data_7MH8 # _model_server_result.job_id RZKeI-PPRdwhGWODIsMxIg _model_server_result.datetime_utc '2024-11-13 07:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":404}' # _entry.id 7MH8 # _exptl.entry_id 7MH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MH8 _cell.length_a 140.96 _cell.length_b 140.96 _cell.length_c 187.01 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LEU 210 M LEU 209 1_555 C N ZDJ 211 M ZDJ 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 C C ZDJ 211 M ZDJ 210 1_555 C N GLY 212 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 B NE2 HIS 191 L HIS 190 1_555 O FE FE . M FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 B NE2 HIS 231 L HIS 230 1_555 O FE FE . M FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 C NE2 HIS 220 M HIS 219 1_555 O FE FE . M FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 C OE1 GLU 235 M GLU 234 1_555 O FE FE . M FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 C OE2 GLU 235 M GLU 234 1_555 O FE FE . M FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc6 C NE2 HIS 267 M HIS 266 1_555 O FE FE . M FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 722 n n N1 CM1 LDA sing 723 n n N1 CM2 LDA sing 724 n n N1 C1 LDA sing 725 n n CM1 HM11 LDA sing 726 n n CM1 HM12 LDA sing 727 n n CM1 HM13 LDA sing 728 n n CM2 HM21 LDA sing 729 n n CM2 HM22 LDA sing 730 n n CM2 HM23 LDA sing 731 n n C1 C2 LDA sing 732 n n C1 H11 LDA sing 733 n n C1 H12 LDA sing 734 n n C2 C3 LDA sing 735 n n C2 H21 LDA sing 736 n n C2 H22 LDA sing 737 n n C3 C4 LDA sing 738 n n C3 H31 LDA sing 739 n n C3 H32 LDA sing 740 n n C4 C5 LDA sing 741 n n C4 H41 LDA sing 742 n n C4 H42 LDA sing 743 n n C5 C6 LDA sing 744 n n C5 H51 LDA sing 745 n n C5 H52 LDA sing 746 n n C6 C7 LDA sing 747 n n C6 H61 LDA sing 748 n n C6 H62 LDA sing 749 n n C7 C8 LDA sing 750 n n C7 H71 LDA sing 751 n n C7 H72 LDA sing 752 n n C8 C9 LDA sing 753 n n C8 H81 LDA sing 754 n n C8 H82 LDA sing 755 n n C9 C10 LDA sing 756 n n C9 H91 LDA sing 757 n n C9 H92 LDA sing 758 n n C10 C11 LDA sing 759 n n C10 H101 LDA sing 760 n n C10 H102 LDA sing 761 n n C11 C12 LDA sing 762 n n C11 H111 LDA sing 763 n n C11 H112 LDA sing 764 n n C12 H121 LDA sing 765 n n C12 H122 LDA sing 766 n n C12 H123 LDA sing 767 n n # _atom_sites.entry_id 7MH8 _atom_sites.fract_transf_matrix[1][1] 0.007094 _atom_sites.fract_transf_matrix[1][2] 0.004096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 1251 LDA LDA . E 5 BCL L 1 301 1282 BCL BCL . F 6 BPH L 1 302 1286 BPH BPH . G 7 U10 L 1 303 1287 U10 U10 . H 5 BCL L 1 304 1288 BCL BCL . I 5 BCL L 1 305 1303 BCL BCL . J 5 BCL M 1 401 1304 BCL BCL . K 4 LDA M 1 402 1305 LDA LDA . L 4 LDA M 1 403 1306 LDA LDA . M 4 LDA M 1 404 1307 LDA LDA . N 4 LDA M 1 405 1308 LDA LDA . O 8 FE M 1 406 1309 FE FE . P 6 BPH M 1 407 1310 BPH BPH . Q 7 U10 M 1 408 1311 U10 U10 . R 9 SPO M 1 409 1312 SPO SPO . S 10 CDL M 1 410 1313 CDL CDL . T 11 HOH H 1 401 118 HOH HOH . T 11 HOH H 2 402 100 HOH HOH . T 11 HOH H 3 403 76 HOH HOH . T 11 HOH H 4 404 4 HOH HOH . T 11 HOH H 5 405 48 HOH HOH . T 11 HOH H 6 406 71 HOH HOH . T 11 HOH H 7 407 37 HOH HOH . T 11 HOH H 8 408 36 HOH HOH . T 11 HOH H 9 409 68 HOH HOH . T 11 HOH H 10 410 123 HOH HOH . T 11 HOH H 11 411 20 HOH HOH . T 11 HOH H 12 412 72 HOH HOH . T 11 HOH H 13 413 112 HOH HOH . T 11 HOH H 14 414 125 HOH HOH . T 11 HOH H 15 415 75 HOH HOH . T 11 HOH H 16 416 38 HOH HOH . T 11 HOH H 17 417 127 HOH HOH . T 11 HOH H 18 418 53 HOH HOH . T 11 HOH H 19 419 39 HOH HOH . T 11 HOH H 20 420 104 HOH HOH . T 11 HOH H 21 421 80 HOH HOH . T 11 HOH H 22 422 74 HOH HOH . T 11 HOH H 23 423 129 HOH HOH . T 11 HOH H 24 424 2 HOH HOH . T 11 HOH H 25 425 17 HOH HOH . T 11 HOH H 26 426 117 HOH HOH . T 11 HOH H 27 427 70 HOH HOH . T 11 HOH H 28 428 25 HOH HOH . T 11 HOH H 29 429 122 HOH HOH . T 11 HOH H 30 430 91 HOH HOH . T 11 HOH H 31 431 31 HOH HOH . T 11 HOH H 32 432 41 HOH HOH . T 11 HOH H 33 433 93 HOH HOH . T 11 HOH H 34 434 28 HOH HOH . T 11 HOH H 35 435 113 HOH HOH . T 11 HOH H 36 436 115 HOH HOH . T 11 HOH H 37 437 94 HOH HOH . T 11 HOH H 38 438 58 HOH HOH . T 11 HOH H 39 439 16 HOH HOH . T 11 HOH H 40 440 78 HOH HOH . T 11 HOH H 41 441 73 HOH HOH . T 11 HOH H 42 442 86 HOH HOH . T 11 HOH H 43 443 54 HOH HOH . T 11 HOH H 44 444 67 HOH HOH . T 11 HOH H 45 445 62 HOH HOH . T 11 HOH H 46 446 105 HOH HOH . T 11 HOH H 47 447 132 HOH HOH . T 11 HOH H 48 448 46 HOH HOH . T 11 HOH H 49 449 82 HOH HOH . T 11 HOH H 50 450 119 HOH HOH . T 11 HOH H 51 451 107 HOH HOH . T 11 HOH H 52 452 106 HOH HOH . T 11 HOH H 53 453 111 HOH HOH . T 11 HOH H 54 454 116 HOH HOH . T 11 HOH H 55 455 97 HOH HOH . T 11 HOH H 56 456 5 HOH HOH . T 11 HOH H 57 457 45 HOH HOH . T 11 HOH H 58 458 81 HOH HOH . U 11 HOH L 1 401 29 HOH HOH . U 11 HOH L 2 402 14 HOH HOH . U 11 HOH L 3 403 7 HOH HOH . U 11 HOH L 4 404 84 HOH HOH . U 11 HOH L 5 405 50 HOH HOH . U 11 HOH L 6 406 10 HOH HOH . U 11 HOH L 7 407 21 HOH HOH . U 11 HOH L 8 408 13 HOH HOH . U 11 HOH L 9 409 96 HOH HOH . U 11 HOH L 10 410 126 HOH HOH . U 11 HOH L 11 411 35 HOH HOH . U 11 HOH L 12 412 22 HOH HOH . U 11 HOH L 13 413 83 HOH HOH . U 11 HOH L 14 414 52 HOH HOH . U 11 HOH L 15 415 30 HOH HOH . U 11 HOH L 16 416 88 HOH HOH . U 11 HOH L 17 417 3 HOH HOH . U 11 HOH L 18 418 12 HOH HOH . U 11 HOH L 19 419 15 HOH HOH . U 11 HOH L 20 420 19 HOH HOH . U 11 HOH L 21 421 110 HOH HOH . U 11 HOH L 22 422 102 HOH HOH . U 11 HOH L 23 423 121 HOH HOH . U 11 HOH L 24 424 130 HOH HOH . U 11 HOH L 25 425 128 HOH HOH . U 11 HOH L 26 426 103 HOH HOH . U 11 HOH L 27 427 34 HOH HOH . U 11 HOH L 28 428 114 HOH HOH . U 11 HOH L 29 429 89 HOH HOH . U 11 HOH L 30 430 9 HOH HOH . U 11 HOH L 31 431 109 HOH HOH . V 11 HOH M 1 501 85 HOH HOH . V 11 HOH M 2 502 55 HOH HOH . V 11 HOH M 3 503 26 HOH HOH . V 11 HOH M 4 504 77 HOH HOH . V 11 HOH M 5 505 99 HOH HOH . V 11 HOH M 6 506 43 HOH HOH . V 11 HOH M 7 507 8 HOH HOH . V 11 HOH M 8 508 33 HOH HOH . V 11 HOH M 9 509 56 HOH HOH . V 11 HOH M 10 510 120 HOH HOH . V 11 HOH M 11 511 40 HOH HOH . V 11 HOH M 12 512 101 HOH HOH . V 11 HOH M 13 513 47 HOH HOH . V 11 HOH M 14 514 87 HOH HOH . V 11 HOH M 15 515 32 HOH HOH . V 11 HOH M 16 516 6 HOH HOH . V 11 HOH M 17 517 24 HOH HOH . V 11 HOH M 18 518 60 HOH HOH . V 11 HOH M 19 519 23 HOH HOH . V 11 HOH M 20 520 95 HOH HOH . V 11 HOH M 21 521 1 HOH HOH . V 11 HOH M 22 522 42 HOH HOH . V 11 HOH M 23 523 11 HOH HOH . V 11 HOH M 24 524 18 HOH HOH . V 11 HOH M 25 525 131 HOH HOH . V 11 HOH M 26 526 69 HOH HOH . V 11 HOH M 27 527 92 HOH HOH . V 11 HOH M 28 528 66 HOH HOH . V 11 HOH M 29 529 49 HOH HOH . V 11 HOH M 30 530 90 HOH HOH . V 11 HOH M 31 531 98 HOH HOH . V 11 HOH M 32 532 124 HOH HOH . V 11 HOH M 33 533 79 HOH HOH . V 11 HOH M 34 534 59 HOH HOH . V 11 HOH M 35 535 51 HOH HOH . V 11 HOH M 36 536 61 HOH HOH . V 11 HOH M 37 537 63 HOH HOH . V 11 HOH M 38 538 27 HOH HOH . V 11 HOH M 39 539 108 HOH HOH . V 11 HOH M 40 540 44 HOH HOH . V 11 HOH M 41 541 57 HOH HOH . V 11 HOH M 42 542 64 HOH HOH . V 11 HOH M 43 543 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . M 4 -2.265 -69.441 -6.854 1 113.89 ? N1 LDA 404 M 1 HETATM 2 O O1 LDA . . . M 4 -3.644 -69.642 -7.045 1 116.55 ? O1 LDA 404 M 1 HETATM 3 C CM1 LDA . . . M 4 -2.069 -68.786 -5.527 1 114.88 ? CM1 LDA 404 M 1 HETATM 4 C CM2 LDA . . . M 4 -1.588 -70.769 -6.868 1 112.05 ? CM2 LDA 404 M 1 HETATM 5 C C1 LDA . . . M 4 -1.747 -68.553 -7.957 1 107.95 ? C1 LDA 404 M 1 HETATM 6 C C2 LDA . . . M 4 -2.051 -69.03 -9.368 1 100.97 ? C2 LDA 404 M 1 HETATM 7 C C3 LDA . . . M 4 -2.19 -67.89 -10.367 1 98.3 ? C3 LDA 404 M 1 HETATM 8 C C4 LDA . . . M 4 -1.243 -67.953 -11.546 1 100.52 ? C4 LDA 404 M 1 HETATM 9 C C5 LDA . . . M 4 -1.032 -66.624 -12.24 1 103.45 ? C5 LDA 404 M 1 HETATM 10 C C6 LDA . . . M 4 -0.294 -66.703 -13.563 1 107.28 ? C6 LDA 404 M 1 HETATM 11 C C7 LDA . . . M 4 0.596 -65.509 -13.851 1 111.36 ? C7 LDA 404 M 1 HETATM 12 C C8 LDA . . . M 4 1.069 -65.393 -15.287 1 112.28 ? C8 LDA 404 M 1 HETATM 13 C C9 LDA . . . M 4 1.841 -64.123 -15.587 1 112.73 ? C9 LDA 404 M 1 HETATM 14 C C10 LDA . . . M 4 2.361 -64.021 -17.007 1 113.72 ? C10 LDA 404 M 1 HETATM 15 C C11 LDA . . . M 4 2.568 -62.613 -17.52 1 115.89 ? C11 LDA 404 M 1 HETATM 16 C C12 LDA . . . M 4 3.981 -62.097 -17.359 1 115.5 ? C12 LDA 404 M 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #