data_7MHI # _model_server_result.job_id i8a1PTGN4XK60GA-2YrX1g _model_server_result.datetime_utc '2025-01-28 03:07:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7MHI # _exptl.entry_id 7MHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.67 _cell.angle_gamma 90 _cell.entry_id 7MHI _cell.length_a 114.968 _cell.length_b 54.622 _cell.length_c 45.194 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A SG CYS 145 A CYS 145 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7MHI _atom_sites.fract_transf_matrix[1][1] 0.008698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 403 DMS DMS . C 2 DMS A 1 402 405 DMS DMS . D 3 ZN A 1 403 1 ZN ZN . E 4 HOH A 1 501 78 HOH HOH . E 4 HOH A 2 502 42 HOH HOH . E 4 HOH A 3 503 31 HOH HOH . E 4 HOH A 4 504 38 HOH HOH . E 4 HOH A 5 505 34 HOH HOH . E 4 HOH A 6 506 32 HOH HOH . E 4 HOH A 7 507 28 HOH HOH . E 4 HOH A 8 508 25 HOH HOH . E 4 HOH A 9 509 50 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 80 HOH HOH . E 4 HOH A 12 512 63 HOH HOH . E 4 HOH A 13 513 106 HOH HOH . E 4 HOH A 14 514 53 HOH HOH . E 4 HOH A 15 515 103 HOH HOH . E 4 HOH A 16 516 21 HOH HOH . E 4 HOH A 17 517 141 HOH HOH . E 4 HOH A 18 518 3 HOH HOH . E 4 HOH A 19 519 111 HOH HOH . E 4 HOH A 20 520 20 HOH HOH . E 4 HOH A 21 521 6 HOH HOH . E 4 HOH A 22 522 13 HOH HOH . E 4 HOH A 23 523 44 HOH HOH . E 4 HOH A 24 524 68 HOH HOH . E 4 HOH A 25 525 58 HOH HOH . E 4 HOH A 26 526 93 HOH HOH . E 4 HOH A 27 527 11 HOH HOH . E 4 HOH A 28 528 67 HOH HOH . E 4 HOH A 29 529 51 HOH HOH . E 4 HOH A 30 530 8 HOH HOH . E 4 HOH A 31 531 2 HOH HOH . E 4 HOH A 32 532 40 HOH HOH . E 4 HOH A 33 533 104 HOH HOH . E 4 HOH A 34 534 82 HOH HOH . E 4 HOH A 35 535 37 HOH HOH . E 4 HOH A 36 536 29 HOH HOH . E 4 HOH A 37 537 48 HOH HOH . E 4 HOH A 38 538 9 HOH HOH . E 4 HOH A 39 539 101 HOH HOH . E 4 HOH A 40 540 4 HOH HOH . E 4 HOH A 41 541 14 HOH HOH . E 4 HOH A 42 542 26 HOH HOH . E 4 HOH A 43 543 97 HOH HOH . E 4 HOH A 44 544 59 HOH HOH . E 4 HOH A 45 545 85 HOH HOH . E 4 HOH A 46 546 72 HOH HOH . E 4 HOH A 47 547 96 HOH HOH . E 4 HOH A 48 548 39 HOH HOH . E 4 HOH A 49 549 12 HOH HOH . E 4 HOH A 50 550 43 HOH HOH . E 4 HOH A 51 551 18 HOH HOH . E 4 HOH A 52 552 65 HOH HOH . E 4 HOH A 53 553 7 HOH HOH . E 4 HOH A 54 554 126 HOH HOH . E 4 HOH A 55 555 46 HOH HOH . E 4 HOH A 56 556 55 HOH HOH . E 4 HOH A 57 557 90 HOH HOH . E 4 HOH A 58 558 5 HOH HOH . E 4 HOH A 59 559 17 HOH HOH . E 4 HOH A 60 560 83 HOH HOH . E 4 HOH A 61 561 56 HOH HOH . E 4 HOH A 62 562 24 HOH HOH . E 4 HOH A 63 563 115 HOH HOH . E 4 HOH A 64 564 54 HOH HOH . E 4 HOH A 65 565 16 HOH HOH . E 4 HOH A 66 566 75 HOH HOH . E 4 HOH A 67 567 109 HOH HOH . E 4 HOH A 68 568 116 HOH HOH . E 4 HOH A 69 569 112 HOH HOH . E 4 HOH A 70 570 22 HOH HOH . E 4 HOH A 71 571 73 HOH HOH . E 4 HOH A 72 572 69 HOH HOH . E 4 HOH A 73 573 15 HOH HOH . E 4 HOH A 74 574 19 HOH HOH . E 4 HOH A 75 575 102 HOH HOH . E 4 HOH A 76 576 30 HOH HOH . E 4 HOH A 77 577 23 HOH HOH . E 4 HOH A 78 578 79 HOH HOH . E 4 HOH A 79 579 135 HOH HOH . E 4 HOH A 80 580 57 HOH HOH . E 4 HOH A 81 581 35 HOH HOH . E 4 HOH A 82 582 89 HOH HOH . E 4 HOH A 83 583 77 HOH HOH . E 4 HOH A 84 584 60 HOH HOH . E 4 HOH A 85 585 130 HOH HOH . E 4 HOH A 86 586 49 HOH HOH . E 4 HOH A 87 587 134 HOH HOH . E 4 HOH A 88 588 133 HOH HOH . E 4 HOH A 89 589 142 HOH HOH . E 4 HOH A 90 590 81 HOH HOH . E 4 HOH A 91 591 125 HOH HOH . E 4 HOH A 92 592 92 HOH HOH . E 4 HOH A 93 593 98 HOH HOH . E 4 HOH A 94 594 122 HOH HOH . E 4 HOH A 95 595 118 HOH HOH . E 4 HOH A 96 596 76 HOH HOH . E 4 HOH A 97 597 88 HOH HOH . E 4 HOH A 98 598 113 HOH HOH . E 4 HOH A 99 599 62 HOH HOH . E 4 HOH A 100 600 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 5.993 -1.084 -6.626 0.69 50.48 ? S DMS 401 A 1 HETATM 2 O O DMS . . . B 2 7.148 -0.844 -7.557 0.69 48.07 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . B 2 6.594 -1.055 -4.906 0.69 37.55 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . B 2 5.4 -2.794 -6.752 0.69 40.38 ? C2 DMS 401 A 1 HETATM 5 H H11 DMS . . . B 2 5.825 -1.388 -4.258 0.69 45.32 ? H11 DMS 401 A 1 HETATM 6 H H12 DMS . . . B 2 6.872 -0.068 -4.645 0.69 45.32 ? H12 DMS 401 A 1 HETATM 7 H H13 DMS . . . B 2 7.433 -1.694 -4.815 0.69 45.32 ? H13 DMS 401 A 1 HETATM 8 H H21 DMS . . . B 2 4.583 -2.934 -6.093 0.69 48.71 ? H21 DMS 401 A 1 HETATM 9 H H22 DMS . . . B 2 6.181 -3.459 -6.491 0.69 48.71 ? H22 DMS 401 A 1 HETATM 10 H H23 DMS . . . B 2 5.088 -2.987 -7.745 0.69 48.71 ? H23 DMS 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #