data_7MH5 # _model_server_result.job_id FSJZpS1lA2ZMuIKKdPqR3Q _model_server_result.datetime_utc '2024-11-24 03:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":407}' # _entry.id 7MH5 # _exptl.entry_id 7MH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MH5 _cell.length_a 141.414 _cell.length_b 141.414 _cell.length_c 186.502 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LEU 210 M LEU 209 1_555 C N TYI 211 M TYI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 C C TYI 211 M TYI 210 1_555 C N GLY 212 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? metalc ? metalc1 B NE2 HIS 191 L HIS 190 1_555 O FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 B NE2 HIS 231 L HIS 230 1_555 O FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 C NE2 HIS 220 M HIS 219 1_555 O FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 C OE1 GLU 235 M GLU 234 1_555 O FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc5 C OE2 GLU 235 M GLU 234 1_555 O FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc6 C NE2 HIS 267 M HIS 266 1_555 O FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 722 n n N1 CM1 LDA sing 723 n n N1 CM2 LDA sing 724 n n N1 C1 LDA sing 725 n n CM1 HM11 LDA sing 726 n n CM1 HM12 LDA sing 727 n n CM1 HM13 LDA sing 728 n n CM2 HM21 LDA sing 729 n n CM2 HM22 LDA sing 730 n n CM2 HM23 LDA sing 731 n n C1 C2 LDA sing 732 n n C1 H11 LDA sing 733 n n C1 H12 LDA sing 734 n n C2 C3 LDA sing 735 n n C2 H21 LDA sing 736 n n C2 H22 LDA sing 737 n n C3 C4 LDA sing 738 n n C3 H31 LDA sing 739 n n C3 H32 LDA sing 740 n n C4 C5 LDA sing 741 n n C4 H41 LDA sing 742 n n C4 H42 LDA sing 743 n n C5 C6 LDA sing 744 n n C5 H51 LDA sing 745 n n C5 H52 LDA sing 746 n n C6 C7 LDA sing 747 n n C6 H61 LDA sing 748 n n C6 H62 LDA sing 749 n n C7 C8 LDA sing 750 n n C7 H71 LDA sing 751 n n C7 H72 LDA sing 752 n n C8 C9 LDA sing 753 n n C8 H81 LDA sing 754 n n C8 H82 LDA sing 755 n n C9 C10 LDA sing 756 n n C9 H91 LDA sing 757 n n C9 H92 LDA sing 758 n n C10 C11 LDA sing 759 n n C10 H101 LDA sing 760 n n C10 H102 LDA sing 761 n n C11 C12 LDA sing 762 n n C11 H111 LDA sing 763 n n C11 H112 LDA sing 764 n n C12 H121 LDA sing 765 n n C12 H122 LDA sing 766 n n C12 H123 LDA sing 767 n n # _atom_sites.entry_id 7MH5 _atom_sites.fract_transf_matrix[1][1] 0.007071 _atom_sites.fract_transf_matrix[1][2] 0.004083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 1251 LDA LDA . E 5 BPH L 1 301 1286 BPH BPH . F 6 U10 L 1 302 1287 U10 U10 . G 7 BCL L 1 303 1288 BCL BCL . H 7 BCL M 1 401 1282 BCL BCL . I 7 BCL M 1 402 1303 BCL BCL . J 7 BCL M 1 403 1304 BCL BCL . K 4 LDA M 1 404 1305 LDA LDA . L 4 LDA M 1 405 1306 LDA LDA . M 4 LDA M 1 406 1307 LDA LDA . N 4 LDA M 1 407 1308 LDA LDA . O 8 FE M 1 408 1309 FE FE . P 5 BPH M 1 409 1310 BPH BPH . Q 6 U10 M 1 410 1311 U10 U10 . R 9 SPO M 1 411 1312 SPO SPO . S 10 CDL M 1 412 1313 CDL CDL . T 11 HOH H 1 401 62 HOH HOH . T 11 HOH H 2 402 118 HOH HOH . T 11 HOH H 3 403 182 HOH HOH . T 11 HOH H 4 404 4 HOH HOH . T 11 HOH H 5 405 55 HOH HOH . T 11 HOH H 6 406 25 HOH HOH . T 11 HOH H 7 407 29 HOH HOH . T 11 HOH H 8 408 3 HOH HOH . T 11 HOH H 9 409 153 HOH HOH . T 11 HOH H 10 410 113 HOH HOH . T 11 HOH H 11 411 78 HOH HOH . T 11 HOH H 12 412 14 HOH HOH . T 11 HOH H 13 413 87 HOH HOH . T 11 HOH H 14 414 42 HOH HOH . T 11 HOH H 15 415 60 HOH HOH . T 11 HOH H 16 416 48 HOH HOH . T 11 HOH H 17 417 19 HOH HOH . T 11 HOH H 18 418 117 HOH HOH . T 11 HOH H 19 419 120 HOH HOH . T 11 HOH H 20 420 134 HOH HOH . T 11 HOH H 21 421 141 HOH HOH . T 11 HOH H 22 422 142 HOH HOH . T 11 HOH H 23 423 126 HOH HOH . T 11 HOH H 24 424 81 HOH HOH . T 11 HOH H 25 425 140 HOH HOH . T 11 HOH H 26 426 69 HOH HOH . T 11 HOH H 27 427 90 HOH HOH . T 11 HOH H 28 428 63 HOH HOH . T 11 HOH H 29 429 91 HOH HOH . T 11 HOH H 30 430 114 HOH HOH . T 11 HOH H 31 431 98 HOH HOH . T 11 HOH H 32 432 96 HOH HOH . T 11 HOH H 33 433 28 HOH HOH . T 11 HOH H 34 434 20 HOH HOH . T 11 HOH H 35 435 97 HOH HOH . T 11 HOH H 36 436 107 HOH HOH . T 11 HOH H 37 437 115 HOH HOH . T 11 HOH H 38 438 58 HOH HOH . T 11 HOH H 39 439 119 HOH HOH . T 11 HOH H 40 440 80 HOH HOH . T 11 HOH H 41 441 172 HOH HOH . T 11 HOH H 42 442 146 HOH HOH . T 11 HOH H 43 443 160 HOH HOH . T 11 HOH H 44 444 174 HOH HOH . T 11 HOH H 45 445 125 HOH HOH . T 11 HOH H 46 446 163 HOH HOH . T 11 HOH H 47 447 129 HOH HOH . T 11 HOH H 48 448 176 HOH HOH . T 11 HOH H 49 449 64 HOH HOH . T 11 HOH H 50 450 162 HOH HOH . T 11 HOH H 51 451 33 HOH HOH . T 11 HOH H 52 452 88 HOH HOH . T 11 HOH H 53 453 73 HOH HOH . T 11 HOH H 54 454 13 HOH HOH . T 11 HOH H 55 455 50 HOH HOH . T 11 HOH H 56 456 12 HOH HOH . T 11 HOH H 57 457 65 HOH HOH . T 11 HOH H 58 458 79 HOH HOH . T 11 HOH H 59 459 24 HOH HOH . T 11 HOH H 60 460 89 HOH HOH . T 11 HOH H 61 461 76 HOH HOH . T 11 HOH H 62 462 123 HOH HOH . T 11 HOH H 63 463 110 HOH HOH . T 11 HOH H 64 464 84 HOH HOH . T 11 HOH H 65 465 177 HOH HOH . T 11 HOH H 66 466 181 HOH HOH . T 11 HOH H 67 467 2 HOH HOH . T 11 HOH H 68 468 82 HOH HOH . T 11 HOH H 69 469 170 HOH HOH . T 11 HOH H 70 470 173 HOH HOH . T 11 HOH H 71 471 131 HOH HOH . T 11 HOH H 72 472 167 HOH HOH . T 11 HOH H 73 473 116 HOH HOH . T 11 HOH H 74 474 127 HOH HOH . T 11 HOH H 75 475 139 HOH HOH . T 11 HOH H 76 476 165 HOH HOH . T 11 HOH H 77 477 124 HOH HOH . T 11 HOH H 78 478 143 HOH HOH . T 11 HOH H 79 479 77 HOH HOH . T 11 HOH H 80 480 175 HOH HOH . T 11 HOH H 81 481 161 HOH HOH . T 11 HOH H 82 482 168 HOH HOH . U 11 HOH L 1 401 40 HOH HOH . U 11 HOH L 2 402 9 HOH HOH . U 11 HOH L 3 403 111 HOH HOH . U 11 HOH L 4 404 17 HOH HOH . U 11 HOH L 5 405 109 HOH HOH . U 11 HOH L 6 406 105 HOH HOH . U 11 HOH L 7 407 32 HOH HOH . U 11 HOH L 8 408 26 HOH HOH . U 11 HOH L 9 409 183 HOH HOH . U 11 HOH L 10 410 132 HOH HOH . U 11 HOH L 11 411 169 HOH HOH . U 11 HOH L 12 412 23 HOH HOH . U 11 HOH L 13 413 157 HOH HOH . U 11 HOH L 14 414 1 HOH HOH . U 11 HOH L 15 415 30 HOH HOH . U 11 HOH L 16 416 106 HOH HOH . U 11 HOH L 17 417 128 HOH HOH . U 11 HOH L 18 418 144 HOH HOH . U 11 HOH L 19 419 22 HOH HOH . U 11 HOH L 20 420 16 HOH HOH . U 11 HOH L 21 421 83 HOH HOH . U 11 HOH L 22 422 5 HOH HOH . U 11 HOH L 23 423 15 HOH HOH . U 11 HOH L 24 424 31 HOH HOH . U 11 HOH L 25 425 47 HOH HOH . U 11 HOH L 26 426 18 HOH HOH . U 11 HOH L 27 427 184 HOH HOH . U 11 HOH L 28 428 61 HOH HOH . U 11 HOH L 29 429 21 HOH HOH . U 11 HOH L 30 430 45 HOH HOH . U 11 HOH L 31 431 70 HOH HOH . U 11 HOH L 32 432 59 HOH HOH . U 11 HOH L 33 433 122 HOH HOH . U 11 HOH L 34 434 148 HOH HOH . U 11 HOH L 35 435 133 HOH HOH . U 11 HOH L 36 436 138 HOH HOH . U 11 HOH L 37 437 94 HOH HOH . U 11 HOH L 38 438 152 HOH HOH . U 11 HOH L 39 439 102 HOH HOH . U 11 HOH L 40 440 178 HOH HOH . U 11 HOH L 41 441 112 HOH HOH . U 11 HOH L 42 442 159 HOH HOH . U 11 HOH L 43 443 145 HOH HOH . U 11 HOH L 44 444 151 HOH HOH . U 11 HOH L 45 445 166 HOH HOH . V 11 HOH M 1 501 71 HOH HOH . V 11 HOH M 2 502 85 HOH HOH . V 11 HOH M 3 503 27 HOH HOH . V 11 HOH M 4 504 37 HOH HOH . V 11 HOH M 5 505 36 HOH HOH . V 11 HOH M 6 506 39 HOH HOH . V 11 HOH M 7 507 180 HOH HOH . V 11 HOH M 8 508 150 HOH HOH . V 11 HOH M 9 509 10 HOH HOH . V 11 HOH M 10 510 149 HOH HOH . V 11 HOH M 11 511 53 HOH HOH . V 11 HOH M 12 512 156 HOH HOH . V 11 HOH M 13 513 86 HOH HOH . V 11 HOH M 14 514 147 HOH HOH . V 11 HOH M 15 515 179 HOH HOH . V 11 HOH M 16 516 56 HOH HOH . V 11 HOH M 17 517 8 HOH HOH . V 11 HOH M 18 518 54 HOH HOH . V 11 HOH M 19 519 66 HOH HOH . V 11 HOH M 20 520 51 HOH HOH . V 11 HOH M 21 521 35 HOH HOH . V 11 HOH M 22 522 41 HOH HOH . V 11 HOH M 23 523 100 HOH HOH . V 11 HOH M 24 524 95 HOH HOH . V 11 HOH M 25 525 93 HOH HOH . V 11 HOH M 26 526 6 HOH HOH . V 11 HOH M 27 527 130 HOH HOH . V 11 HOH M 28 528 101 HOH HOH . V 11 HOH M 29 529 34 HOH HOH . V 11 HOH M 30 530 75 HOH HOH . V 11 HOH M 31 531 99 HOH HOH . V 11 HOH M 32 532 11 HOH HOH . V 11 HOH M 33 533 57 HOH HOH . V 11 HOH M 34 534 154 HOH HOH . V 11 HOH M 35 535 49 HOH HOH . V 11 HOH M 36 536 38 HOH HOH . V 11 HOH M 37 537 108 HOH HOH . V 11 HOH M 38 538 7 HOH HOH . V 11 HOH M 39 539 164 HOH HOH . V 11 HOH M 40 540 67 HOH HOH . V 11 HOH M 41 541 171 HOH HOH . V 11 HOH M 42 542 104 HOH HOH . V 11 HOH M 43 543 155 HOH HOH . V 11 HOH M 44 544 121 HOH HOH . V 11 HOH M 45 545 92 HOH HOH . V 11 HOH M 46 546 158 HOH HOH . V 11 HOH M 47 547 72 HOH HOH . V 11 HOH M 48 548 68 HOH HOH . V 11 HOH M 49 549 137 HOH HOH . V 11 HOH M 50 550 103 HOH HOH . V 11 HOH M 51 551 135 HOH HOH . V 11 HOH M 52 552 74 HOH HOH . V 11 HOH M 53 553 43 HOH HOH . V 11 HOH M 54 554 46 HOH HOH . V 11 HOH M 55 555 52 HOH HOH . V 11 HOH M 56 556 44 HOH HOH . V 11 HOH M 57 557 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . N 4 57.122 12.26 9.469 1 135.41 ? N1 LDA 407 M 1 HETATM 2 O O1 LDA . . . N 4 57.502 12.36 8.119 1 135.84 ? O1 LDA 407 M 1 HETATM 3 C CM1 LDA . . . N 4 58.239 12.766 10.322 1 133.28 ? CM1 LDA 407 M 1 HETATM 4 C CM2 LDA . . . N 4 55.902 13.094 9.666 1 133.13 ? CM2 LDA 407 M 1 HETATM 5 C C1 LDA . . . N 4 56.825 10.817 9.78 1 130.84 ? C1 LDA 407 M 1 HETATM 6 C C2 LDA . . . N 4 57.973 9.861 9.507 1 122.58 ? C2 LDA 407 M 1 HETATM 7 C C3 LDA . . . N 4 57.598 8.415 9.784 1 116.67 ? C3 LDA 407 M 1 HETATM 8 C C4 LDA . . . N 4 57.875 7.454 8.644 1 114.12 ? C4 LDA 407 M 1 HETATM 9 C C5 LDA . . . N 4 57.065 6.175 8.693 1 109.71 ? C5 LDA 407 M 1 HETATM 10 C C6 LDA . . . N 4 57.83 4.927 8.311 1 107.5 ? C6 LDA 407 M 1 HETATM 11 C C7 LDA . . . N 4 56.955 3.709 8.091 1 106.42 ? C7 LDA 407 M 1 HETATM 12 C C8 LDA . . . N 4 57.689 2.385 8.164 1 106.44 ? C8 LDA 407 M 1 HETATM 13 C C9 LDA . . . N 4 56.827 1.193 8.534 1 104.11 ? C9 LDA 407 M 1 HETATM 14 C C10 LDA . . . N 4 57.443 -0.152 8.183 1 108.23 ? C10 LDA 407 M 1 HETATM 15 C C11 LDA . . . N 4 56.759 -1.372 8.767 1 110.1 ? C11 LDA 407 M 1 HETATM 16 C C12 LDA . . . N 4 56.32 -2.406 7.748 1 104.31 ? C12 LDA 407 M 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #