data_7MGC
#
_model_server_result.job_id            tV2hCR3nqX12hNxJs4fu_Q 
_model_server_result.datetime_utc      '2024-11-24 06:45:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    7MGC 
#
_exptl.entry_id    7MGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.182 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl alpha-D-mannopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MGC 
_cell.length_a            69.33 
_cell.length_b            117.34 
_cell.length_c            122.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K,L,M,Q,S 1 1 
B,D,H,I,J,N,O,P,R,T 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -58.67 61.2 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc5 A O TYR 12 A TYR 12 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc10 F MN MN . A MN 302 1_555 Q O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc11 B OE2 GLU 8 B GLU 8 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc12 B OD2 ASP 10 B ASP 10 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc13 B OD1 ASP 10 B ASP 10 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc14 B OD2 ASP 10 B ASP 10 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc15 B O TYR 12 B TYR 12 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc16 B OD1 ASN 14 B ASN 14 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc17 B OD1 ASP 19 B ASP 19 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? 
metalc ? metalc18 B OD2 ASP 19 B ASP 19 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc19 B NE2 HIS 24 B HIS 24 1_555 I MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc20 C OE2 GLU 8 C GLU 8 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? 
metalc ? metalc21 C OD2 ASP 10 C ASP 10 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc22 C OD1 ASP 10 C ASP 10 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc23 C OD2 ASP 10 C ASP 10 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
metalc ? metalc24 C O TYR 12 C TYR 12 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc25 C OD1 ASN 14 C ASN 14 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc26 C OD1 ASP 19 C ASP 19 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc27 C OD2 ASP 19 C ASP 19 1_555 M CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc28 C NE2 HIS 24 C HIS 24 1_555 L MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc29 D OE2 GLU 8 D GLU 8 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? 
metalc ? metalc30 D OD2 ASP 10 D ASP 10 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc31 D OD1 ASP 10 D ASP 10 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc32 D OD2 ASP 10 D ASP 10 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc33 D O TYR 12 D TYR 12 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc34 D OD1 ASN 14 D ASN 14 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc35 D OD1 ASP 19 D ASP 19 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc36 D OD2 ASP 19 D ASP 19 1_555 P CA CA . D CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc37 D NE2 HIS 24 D HIS 24 1_555 O MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc38 O MN MN . D MN 302 1_555 T O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
#
_chem_comp.formula           'C7 H14 O6' 
_chem_comp.formula_weight    194.182 
_chem_comp.id                MMA 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'methyl alpha-D-mannopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MMA sing 224 n n 
C1 O1 MMA sing 225 n n 
C1 O5 MMA sing 226 n n 
C1 H1 MMA sing 227 n n 
C2 C3 MMA sing 228 n n 
C2 O2 MMA sing 229 n n 
C2 H2 MMA sing 230 n n 
C3 C4 MMA sing 231 n n 
C3 O3 MMA sing 232 n n 
C3 H3 MMA sing 233 n n 
C4 C5 MMA sing 234 n n 
C4 O4 MMA sing 235 n n 
C4 H4 MMA sing 236 n n 
C5 C6 MMA sing 237 n n 
C5 O5 MMA sing 238 n n 
C5 H5 MMA sing 239 n n 
C6 O6 MMA sing 240 n n 
C6 H61 MMA sing 241 n n 
C6 H62 MMA sing 242 n n 
C7 O1 MMA sing 243 n n 
C7 H71 MMA sing 244 n n 
C7 H72 MMA sing 245 n n 
C7 H73 MMA sing 246 n n 
O2 HO2 MMA sing 247 n n 
O3 HO3 MMA sing 248 n n 
O4 HO4 MMA sing 249 n n 
O6 HO6 MMA sing 250 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 
MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     7MGC 
_atom_sites.fract_transf_matrix[1][1]    0.014424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MMA A 1 301 238 MMA MMA . 
F 3 MN A 1 302 239 MN MN . 
G 4 CA A 1 303 240 CA CA . 
H 2 MMA B 1 301 238 MMA MMA . 
I 3 MN B 1 302 239 MN MN . 
J 4 CA B 1 303 240 CA CA . 
K 2 MMA C 1 301 238 MMA MMA . 
L 3 MN C 1 302 239 MN MN . 
M 4 CA C 1 303 240 CA CA . 
N 2 MMA D 1 301 238 MMA MMA . 
O 3 MN D 1 302 239 MN MN . 
P 4 CA D 1 303 240 CA CA . 
Q 5 HOH A 1 401 29 HOH HOH . 
Q 5 HOH A 2 402 2 HOH HOH . 
Q 5 HOH A 3 403 39 HOH HOH . 
Q 5 HOH A 4 404 1 HOH HOH . 
Q 5 HOH A 5 405 22 HOH HOH . 
Q 5 HOH A 6 406 34 HOH HOH . 
Q 5 HOH A 7 407 15 HOH HOH . 
Q 5 HOH A 8 408 28 HOH HOH . 
Q 5 HOH A 9 409 11 HOH HOH . 
Q 5 HOH A 10 410 18 HOH HOH . 
Q 5 HOH A 11 411 42 HOH HOH . 
Q 5 HOH A 12 412 44 HOH HOH . 
Q 5 HOH A 13 413 9 HOH HOH . 
R 5 HOH B 1 401 21 HOH HOH . 
R 5 HOH B 2 402 4 HOH HOH . 
R 5 HOH B 3 403 5 HOH HOH . 
R 5 HOH B 4 404 8 HOH HOH . 
R 5 HOH B 5 405 10 HOH HOH . 
R 5 HOH B 6 406 37 HOH HOH . 
R 5 HOH B 7 407 19 HOH HOH . 
S 5 HOH C 1 401 38 HOH HOH . 
S 5 HOH C 2 402 7 HOH HOH . 
S 5 HOH C 3 403 24 HOH HOH . 
S 5 HOH C 4 404 36 HOH HOH . 
S 5 HOH C 5 405 25 HOH HOH . 
S 5 HOH C 6 406 26 HOH HOH . 
S 5 HOH C 7 407 13 HOH HOH . 
S 5 HOH C 8 408 6 HOH HOH . 
S 5 HOH C 9 409 27 HOH HOH . 
T 5 HOH D 1 401 12 HOH HOH . 
T 5 HOH D 2 402 40 HOH HOH . 
T 5 HOH D 3 403 16 HOH HOH . 
T 5 HOH D 4 404 23 HOH HOH . 
T 5 HOH D 5 405 33 HOH HOH . 
T 5 HOH D 6 406 14 HOH HOH . 
T 5 HOH D 7 407 35 HOH HOH . 
T 5 HOH D 8 408 20 HOH HOH . 
T 5 HOH D 9 409 3 HOH HOH . 
T 5 HOH D 10 410 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MMA . . . E 2 30.133 26.694 10.047 1 49.52 ? C1 MMA 301 A 1 
HETATM 2 C C2 MMA . . . E 2 28.736 26.439 9.495 1 53.29 ? C2 MMA 301 A 1 
HETATM 3 C C3 MMA . . . E 2 27.753 26.118 10.613 1 49.87 ? C3 MMA 301 A 1 
HETATM 4 C C4 MMA . . . E 2 28.293 25.033 11.537 1 49.71 ? C4 MMA 301 A 1 
HETATM 5 C C5 MMA . . . E 2 29.725 25.341 11.954 1 46.74 ? C5 MMA 301 A 1 
HETATM 6 C C6 MMA . . . E 2 30.311 24.17 12.714 1 49.14 ? C6 MMA 301 A 1 
HETATM 7 C C7 MMA . . . E 2 30.86 28.93 10.263 1 44.6 ? C7 MMA 301 A 1 
HETATM 8 O O1 MMA . . . E 2 30.133 27.862 10.866 1 49.88 ? O1 MMA 301 A 1 
HETATM 9 O O2 MMA . . . E 2 28.778 25.348 8.567 1 51.54 ? O2 MMA 301 A 1 
HETATM 10 O O3 MMA . . . E 2 26.525 25.688 10.021 1 45.21 ? O3 MMA 301 A 1 
HETATM 11 O O4 MMA . . . E 2 27.467 24.946 12.703 1 58.23 ? O4 MMA 301 A 1 
HETATM 12 O O5 MMA . . . E 2 30.544 25.564 10.81 1 42.52 ? O5 MMA 301 A 1 
HETATM 13 O O6 MMA . . . E 2 29.597 22.989 12.346 1 53.44 ? O6 MMA 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           13 
#