data_7MI6 # _model_server_result.job_id XGLyzFYCcQQFj59ox1gdHA _model_server_result.datetime_utc '2024-10-16 23:35:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4203}' # _entry.id 7MI6 # _exptl.entry_id 7MI6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MI6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 719 A THR 2081 1_555 E MG MG . A MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 A OE2 GLU 833 A GLU 2195 1_555 E MG MG . A MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc3 D O3G ATP . A ATP 4203 1_555 E MG MG . A MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc4 D O1B ATP . A ATP 4203 1_555 E MG MG . A MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7MI6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZG7 A 1 4201 3701 ZG7 LIG . C 2 ZG7 A 1 4202 3601 ZG7 LIG . D 3 ATP A 1 4203 2601 ATP ATP . E 4 MG A 1 4204 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 83.369 125.962 84.809 1 154.53 ? PG ATP 4203 A 1 HETATM 2 O O1G ATP . . . D 3 82.998 125.332 83.509 1 154.53 ? O1G ATP 4203 A 1 HETATM 3 O O2G ATP . . . D 3 83.058 125.091 85.987 1 154.53 ? O2G ATP 4203 A 1 HETATM 4 O O3G ATP . . . D 3 84.723 126.608 84.857 1 154.53 ? O3G ATP 4203 A 1 HETATM 5 P PB ATP . . . D 3 82.35 128.608 85.332 1 154.53 ? PB ATP 4203 A 1 HETATM 6 O O1B ATP . . . D 3 83.725 128.96 85.839 1 154.53 ? O1B ATP 4203 A 1 HETATM 7 O O2B ATP . . . D 3 81.138 128.847 86.173 1 154.53 ? O2B ATP 4203 A 1 HETATM 8 O O3B ATP . . . D 3 82.229 127.075 84.88 1 154.53 ? O3B ATP 4203 A 1 HETATM 9 P PA ATP . . . D 3 82.203 130.987 83.893 1 154.53 ? PA ATP 4203 A 1 HETATM 10 O O1A ATP . . . D 3 82.919 131.401 82.642 1 154.53 ? O1A ATP 4203 A 1 HETATM 11 O O2A ATP . . . D 3 82.719 131.483 85.213 1 154.53 ? O2A ATP 4203 A 1 HETATM 12 O O3A ATP . . . D 3 82.115 129.387 83.961 1 154.53 ? O3A ATP 4203 A 1 HETATM 13 O O5' ATP . . . D 3 80.642 131.338 83.694 1 154.53 ? O5' ATP 4203 A 1 HETATM 14 C C5' ATP . . . D 3 80.031 131.157 82.42 1 154.53 ? C5' ATP 4203 A 1 HETATM 15 C C4' ATP . . . D 3 79.6 132.407 81.659 1 154.53 ? C4' ATP 4203 A 1 HETATM 16 O O4' ATP . . . D 3 78.51 133.066 82.305 1 154.53 ? O4' ATP 4203 A 1 HETATM 17 C C3' ATP . . . D 3 80.646 133.484 81.506 1 154.53 ? C3' ATP 4203 A 1 HETATM 18 O O3' ATP . . . D 3 81.5 133.193 80.414 1 154.53 ? O3' ATP 4203 A 1 HETATM 19 C C2' ATP . . . D 3 79.814 134.715 81.228 1 154.53 ? C2' ATP 4203 A 1 HETATM 20 O O2' ATP . . . D 3 79.521 134.838 79.841 1 154.53 ? O2' ATP 4203 A 1 HETATM 21 C C1' ATP . . . D 3 78.521 134.455 81.957 1 154.53 ? C1' ATP 4203 A 1 HETATM 22 N N9 ATP . . . D 3 78.525 135.309 83.157 1 154.53 ? N9 ATP 4203 A 1 HETATM 23 C C8 ATP . . . D 3 79.124 134.976 84.307 1 154.53 ? C8 ATP 4203 A 1 HETATM 24 N N7 ATP . . . D 3 78.997 135.949 85.23 1 154.53 ? N7 ATP 4203 A 1 HETATM 25 C C5 ATP . . . D 3 78.313 136.933 84.651 1 154.53 ? C5 ATP 4203 A 1 HETATM 26 C C6 ATP . . . D 3 77.837 138.236 85.096 1 154.53 ? C6 ATP 4203 A 1 HETATM 27 N N6 ATP . . . D 3 78.113 138.601 86.366 1 154.53 ? N6 ATP 4203 A 1 HETATM 28 N N1 ATP . . . D 3 77.162 139.014 84.222 1 154.53 ? N1 ATP 4203 A 1 HETATM 29 C C2 ATP . . . D 3 76.91 138.587 82.973 1 154.53 ? C2 ATP 4203 A 1 HETATM 30 N N3 ATP . . . D 3 77.309 137.39 82.504 1 154.53 ? N3 ATP 4203 A 1 HETATM 31 C C4 ATP . . . D 3 78.012 136.532 83.281 1 154.53 ? C4 ATP 4203 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #