data_7MGX # _model_server_result.job_id l4JVx_sh9SexpZ4DTvoVdw _model_server_result.datetime_utc '2024-11-25 23:18:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 7MGX # _exptl.entry_id 7MGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1,1'-dimethyl-4,4'-bipyridin-1-ium" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.03 _cell.angle_beta 90.33 _cell.angle_gamma 109.2 _cell.entry_id 7MGX _cell.length_a 50.91 _cell.length_b 75.07 _cell.length_c 111.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # _chem_comp.formula 'C12 H14 N2 2' _chem_comp.formula_weight 186.253 _chem_comp.id KHJ _chem_comp.mon_nstd_flag . _chem_comp.name "1,1'-dimethyl-4,4'-bipyridin-1-ium" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 N2 KHJ sing 171 n n C10 N2 KHJ doub 172 n y C10 C6 KHJ sing 173 n y N2 C12 KHJ sing 174 n y C6 C4 KHJ doub 175 n y C12 C8 KHJ doub 176 n y C7 C11 KHJ doub 177 n y C7 C3 KHJ sing 178 n y C4 C8 KHJ sing 179 n y C4 C3 KHJ sing 180 n n C11 N1 KHJ sing 181 n y C3 C5 KHJ doub 182 n y N1 C13 KHJ sing 183 n n N1 C9 KHJ doub 184 n y C5 C9 KHJ sing 185 n y C14 H1 KHJ sing 186 n n C14 H2 KHJ sing 187 n n C14 H3 KHJ sing 188 n n C12 H4 KHJ sing 189 n n C8 H5 KHJ sing 190 n n C6 H6 KHJ sing 191 n n C10 H7 KHJ sing 192 n n C5 H8 KHJ sing 193 n n C9 H9 KHJ sing 194 n n C7 H10 KHJ sing 195 n n C11 H11 KHJ sing 196 n n C13 H12 KHJ sing 197 n n C13 H13 KHJ sing 198 n n C13 H14 KHJ sing 199 n n # _atom_sites.entry_id 7MGX _atom_sites.fract_transf_matrix[1][1] 0.019643 _atom_sites.fract_transf_matrix[1][2] 0.00684 _atom_sites.fract_transf_matrix[1][3] 0.000384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014105 _atom_sites.fract_transf_matrix[2][3] 0.000558 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 KHJ A 1 201 202 KHJ MEV . J 3 KHJ E 1 201 202 KHJ MEV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 KHJ . . . I 3 -27.216 11.659 -23.88 1 82.65 ? C14 KHJ 201 A 1 HETATM 2 N N2 KHJ . . . I 3 -26.488 11.235 -22.682 1 82.98 ? N2 KHJ 201 A 1 HETATM 3 C C12 KHJ . . . I 3 -25.757 10.084 -22.689 1 76.69 ? C12 KHJ 201 A 1 HETATM 4 C C8 KHJ . . . I 3 -25.179 9.606 -21.574 1 72.58 ? C8 KHJ 201 A 1 HETATM 5 C C4 KHJ . . . I 3 -25.317 10.285 -20.324 1 75.18 ? C4 KHJ 201 A 1 HETATM 6 C C6 KHJ . . . I 3 -26.043 11.516 -20.373 1 80.87 ? C6 KHJ 201 A 1 HETATM 7 C C10 KHJ . . . I 3 -26.596 11.946 -21.521 1 84.05 ? C10 KHJ 201 A 1 HETATM 8 C C3 KHJ . . . I 3 -24.914 9.709 -19.124 1 70.76 ? C3 KHJ 201 A 1 HETATM 9 C C5 KHJ . . . I 3 -25.212 10.299 -17.856 1 72.53 ? C5 KHJ 201 A 1 HETATM 10 C C9 KHJ . . . I 3 -25.002 9.62 -16.716 1 73.4 ? C9 KHJ 201 A 1 HETATM 11 C C7 KHJ . . . I 3 -24.321 8.411 -19.07 1 66.82 ? C7 KHJ 201 A 1 HETATM 12 C C11 KHJ . . . I 3 -24.139 7.783 -17.898 1 69.72 ? C11 KHJ 201 A 1 HETATM 13 N N1 KHJ . . . I 3 -24.499 8.353 -16.717 1 73 ? N1 KHJ 201 A 1 HETATM 14 C C13 KHJ . . . I 3 -24.448 7.578 -15.477 1 72.26 ? C13 KHJ 201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #