data_7MIS # _model_server_result.job_id 6d0OMRxZZqEXaMgXcn9Irg _model_server_result.datetime_utc '2025-04-23 23:27:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 7MIS # _exptl.entry_id 7MIS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MIS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 439 A ASN 534 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 A OD2 ASP 447 A ASP 542 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 A OD2 ASP 447 A ASP 542 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc4 A OD2 ASP 450 A ASP 545 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 D O2B ATP . A ATP 1001 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 D O1G ATP . A ATP 1001 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc7 D O1B ATP . A ATP 1001 1_555 F MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc8 B OD1 ASP 22 B ASP 21 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc9 B OD1 ASP 24 B ASP 23 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 B OD1 ASP 26 B ASP 25 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc11 B OD2 ASP 26 B ASP 25 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc12 B O THR 28 B THR 27 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 7MIS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP A 1 1001 1001 ATP ATP . E 5 MG A 1 1002 1002 MG MG . F 5 MG A 1 1003 1003 MG MG . G 6 NA A 1 1004 1 NA NA . H 7 CA B 1 201 201 CA CA . I 8 AMP C 1 2000 2000 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 236.521 195.565 244.099 1 41.22 ? PG ATP 1001 A 1 HETATM 2 O O1G ATP . . . D 4 235.936 196.805 243.536 1 41.22 ? O1G ATP 1001 A 1 HETATM 3 O O2G ATP . . . D 4 237.983 195.714 244.504 1 41.22 ? O2G ATP 1001 A 1 HETATM 4 O O3G ATP . . . D 4 235.734 195.008 245.286 1 41.22 ? O3G ATP 1001 A 1 HETATM 5 P PB ATP . . . D 4 236.715 194.367 241.448 1 41.22 ? PB ATP 1001 A 1 HETATM 6 O O1B ATP . . . D 4 235.912 195.414 240.788 1 41.22 ? O1B ATP 1001 A 1 HETATM 7 O O2B ATP . . . D 4 238.213 194.401 241.178 1 41.22 ? O2B ATP 1001 A 1 HETATM 8 O O3B ATP . . . D 4 236.52 194.384 243.027 1 41.22 ? O3B ATP 1001 A 1 HETATM 9 P PA ATP . . . D 4 235.482 192.341 239.768 1 41.22 ? PA ATP 1001 A 1 HETATM 10 O O1A ATP . . . D 4 236.449 192.099 238.68 1 41.22 ? O1A ATP 1001 A 1 HETATM 11 O O2A ATP . . . D 4 234.36 193.32 239.427 1 41.22 ? O2A ATP 1001 A 1 HETATM 12 O O3A ATP . . . D 4 236.206 192.909 241.068 1 41.22 ? O3A ATP 1001 A 1 HETATM 13 O O5' ATP . . . D 4 234.765 190.977 240.237 1 41.22 ? O5' ATP 1001 A 1 HETATM 14 C C5' ATP . . . D 4 234.542 189.881 239.325 1 41.22 ? C5' ATP 1001 A 1 HETATM 15 C C4' ATP . . . D 4 233.064 189.59 239.251 1 41.22 ? C4' ATP 1001 A 1 HETATM 16 O O4' ATP . . . D 4 232.55 189.342 240.576 1 41.22 ? O4' ATP 1001 A 1 HETATM 17 C C3' ATP . . . D 4 232.197 190.714 238.705 1 41.22 ? C3' ATP 1001 A 1 HETATM 18 O O3' ATP . . . D 4 232.166 190.692 237.281 1 41.22 ? O3' ATP 1001 A 1 HETATM 19 C C2' ATP . . . D 4 230.83 190.391 239.31 1 41.22 ? C2' ATP 1001 A 1 HETATM 20 O O2' ATP . . . D 4 230.129 189.421 238.538 1 41.22 ? O2' ATP 1001 A 1 HETATM 21 C C1' ATP . . . D 4 231.212 189.804 240.674 1 41.22 ? C1' ATP 1001 A 1 HETATM 22 N N9 ATP . . . D 4 231.137 190.753 241.78 1 41.22 ? N9 ATP 1001 A 1 HETATM 23 C C8 ATP . . . D 4 231.964 191.819 242.013 1 41.22 ? C8 ATP 1001 A 1 HETATM 24 N N7 ATP . . . D 4 231.677 192.49 243.103 1 41.22 ? N7 ATP 1001 A 1 HETATM 25 C C5 ATP . . . D 4 230.583 191.818 243.622 1 41.22 ? C5 ATP 1001 A 1 HETATM 26 C C6 ATP . . . D 4 229.804 192.017 244.778 1 41.22 ? C6 ATP 1001 A 1 HETATM 27 N N6 ATP . . . D 4 230.04 193.024 245.624 1 41.22 ? N6 ATP 1001 A 1 HETATM 28 N N1 ATP . . . D 4 228.789 191.16 245.018 1 41.22 ? N1 ATP 1001 A 1 HETATM 29 C C2 ATP . . . D 4 228.572 190.17 244.147 1 41.22 ? C2 ATP 1001 A 1 HETATM 30 N N3 ATP . . . D 4 229.236 189.883 243.023 1 41.22 ? N3 ATP 1001 A 1 HETATM 31 C C4 ATP . . . D 4 230.235 190.746 242.817 1 41.22 ? C4 ATP 1001 A 1 HETATM 32 H "H5'1" ATP . . . D 4 235.079 188.987 239.637 1 41.22 ? "H5'1" ATP 1001 A 1 HETATM 33 H "H5'2" ATP . . . D 4 234.941 190.186 238.359 1 41.22 ? "H5'2" ATP 1001 A 1 HETATM 34 H H4' ATP . . . D 4 232.885 188.658 238.716 1 41.22 ? H4' ATP 1001 A 1 HETATM 35 H H3' ATP . . . D 4 232.568 191.712 238.934 1 41.22 ? H3' ATP 1001 A 1 HETATM 36 H H2' ATP . . . D 4 230.238 191.3 239.399 1 41.22 ? H2' ATP 1001 A 1 HETATM 37 H HO2' ATP . . . D 4 229.233 189.811 238.362 1 41.22 ? HO2' ATP 1001 A 1 HETATM 38 H H1' ATP . . . D 4 230.586 188.955 240.946 1 41.22 ? H1' ATP 1001 A 1 HETATM 39 H H8 ATP . . . D 4 232.786 192.077 241.347 1 41.22 ? H8 ATP 1001 A 1 HETATM 40 H HN61 ATP . . . D 4 230.942 193.49 245.646 1 41.22 ? HN61 ATP 1001 A 1 HETATM 41 H HN62 ATP . . . D 4 229.316 193.34 246.26 1 41.22 ? HN62 ATP 1001 A 1 HETATM 42 H H2 ATP . . . D 4 227.738 189.519 244.404 1 41.22 ? H2 ATP 1001 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 482 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #