data_7MGK # _model_server_result.job_id eQQE-wt-HquFJX060sOgtQ _model_server_result.datetime_utc '2024-11-26 05:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 7MGK # _exptl.entry_id 7MGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.248 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.28 _cell.angle_beta 85.95 _cell.angle_gamma 74.79 _cell.entry_id 7MGK _cell.length_a 64.673 _cell.length_b 75.072 _cell.length_c 95.235 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C19 H14 Cl2 F3 N5 O2' _chem_comp.formula_weight 472.248 _chem_comp.id ZGD _chem_comp.mon_nstd_flag . _chem_comp.name "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL14 C13 ZGD sing 376 n n C13 C15 ZGD doub 377 n y C13 C12 ZGD sing 378 n y O11 C12 ZGD sing 379 n n O11 C10 ZGD sing 380 n n C15 C17 ZGD sing 381 n y C12 C40 ZGD doub 382 n y C17 N18 ZGD sing 383 n n C17 C38 ZGD doub 384 n y C40 C38 ZGD sing 385 n y C40 CL41 ZGD sing 386 n n C01 N05 ZGD sing 387 n n C08 C10 ZGD doub 388 n y C08 C07 ZGD sing 389 n y C10 N42 ZGD sing 390 n y N18 C20 ZGD sing 391 n n C20 N22 ZGD sing 392 n n C20 O21 ZGD doub 393 n n N22 C24 ZGD sing 394 n n C25 C24 ZGD doub 395 n y C25 C27 ZGD sing 396 n y C07 N05 ZGD sing 397 n n C07 N45 ZGD doub 398 n y N42 C43 ZGD doub 399 n y C24 C32 ZGD sing 400 n y C27 C29 ZGD doub 401 n y N45 C43 ZGD sing 402 n y C32 C31 ZGD doub 403 n y C29 C31 ZGD sing 404 n y C31 C34 ZGD sing 405 n n F37 C34 ZGD sing 406 n n C34 F36 ZGD sing 407 n n C34 F35 ZGD sing 408 n n C01 H1 ZGD sing 409 n n C01 H2 ZGD sing 410 n n C01 H3 ZGD sing 411 n n N05 H4 ZGD sing 412 n n C08 H5 ZGD sing 413 n n C15 H6 ZGD sing 414 n n N18 H7 ZGD sing 415 n n N22 H8 ZGD sing 416 n n C25 H9 ZGD sing 417 n n C27 H10 ZGD sing 418 n n C29 H11 ZGD sing 419 n n C32 H12 ZGD sing 420 n n C38 H13 ZGD sing 421 n n C43 H14 ZGD sing 422 n n # _atom_sites.entry_id 7MGK _atom_sites.fract_transf_matrix[1][1] 0.015462 _atom_sites.fract_transf_matrix[1][2] -0.004205 _atom_sites.fract_transf_matrix[1][3] -0.000668 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013804 _atom_sites.fract_transf_matrix[2][3] -0.00142 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZGD A 1 801 1 ZGD 329 . F 2 ZGD B 1 801 1 ZGD 329 . G 2 ZGD C 1 801 1 ZGD 329 . H 2 ZGD D 1 801 1 ZGD 329 . I 3 HOH A 1 901 8 HOH HOH . I 3 HOH A 2 902 4 HOH HOH . I 3 HOH A 3 903 3 HOH HOH . I 3 HOH A 4 904 7 HOH HOH . I 3 HOH A 5 905 15 HOH HOH . I 3 HOH A 6 906 6 HOH HOH . J 3 HOH B 1 901 5 HOH HOH . J 3 HOH B 2 902 10 HOH HOH . J 3 HOH B 3 903 11 HOH HOH . J 3 HOH B 4 904 12 HOH HOH . J 3 HOH B 5 905 14 HOH HOH . K 3 HOH C 1 901 13 HOH HOH . L 3 HOH D 1 901 16 HOH HOH . L 3 HOH D 2 902 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 ZGD . . . E 2 0.356 38.159 -12.585 1 34.6 ? C01 ZGD 801 A 1 HETATM 2 N N05 ZGD . . . E 2 -0.505 38.482 -11.444 1 31.39 ? N05 ZGD 801 A 1 HETATM 3 C C07 ZGD . . . E 2 -1.848 38.032 -11.468 1 38.26 ? C07 ZGD 801 A 1 HETATM 4 C C08 ZGD . . . E 2 -2.34 37.295 -12.563 1 33.07 ? C08 ZGD 801 A 1 HETATM 5 C C10 ZGD . . . E 2 -3.686 36.885 -12.513 1 41.33 ? C10 ZGD 801 A 1 HETATM 6 O O11 ZGD . . . E 2 -4.249 36.155 -13.534 1 40.19 ? O11 ZGD 801 A 1 HETATM 7 C C12 ZGD . . . E 2 -5.313 35.312 -13.27 1 44.53 ? C12 ZGD 801 A 1 HETATM 8 C C13 ZGD . . . E 2 -6.633 35.615 -13.649 1 48.74 ? C13 ZGD 801 A 1 HETATM 9 CL CL14 ZGD . . . E 2 -7.039 37.096 -14.467 1 77.96 ? CL14 ZGD 801 A 1 HETATM 10 C C15 ZGD . . . E 2 -7.676 34.725 -13.371 1 49.14 ? C15 ZGD 801 A 1 HETATM 11 C C17 ZGD . . . E 2 -7.438 33.52 -12.712 1 47.53 ? C17 ZGD 801 A 1 HETATM 12 N N18 ZGD . . . E 2 -8.547 32.663 -12.475 1 49.25 ? N18 ZGD 801 A 1 HETATM 13 C C20 ZGD . . . E 2 -8.545 31.52 -11.785 1 49.08 ? C20 ZGD 801 A 1 HETATM 14 O O21 ZGD . . . E 2 -7.512 31.073 -11.237 1 48.11 ? O21 ZGD 801 A 1 HETATM 15 N N22 ZGD . . . E 2 -9.705 30.866 -11.691 1 50.63 ? N22 ZGD 801 A 1 HETATM 16 C C24 ZGD . . . E 2 -9.854 29.639 -10.999 1 50.56 ? C24 ZGD 801 A 1 HETATM 17 C C25 ZGD . . . E 2 -10.662 28.644 -11.553 1 52.04 ? C25 ZGD 801 A 1 HETATM 18 C C27 ZGD . . . E 2 -10.825 27.421 -10.891 1 56.76 ? C27 ZGD 801 A 1 HETATM 19 C C29 ZGD . . . E 2 -10.187 27.185 -9.671 1 45.42 ? C29 ZGD 801 A 1 HETATM 20 C C31 ZGD . . . E 2 -9.387 28.185 -9.122 1 46.65 ? C31 ZGD 801 A 1 HETATM 21 C C32 ZGD . . . E 2 -9.221 29.406 -9.774 1 51.22 ? C32 ZGD 801 A 1 HETATM 22 C C34 ZGD . . . E 2 -8.69 27.937 -7.818 1 53.87 ? C34 ZGD 801 A 1 HETATM 23 F F35 ZGD . . . E 2 -9.522 27.267 -7.03 1 68.53 ? F35 ZGD 801 A 1 HETATM 24 F F36 ZGD . . . E 2 -8.336 29.094 -7.25 1 51.25 ? F36 ZGD 801 A 1 HETATM 25 F F37 ZGD . . . E 2 -7.611 27.202 -8.066 1 54.91 ? F37 ZGD 801 A 1 HETATM 26 C C38 ZGD . . . E 2 -6.127 33.213 -12.343 1 42.81 ? C38 ZGD 801 A 1 HETATM 27 C C40 ZGD . . . E 2 -5.085 34.097 -12.618 1 46.05 ? C40 ZGD 801 A 1 HETATM 28 CL CL41 ZGD . . . E 2 -3.482 33.654 -12.127 1 63.38 ? CL41 ZGD 801 A 1 HETATM 29 N N42 ZGD . . . E 2 -4.432 37.202 -11.439 1 41.06 ? N42 ZGD 801 A 1 HETATM 30 C C43 ZGD . . . E 2 -3.933 37.91 -10.415 1 38.66 ? C43 ZGD 801 A 1 HETATM 31 N N45 ZGD . . . E 2 -2.656 38.316 -10.43 1 38.56 ? N45 ZGD 801 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 420 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 31 #