . S 5 HOH C 23 423 36 HOH HOH . S 5 HOH C 24 424 20 HOH HOH . T 5 HOH D 1 401 24 HOH HOH . T 5 HOH D 2 402 81 HOH HOH . T 5 HOH D 3 403 106 HOH HOH . T 5 HOH D 4 404 92 HOH HOH . T 5 HOH D 5 405 11 HOH HOH . T 5 HOH D 6 406 35 HOH HOH . T 5 HOH D 7 407 66 HOH HOH . T 5 HOH D 8 408 107 HOH HOH . T 5 HOH D 9 409 28 HOH HOH . T 5 HOH D 10 410 78 HOH HOH . T 5 HOH D 11 411 65 HOH HOH . T 5 HOH D 12 412 5 HOH HOH . T 5 HOH D 13 413 97 HOH HOH . T 5 HOH D 14 414 18 HOH HOH . T 5 HOH D 15 415 51 HOH HOH . T 5 HOH D 16 416 63 HOH HOH . T 5 HOH D 17 417 1 HOH HOH . T 5 HOH D 18 418 49 HOH HOH . T 5 HOH D 19 419 58 HOH HOH . T 5 HOH D 20 420 26 HOH HOH . T 5 HOH D 21 421 80 HOH HOH . T 5 HOH D 22 422 4 HOH HOH . T 5 HOH D 23 423 52 HOH HOH . T 5 HOH D 24 424 31 HOH HOH . T 5 HOH D 25 425 38 HOH HOH . T 5 HOH D 26 426 27 HOH HOH . T 5 HOH D 27 427 40 HOH HOH . T 5 HOH D 28 428 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.565 _atom_site.Cartn_y 20.508 _atom_site.Cartn_z 50.625 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #