data_7MHC # _model_server_result.job_id 70UAxy5hluRxj2cQl-Lh-g _model_server_result.datetime_utc '2024-10-19 03:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mhc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7MHC # _exptl.entry_id 7MHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 708.509 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (2R,5R,7R,8S,10R,12aR,14R,15S,15aR,16R)-7-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-15,16-difluoro-2,10-bis(sulfanyl)octahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.97 _cell.angle_gamma 90 _cell.entry_id 7MHC _cell.length_a 88.12 _cell.length_b 72.74 _cell.length_c 36.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_654 -x+1,y,-z-1 -1 0 0 0 1 0 0 0 -1 95.041029 0 -35.705409 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 F2 N10 O9 P2 S2 -2' _chem_comp.formula_weight 708.509 _chem_comp.id ZEV _chem_comp.mon_nstd_flag . _chem_comp.name (2R,5R,7R,8S,10R,12aR,14R,15S,15aR,16R)-7-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-15,16-difluoro-2,10-bis(sulfanyl)octahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 P1 ZEV doub 376 n n O7 P1 ZEV sing 377 n n P1 O3 ZEV sing 378 n n P1 O4 ZEV sing 379 n n O3 C10 ZEV sing 380 n n C10 C9 ZEV sing 381 n n O2 C9 ZEV sing 382 n n O2 C3 ZEV sing 383 n n O4 C11 ZEV sing 384 n n C6 N1 ZEV doub 385 n y C6 N ZEV sing 386 n y N1 C5 ZEV sing 387 n y N9 C19 ZEV sing 388 n n C9 C1 ZEV sing 389 n n N C3 ZEV sing 390 n n N C4 ZEV sing 391 n y C3 C2 ZEV sing 392 n n C5 C4 ZEV doub 393 n y C5 C7 ZEV sing 394 n y C19 N8 ZEV doub 395 n n C19 N7 ZEV sing 396 n n N4 C7 ZEV sing 397 n n N8 C15 ZEV sing 398 n n C4 N3 ZEV sing 399 n y F C12 ZEV sing 400 n n N7 C18 ZEV sing 401 n n C7 N2 ZEV doub 402 n y C11 C12 ZEV sing 403 n n C11 C14 ZEV sing 404 n n C1 C2 ZEV sing 405 n n C1 O1 ZEV sing 406 n n C15 C16 ZEV doub 407 n y C15 N5 ZEV sing 408 n y N3 C8 ZEV doub 409 n y C12 C13 ZEV sing 410 n n C18 O6 ZEV doub 411 n n C18 C16 ZEV sing 412 n n N2 C8 ZEV sing 413 n y C14 N5 ZEV sing 414 n n C14 O5 ZEV sing 415 n n C2 F1 ZEV sing 416 n n C16 N6 ZEV sing 417 n y N5 C17 ZEV sing 418 n y O1 P ZEV sing 419 n n C17 N6 ZEV doub 420 n y O5 C13 ZEV sing 421 n n C13 C ZEV sing 422 n n O P ZEV sing 423 n n O C ZEV sing 424 n n O8 P ZEV sing 425 n n P S ZEV doub 426 n n C6 H11 ZEV sing 427 n n C8 H12 ZEV sing 428 n n C10 H15 ZEV sing 429 n n C10 H16 ZEV sing 430 n n C13 H6 ZEV sing 431 n n C17 H17 ZEV sing 432 n n C1 H ZEV sing 433 n n C9 H3 ZEV sing 434 n n C3 H2 ZEV sing 435 n n N4 H13 ZEV sing 436 n n N4 H14 ZEV sing 437 n n C2 H1 ZEV sing 438 n n C11 H4 ZEV sing 439 n n C14 H7 ZEV sing 440 n n C12 H5 ZEV sing 441 n n C H9 ZEV sing 442 n n C H10 ZEV sing 443 n n N7 H8 ZEV sing 444 n n N9 H19 ZEV sing 445 n n N9 H18 ZEV sing 446 n n # _atom_sites.entry_id 7MHC _atom_sites.fract_transf_matrix[1][1] 0.011348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0022 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZEV A 1 401 1 ZEV LIG . C 3 HOH A 1 501 7 HOH HOH . C 3 HOH A 2 502 4 HOH HOH . C 3 HOH A 3 503 13 HOH HOH . C 3 HOH A 4 504 11 HOH HOH . C 3 HOH A 5 505 1 HOH HOH . C 3 HOH A 6 506 14 HOH HOH . C 3 HOH A 7 507 5 HOH HOH . C 3 HOH A 8 508 10 HOH HOH . C 3 HOH A 9 509 22 HOH HOH . C 3 HOH A 10 510 21 HOH HOH . C 3 HOH A 11 511 15 HOH HOH . C 3 HOH A 12 512 3 HOH HOH . C 3 HOH A 13 513 16 HOH HOH . C 3 HOH A 14 514 9 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 8 HOH HOH . C 3 HOH A 17 517 28 HOH HOH . C 3 HOH A 18 518 6 HOH HOH . C 3 HOH A 19 519 12 HOH HOH . C 3 HOH A 20 520 2 HOH HOH . C 3 HOH A 21 521 23 HOH HOH . C 3 HOH A 22 522 20 HOH HOH . C 3 HOH A 23 523 18 HOH HOH . C 3 HOH A 24 524 27 HOH HOH . C 3 HOH A 25 525 24 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 19 HOH HOH . C 3 HOH A 28 528 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZEV . . . B 2 49.581 7.259 -19.236 0.5 42.71 ? N1 ZEV 401 A 1 HETATM 2 N N3 ZEV . . . B 2 52.588 6.489 -17.473 0.5 48.98 ? N3 ZEV 401 A 1 HETATM 3 C C4 ZEV . . . B 2 51.477 6.515 -18.215 0.5 46.24 ? C4 ZEV 401 A 1 HETATM 4 C C5 ZEV . . . B 2 50.72 7.626 -18.538 0.5 43.48 ? C5 ZEV 401 A 1 HETATM 5 C C6 ZEV . . . B 2 49.687 5.955 -19.337 0.5 42.74 ? C6 ZEV 401 A 1 HETATM 6 C C7 ZEV . . . B 2 51.201 8.873 -18.084 0.5 45.61 ? C7 ZEV 401 A 1 HETATM 7 C C8 ZEV . . . B 2 52.929 7.717 -17.078 0.5 48.26 ? C8 ZEV 401 A 1 HETATM 8 C C10 ZEV . . . B 2 48.399 2.23 -19.804 0.5 43.47 ? C10 ZEV 401 A 1 HETATM 9 C C13 ZEV . . . B 2 45.073 2.01 -16.028 0.5 47.23 ? C13 ZEV 401 A 1 HETATM 10 C C15 ZEV . . . B 2 43.991 6.329 -17.54 0.5 39.72 ? C15 ZEV 401 A 1 HETATM 11 C C17 ZEV . . . B 2 45.871 5.897 -16.508 0.5 36.33 ? C17 ZEV 401 A 1 HETATM 12 O O8 ZEV . . . B 2 48.988 4.774 -15.446 0.5 46.12 ? O8 ZEV 401 A 1 HETATM 13 P P ZEV . . . B 2 48.502 3.364 -15.254 0.5 54.48 ? P ZEV 401 A 1 HETATM 14 O O ZEV . . . B 2 46.958 3.351 -15.497 0.5 52.52 ? O ZEV 401 A 1 HETATM 15 S S ZEV . . . B 2 49.124 2.465 -13.662 0.5 56.51 ? S ZEV 401 A 1 HETATM 16 O O1 ZEV . . . B 2 48.773 2.529 -16.551 0.5 52.93 ? O1 ZEV 401 A 1 HETATM 17 C C1 ZEV . . . B 2 49.331 3.221 -17.677 0.5 49.11 ? C1 ZEV 401 A 1 HETATM 18 C C9 ZEV . . . B 2 49.605 2.417 -18.929 0.5 46.35 ? C9 ZEV 401 A 1 HETATM 19 O O2 ZEV . . . B 2 50.571 3.256 -19.603 0.5 48.13 ? O2 ZEV 401 A 1 HETATM 20 C C3 ZEV . . . B 2 51.238 4.052 -18.635 0.5 47.3 ? C3 ZEV 401 A 1 HETATM 21 N N ZEV . . . B 2 50.818 5.442 -18.76 0.5 45.24 ? N ZEV 401 A 1 HETATM 22 N N2 ZEV . . . B 2 52.331 8.877 -17.344 0.5 46.53 ? N2 ZEV 401 A 1 HETATM 23 N N4 ZEV . . . B 2 50.611 10.045 -18.346 0.5 45.27 ? N4 ZEV 401 A 1 HETATM 24 C C2 ZEV . . . B 2 50.749 3.555 -17.28 0.5 50.86 ? C2 ZEV 401 A 1 HETATM 25 F F1 ZEV . . . B 2 50.745 4.645 -16.397 0.5 52.5 ? F1 ZEV 401 A 1 HETATM 26 O O3 ZEV . . . B 2 47.703 3.497 -19.807 0.5 45.21 ? O3 ZEV 401 A 1 HETATM 27 P P1 ZEV . . . B 2 46.358 3.646 -20.6 0.5 49.21 ? P1 ZEV 401 A 1 HETATM 28 S S1 ZEV . . . B 2 46.263 2.579 -22.186 0.5 51.98 ? S1 ZEV 401 A 1 HETATM 29 O O7 ZEV . . . B 2 46.042 5.078 -20.821 0.5 49.12 ? O7 ZEV 401 A 1 HETATM 30 O O4 ZEV . . . B 2 45.426 3.111 -19.46 0.5 42.92 ? O4 ZEV 401 A 1 HETATM 31 C C11 ZEV . . . B 2 45.572 3.097 -18.028 0.5 42.38 ? C11 ZEV 401 A 1 HETATM 32 C C14 ZEV . . . B 2 44.487 3.88 -17.302 0.5 41.52 ? C14 ZEV 401 A 1 HETATM 33 O O5 ZEV . . . B 2 44.342 3.258 -16.04 0.5 45.58 ? O5 ZEV 401 A 1 HETATM 34 C C12 ZEV . . . B 2 45.399 1.708 -17.468 0.5 45.94 ? C12 ZEV 401 A 1 HETATM 35 F F ZEV . . . B 2 44.423 1.026 -18.212 0.5 46.31 ? F ZEV 401 A 1 HETATM 36 C C ZEV . . . B 2 46.271 2.149 -15.135 0.5 50.06 ? C ZEV 401 A 1 HETATM 37 N N5 ZEV . . . B 2 44.79 5.305 -17.113 0.5 38.25 ? N5 ZEV 401 A 1 HETATM 38 N N6 ZEV . . . B 2 45.808 7.207 -16.505 0.5 38.12 ? N6 ZEV 401 A 1 HETATM 39 C C16 ZEV . . . B 2 44.613 7.494 -17.142 0.5 37.82 ? C16 ZEV 401 A 1 HETATM 40 C C18 ZEV . . . B 2 43.978 8.741 -17.446 0.5 39.54 ? C18 ZEV 401 A 1 HETATM 41 O O6 ZEV . . . B 2 44.377 9.875 -17.163 0.5 40.88 ? O6 ZEV 401 A 1 HETATM 42 N N7 ZEV . . . B 2 42.794 8.565 -18.136 0.5 38.56 ? N7 ZEV 401 A 1 HETATM 43 C C19 ZEV . . . B 2 42.265 7.356 -18.504 0.5 41.1 ? C19 ZEV 401 A 1 HETATM 44 N N9 ZEV . . . B 2 41.082 7.37 -19.118 0.5 41.49 ? N9 ZEV 401 A 1 HETATM 45 N N8 ZEV . . . B 2 42.846 6.191 -18.229 0.5 42.18 ? N8 ZEV 401 A 1 HETATM 46 H H11 ZEV . . . B 2 48.931 5.325 -19.806 0.5 41.99 ? H11 ZEV 401 A 1 HETATM 47 H H12 ZEV . . . B 2 53.824 7.772 -16.459 0.5 49.81 ? H12 ZEV 401 A 1 HETATM 48 H H15 ZEV . . . B 2 48.669 1.964 -20.824 0.5 43.58 ? H15 ZEV 401 A 1 HETATM 49 H H16 ZEV . . . B 2 47.743 1.45 -19.416 0.5 42.14 ? H16 ZEV 401 A 1 HETATM 50 H H6 ZEV . . . B 2 44.385 1.274 -15.627 0.5 46.95 ? H6 ZEV 401 A 1 HETATM 51 H H17 ZEV . . . B 2 46.688 5.321 -16.073 0.5 36.35 ? H17 ZEV 401 A 1 HETATM 52 H H ZEV . . . B 2 48.718 4.097 -17.884 0.5 49.2 ? H ZEV 401 A 1 HETATM 53 H H3 ZEV . . . B 2 50.065 1.448 -18.735 0.5 46.79 ? H3 ZEV 401 A 1 HETATM 54 H H2 ZEV . . . B 2 52.317 3.999 -18.755 0.5 47.67 ? H2 ZEV 401 A 1 HETATM 55 H H13 ZEV . . . B 2 49.757 10.069 -18.893 0.5 44.69 ? H13 ZEV 401 A 1 HETATM 56 H H14 ZEV . . . B 2 50.999 10.92 -18.012 0.5 44.77 ? H14 ZEV 401 A 1 HETATM 57 H H1 ZEV . . . B 2 51.32 2.736 -16.845 0.5 51.45 ? H1 ZEV 401 A 1 HETATM 58 H H4 ZEV . . . B 2 46.574 3.498 -17.879 0.5 42.6 ? H4 ZEV 401 A 1 HETATM 59 H H7 ZEV . . . B 2 43.518 3.857 -17.8 0.5 41.12 ? H7 ZEV 401 A 1 HETATM 60 H H5 ZEV . . . B 2 46.304 1.111 -17.561 0.5 46.07 ? H5 ZEV 401 A 1 HETATM 61 H H9 ZEV . . . B 2 46.921 1.281 -15.214 0.5 50.02 ? H9 ZEV 401 A 1 HETATM 62 H H10 ZEV . . . B 2 46.022 2.286 -14.086 0.5 50.32 ? H10 ZEV 401 A 1 HETATM 63 H H8 ZEV . . . B 2 42.311 9.423 -18.379 0.5 38.75 ? H8 ZEV 401 A 1 HETATM 64 H H19 ZEV . . . B 2 40.628 6.497 -19.365 0.5 40.34 ? H19 ZEV 401 A 1 HETATM 65 H H18 ZEV . . . B 2 40.575 8.223 -19.335 0.5 42.21 ? H18 ZEV 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #