data_7MGW # _model_server_result.job_id cOEnoTPiehsddh_Ju0iEuA _model_server_result.datetime_utc '2025-04-04 16:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mgw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":707}' # _entry.id 7MGW # _exptl.entry_id 7MGW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 170.335 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MGW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 I N N ? 6 K N N ? 6 L N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 1402 NAG 4 n D NAG 2 D 2 NAG A 1403 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 200 1_555 A SG CYS 131 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 23 C CYS 43 1_555 C SG CYS 92 C CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 130 A ASN 208 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 191 n n C1 H11 D12 sing 192 n n C1 H12 D12 sing 193 n n C1 H13 D12 sing 194 n n C2 C3 D12 sing 195 n n C2 H21 D12 sing 196 n n C2 H22 D12 sing 197 n n C3 C4 D12 sing 198 n n C3 H31 D12 sing 199 n n C3 H32 D12 sing 200 n n C4 C5 D12 sing 201 n n C4 H41 D12 sing 202 n n C4 H42 D12 sing 203 n n C5 C6 D12 sing 204 n n C5 H51 D12 sing 205 n n C5 H52 D12 sing 206 n n C6 C7 D12 sing 207 n n C6 H61 D12 sing 208 n n C6 H62 D12 sing 209 n n C7 C8 D12 sing 210 n n C7 H71 D12 sing 211 n n C7 H72 D12 sing 212 n n C8 C9 D12 sing 213 n n C8 H81 D12 sing 214 n n C8 H82 D12 sing 215 n n C9 C10 D12 sing 216 n n C9 H91 D12 sing 217 n n C9 H92 D12 sing 218 n n C10 C11 D12 sing 219 n n C10 H101 D12 sing 220 n n C10 H102 D12 sing 221 n n C11 C12 D12 sing 222 n n C11 H111 D12 sing 223 n n C11 H112 D12 sing 224 n n C12 H121 D12 sing 225 n n C12 H122 D12 sing 226 n n C12 H123 D12 sing 227 n n # _atom_sites.entry_id 7MGW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CL A 1 701 909 CL CL . F 6 D12 A 1 702 1001 D12 D12 . G 7 LNK A 1 703 1003 LNK LNK . H 8 HP6 A 1 704 1004 HP6 HP6 . I 6 D12 A 1 705 1005 D12 D12 . J 9 D10 A 1 706 1006 D10 D10 . K 6 D12 A 1 707 1007 D12 D12 . L 6 D12 A 1 708 1008 D12 D12 . M 8 HP6 A 1 709 1009 HP6 HP6 . N 8 HP6 A 1 710 1010 HP6 HP6 . O 8 HP6 A 1 711 1011 HP6 HP6 . P 10 SRO A 1 712 1101 SRO LIG . Q 8 HP6 A 1 713 1102 HP6 HP6 . R 8 HP6 A 1 714 1103 HP6 HP6 . S 10 SRO A 1 715 1301 SRO LIG . T 11 CLR A 1 716 1401 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . K 6 109.806 132.312 121.96 1 140.74 ? C1 D12 707 A 1 HETATM 2 C C2 D12 . . . K 6 111.274 131.924 121.8 1 140.74 ? C2 D12 707 A 1 HETATM 3 C C3 D12 . . . K 6 111.431 131.015 120.583 1 140.74 ? C3 D12 707 A 1 HETATM 4 C C4 D12 . . . K 6 112.893 130.594 120.449 1 140.74 ? C4 D12 707 A 1 HETATM 5 C C5 D12 . . . K 6 113.091 129.852 119.129 1 140.74 ? C5 D12 707 A 1 HETATM 6 C C6 D12 . . . K 6 114.576 129.56 118.928 1 140.74 ? C6 D12 707 A 1 HETATM 7 C C7 D12 . . . K 6 114.796 128.973 117.536 1 140.74 ? C7 D12 707 A 1 HETATM 8 C C8 D12 . . . K 6 116.292 128.797 117.287 1 140.74 ? C8 D12 707 A 1 HETATM 9 C C9 D12 . . . K 6 116.518 128.323 115.854 1 140.74 ? C9 D12 707 A 1 HETATM 10 C C10 D12 . . . K 6 118.017 128.217 115.582 1 140.74 ? C10 D12 707 A 1 HETATM 11 C C11 D12 . . . K 6 118.243 127.791 114.134 1 140.74 ? C11 D12 707 A 1 HETATM 12 C C12 D12 . . . K 6 119.742 127.705 113.857 1 140.74 ? C12 D12 707 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #