data_7MIP
#
_model_server_result.job_id            Xt0zdguNNJvATXi9Kss5Sg 
_model_server_result.datetime_utc      '2024-10-18 15:22:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mip 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":604}' 
#
_entry.id    7MIP 
#
_exptl.entry_id    7MIP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MIP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MIP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
? 4 O N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 218 C CYS 218 1_555 A SG CYS 243 C CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 B SG CYS 218 D CYS 218 1_555 B SG CYS 243 D CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 C SG CYS 218 G CYS 218 1_555 C SG CYS 243 G CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 D SG CYS 218 I CYS 218 1_555 D SG CYS 243 I CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 F MG MG . C MG 602 1_555 G O2A UTP . C UTP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc2 F MG MG . C MG 602 1_555 G O1G UTP . C UTP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc3 F MG MG . C MG 602 1_555 G O2B UTP . C UTP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc4 K MG MG . D MG 603 1_555 L O1A UTP . D UTP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc5 K MG MG . D MG 603 1_555 L O1G UTP . D UTP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc6 K MG MG . D MG 603 1_555 L O1B UTP . D UTP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc7 N MG MG . G MG 602 1_555 O O1A UTP . G UTP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc8 N MG MG . G MG 602 1_555 O O1B UTP . G UTP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc9 N MG MG . G MG 602 1_555 O O1G UTP . G UTP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc10 S MG MG . I MG 603 1_555 T O2A UTP . I UTP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc11 S MG MG . I MG 603 1_555 T O2B UTP . I UTP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc12 S MG MG . I MG 603 1_555 T O1G UTP . I UTP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7MIP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GLN C 1 601 611 GLN GLN . 
F 3 MG C 1 602 1 MG MG . 
G 4 UTP C 1 603 603 UTP UTP . 
H 5 ZG4 C 1 604 1001 ZG4 LIG . 
I 2 GLN D 1 601 611 GLN GLN . 
J 5 ZG4 D 1 602 1000 ZG4 LIG . 
K 3 MG D 1 603 1 MG MG . 
L 4 UTP D 1 604 603 UTP UTP . 
M 2 GLN G 1 601 611 GLN GLN . 
N 3 MG G 1 602 1 MG MG . 
O 4 UTP G 1 603 603 UTP UTP . 
P 5 ZG4 G 1 604 1001 ZG4 LIG . 
Q 2 GLN I 1 601 611 GLN GLN . 
R 5 ZG4 I 1 602 1000 ZG4 LIG . 
S 3 MG I 1 603 1 MG MG . 
T 4 UTP I 1 604 603 UTP UTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . T 4 173.776 169.948 158.856 1 32.92 ? PA UTP 604 I 1 
HETATM 2 O O1A UTP . . . T 4 173.685 168.86 157.815 1 32.92 ? O1A UTP 604 I 1 
HETATM 3 O O2A UTP . . . T 4 175.009 170.808 159.037 1 32.92 ? O2A UTP 604 I 1 
HETATM 4 O O3A UTP . . . T 4 173.409 169.278 160.361 1 32.92 ? O3A UTP 604 I 1 
HETATM 5 O O5' UTP . . . T 4 172.379 170.947 158.739 1 32.92 ? O5' UTP 604 I 1 
HETATM 6 P PB UTP . . . T 4 173.824 169.45 161.982 1 32.92 ? PB UTP 604 I 1 
HETATM 7 O O1B UTP . . . T 4 172.59 169.24 162.823 1 32.92 ? O1B UTP 604 I 1 
HETATM 8 O O2B UTP . . . T 4 174.727 170.664 162.088 1 32.92 ? O2B UTP 604 I 1 
HETATM 9 O O3B UTP . . . T 4 174.795 168.082 162.101 1 32.92 ? O3B UTP 604 I 1 
HETATM 10 P PG UTP . . . T 4 176.433 167.779 161.694 1 32.92 ? PG UTP 604 I 1 
HETATM 11 O O1G UTP . . . T 4 176.908 169.04 160.947 1 32.92 ? O1G UTP 604 I 1 
HETATM 12 O O2G UTP . . . T 4 176.434 166.527 160.815 1 32.92 ? O2G UTP 604 I 1 
HETATM 13 O O3G UTP . . . T 4 177.155 167.582 163.031 1 32.92 ? O3G UTP 604 I 1 
HETATM 14 C C5' UTP . . . T 4 172.262 172.079 159.587 1 32.92 ? C5' UTP 604 I 1 
HETATM 15 C C4' UTP . . . T 4 171.349 173.146 158.95 1 32.92 ? C4' UTP 604 I 1 
HETATM 16 O O4' UTP . . . T 4 172.036 173.732 157.844 1 32.92 ? O4' UTP 604 I 1 
HETATM 17 C C1' UTP . . . T 4 171.297 173.535 156.674 1 32.92 ? C1' UTP 604 I 1 
HETATM 18 C C2' UTP . . . T 4 170.354 172.338 156.912 1 32.92 ? C2' UTP 604 I 1 
HETATM 19 O O2' UTP . . . T 4 169.262 172.276 155.995 1 32.92 ? O2' UTP 604 I 1 
HETATM 20 C C3' UTP . . . T 4 170.017 172.621 158.375 1 32.92 ? C3' UTP 604 I 1 
HETATM 21 O O3' UTP . . . T 4 168.946 173.55 158.529 1 32.92 ? O3' UTP 604 I 1 
HETATM 22 N N1 UTP . . . T 4 172.16 173.552 155.51 1 32.92 ? N1 UTP 604 I 1 
HETATM 23 C C6 UTP . . . T 4 171.959 174.448 154.485 1 32.92 ? C6 UTP 604 I 1 
HETATM 24 C C2 UTP . . . T 4 173.12 172.575 155.415 1 32.92 ? C2 UTP 604 I 1 
HETATM 25 O O2 UTP . . . T 4 173.36 171.675 156.205 1 32.92 ? O2 UTP 604 I 1 
HETATM 26 N N3 UTP . . . T 4 173.832 172.596 154.273 1 32.92 ? N3 UTP 604 I 1 
HETATM 27 C C4 UTP . . . T 4 173.692 173.378 153.19 1 32.92 ? C4 UTP 604 I 1 
HETATM 28 O O4 UTP . . . T 4 174.293 173.131 152.154 1 32.92 ? O4 UTP 604 I 1 
HETATM 29 C C5 UTP . . . T 4 172.688 174.405 153.356 1 32.92 ? C5 UTP 604 I 1 
HETATM 30 H "H5'1" UTP . . . T 4 173.251 172.507 159.751 1 0 ? "H5'1" UTP 604 I 1 
HETATM 31 H "H5'2" UTP . . . T 4 171.841 171.77 160.544 1 0 ? "H5'2" UTP 604 I 1 
HETATM 32 H H4' UTP . . . T 4 171.138 173.92 159.688 1 0 ? H4' UTP 604 I 1 
HETATM 33 H H1' UTP . . . T 4 170.652 174.408 156.579 1 0 ? H1' UTP 604 I 1 
HETATM 34 H H2' UTP . . . T 4 170.927 171.413 156.849 1 0 ? H2' UTP 604 I 1 
HETATM 35 H HA UTP . . . T 4 168.939 171.373 155.941 1 0 ? HA UTP 604 I 1 
HETATM 36 H H3' UTP . . . T 4 169.756 171.686 158.871 1 0 ? H3' UTP 604 I 1 
HETATM 37 H HB UTP . . . T 4 168.248 173.15 159.052 1 0 ? HB UTP 604 I 1 
HETATM 38 H H6 UTP . . . T 4 171.196 175.205 154.59 1 0 ? H6 UTP 604 I 1 
HETATM 39 H H3 UTP . . . T 4 174.584 171.923 154.223 1 0 ? H3 UTP 604 I 1 
HETATM 40 H H5 UTP . . . T 4 172.524 175.134 152.577 1 0 ? H5 UTP 604 I 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           40 
#