data_7MGK
#
_model_server_result.job_id            vk_9CKOKS7xt-zWzu28XjQ 
_model_server_result.datetime_utc      '2024-11-26 05:28:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mgk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    7MGK 
#
_exptl.entry_id    7MGK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              472.248 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         83.28 
_cell.angle_beta          85.95 
_cell.angle_gamma         74.79 
_cell.entry_id            7MGK 
_cell.length_a            64.673 
_cell.length_b            75.072 
_cell.length_c            95.235 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MGK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C19 H14 Cl2 F3 N5 O2' 
_chem_comp.formula_weight    472.248 
_chem_comp.id                ZGD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL14 C13 ZGD sing 376 n n 
C13 C15 ZGD doub 377 n y 
C13 C12 ZGD sing 378 n y 
O11 C12 ZGD sing 379 n n 
O11 C10 ZGD sing 380 n n 
C15 C17 ZGD sing 381 n y 
C12 C40 ZGD doub 382 n y 
C17 N18 ZGD sing 383 n n 
C17 C38 ZGD doub 384 n y 
C40 C38 ZGD sing 385 n y 
C40 CL41 ZGD sing 386 n n 
C01 N05 ZGD sing 387 n n 
C08 C10 ZGD doub 388 n y 
C08 C07 ZGD sing 389 n y 
C10 N42 ZGD sing 390 n y 
N18 C20 ZGD sing 391 n n 
C20 N22 ZGD sing 392 n n 
C20 O21 ZGD doub 393 n n 
N22 C24 ZGD sing 394 n n 
C25 C24 ZGD doub 395 n y 
C25 C27 ZGD sing 396 n y 
C07 N05 ZGD sing 397 n n 
C07 N45 ZGD doub 398 n y 
N42 C43 ZGD doub 399 n y 
C24 C32 ZGD sing 400 n y 
C27 C29 ZGD doub 401 n y 
N45 C43 ZGD sing 402 n y 
C32 C31 ZGD doub 403 n y 
C29 C31 ZGD sing 404 n y 
C31 C34 ZGD sing 405 n n 
F37 C34 ZGD sing 406 n n 
C34 F36 ZGD sing 407 n n 
C34 F35 ZGD sing 408 n n 
C01 H1 ZGD sing 409 n n 
C01 H2 ZGD sing 410 n n 
C01 H3 ZGD sing 411 n n 
N05 H4 ZGD sing 412 n n 
C08 H5 ZGD sing 413 n n 
C15 H6 ZGD sing 414 n n 
N18 H7 ZGD sing 415 n n 
N22 H8 ZGD sing 416 n n 
C25 H9 ZGD sing 417 n n 
C27 H10 ZGD sing 418 n n 
C29 H11 ZGD sing 419 n n 
C32 H12 ZGD sing 420 n n 
C38 H13 ZGD sing 421 n n 
C43 H14 ZGD sing 422 n n 
#
_atom_sites.entry_id                     7MGK 
_atom_sites.fract_transf_matrix[1][1]    0.015462 
_atom_sites.fract_transf_matrix[1][2]    -0.004205 
_atom_sites.fract_transf_matrix[1][3]    -0.000668 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013804 
_atom_sites.fract_transf_matrix[2][3]    -0.00142 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010582 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZGD A 1 801 1 ZGD 329 . 
F 2 ZGD B 1 801 1 ZGD 329 . 
G 2 ZGD C 1 801 1 ZGD 329 . 
H 2 ZGD D 1 801 1 ZGD 329 . 
I 3 HOH A 1 901 8 HOH HOH . 
I 3 HOH A 2 902 4 HOH HOH . 
I 3 HOH A 3 903 3 HOH HOH . 
I 3 HOH A 4 904 7 HOH HOH . 
I 3 HOH A 5 905 15 HOH HOH . 
I 3 HOH A 6 906 6 HOH HOH . 
J 3 HOH B 1 901 5 HOH HOH . 
J 3 HOH B 2 902 10 HOH HOH . 
J 3 HOH B 3 903 11 HOH HOH . 
J 3 HOH B 4 904 12 HOH HOH . 
J 3 HOH B 5 905 14 HOH HOH . 
K 3 HOH C 1 901 13 HOH HOH . 
L 3 HOH D 1 901 16 HOH HOH . 
L 3 HOH D 2 902 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 ZGD . . . F 2 -20.847 -21.537 -24.351 1 48.9 ? C01 ZGD 801 B 1 
HETATM 2 N N05 ZGD . . . F 2 -20.474 -21.715 -25.76 1 44.27 ? N05 ZGD 801 B 1 
HETATM 3 C C07 ZGD . . . F 2 -20.444 -20.602 -26.634 1 49.08 ? C07 ZGD 801 B 1 
HETATM 4 C C08 ZGD . . . F 2 -21.009 -19.365 -26.271 1 51.35 ? C08 ZGD 801 B 1 
HETATM 5 C C10 ZGD . . . F 2 -20.943 -18.316 -27.205 1 52 ? C10 ZGD 801 B 1 
HETATM 6 O O11 ZGD . . . F 2 -21.454 -17.065 -26.932 1 54.81 ? O11 ZGD 801 B 1 
HETATM 7 C C12 ZGD . . . F 2 -20.888 -15.97 -27.56 1 51.56 ? C12 ZGD 801 B 1 
HETATM 8 C C13 ZGD . . . F 2 -21.615 -15.178 -28.466 1 56.52 ? C13 ZGD 801 B 1 
HETATM 9 CL CL14 ZGD . . . F 2 -23.277 -15.513 -28.873 1 84.31 ? CL14 ZGD 801 B 1 
HETATM 10 C C15 ZGD . . . F 2 -21.014 -14.081 -29.084 1 57.32 ? C15 ZGD 801 B 1 
HETATM 11 C C17 ZGD . . . F 2 -19.687 -13.754 -28.827 1 51.77 ? C17 ZGD 801 B 1 
HETATM 12 N N18 ZGD . . . F 2 -19.157 -12.617 -29.482 1 50.87 ? N18 ZGD 801 B 1 
HETATM 13 C C20 ZGD . . . F 2 -17.929 -12.12 -29.359 1 48.9 ? C20 ZGD 801 B 1 
HETATM 14 O O21 ZGD . . . F 2 -17.055 -12.64 -28.63 1 48.47 ? O21 ZGD 801 B 1 
HETATM 15 N N22 ZGD . . . F 2 -17.66 -11.028 -30.07 1 53.42 ? N22 ZGD 801 B 1 
HETATM 16 C C24 ZGD . . . F 2 -16.407 -10.375 -30.023 1 51.84 ? C24 ZGD 801 B 1 
HETATM 17 C C25 ZGD . . . F 2 -16.395 -8.989 -29.816 1 50.53 ? C25 ZGD 801 B 1 
HETATM 18 C C27 ZGD . . . F 2 -15.184 -8.294 -29.753 1 50.38 ? C27 ZGD 801 B 1 
HETATM 19 C C29 ZGD . . . F 2 -13.978 -8.989 -29.892 1 44.89 ? C29 ZGD 801 B 1 
HETATM 20 C C31 ZGD . . . F 2 -14.002 -10.373 -30.093 1 41.77 ? C31 ZGD 801 B 1 
HETATM 21 C C32 ZGD . . . F 2 -15.206 -11.074 -30.163 1 45.51 ? C32 ZGD 801 B 1 
HETATM 22 C C34 ZGD . . . F 2 -12.72 -11.131 -30.24 1 47.13 ? C34 ZGD 801 B 1 
HETATM 23 F F35 ZGD . . . F 2 -11.847 -10.343 -30.869 1 55.85 ? F35 ZGD 801 B 1 
HETATM 24 F F36 ZGD . . . F 2 -12.954 -12.241 -30.941 1 48.1 ? F36 ZGD 801 B 1 
HETATM 25 F F37 ZGD . . . F 2 -12.274 -11.46 -29.029 1 50.88 ? F37 ZGD 801 B 1 
HETATM 26 C C38 ZGD . . . F 2 -18.965 -14.526 -27.921 1 49.8 ? C38 ZGD 801 B 1 
HETATM 27 C C40 ZGD . . . F 2 -19.554 -15.622 -27.296 1 53.94 ? C40 ZGD 801 B 1 
HETATM 28 CL CL41 ZGD . . . F 2 -18.574 -16.538 -26.183 1 76.01 ? CL41 ZGD 801 B 1 
HETATM 29 N N42 ZGD . . . F 2 -20.338 -18.531 -28.382 1 53.56 ? N42 ZGD 801 B 1 
HETATM 30 C C43 ZGD . . . F 2 -19.811 -19.719 -28.699 1 49.73 ? C43 ZGD 801 B 1 
HETATM 31 N N45 ZGD . . . F 2 -19.865 -20.737 -27.833 1 48.44 ? N45 ZGD 801 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#