data_7MIT # _model_server_result.job_id 2P4hNamrtCHQ6g88V2LrUw _model_server_result.datetime_utc '2024-12-21 14:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":1602}' # _entry.id 7MIT # _exptl.entry_id 7MIT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 494.004 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MIT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id CA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 N 1 NAG N 601 NAG 3 n F NAG 2 N 2 NAG N 602 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 120 B CYS 120 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 120 C CYS 120 1_555 C SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 120 D CYS 120 1_555 D SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 24 E CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 E ND2 ASN 9 E ASN 9 1_555 F C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 F O4 NAG . N NAG 1 1_555 F C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O THR 140 A THR 140 1_555 X K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc2 A O ILE 141 A ILE 141 1_555 G K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc3 A O GLY 142 A GLY 142 1_555 G K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc4 A O GLY 142 A GLY 142 1_555 I K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc5 A O PHE 143 A PHE 143 1_555 I K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc6 G K K . A K 501 1_555 B O ILE 141 B ILE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc7 G K K . A K 501 1_555 B O GLY 142 B GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc8 G K K . A K 501 1_555 C O ILE 141 C ILE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc9 G K K . A K 501 1_555 C O GLY 142 C GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc10 G K K . A K 501 1_555 D O ILE 141 D ILE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc11 G K K . A K 501 1_555 D O GLY 142 D GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc12 I K K . A K 503 1_555 B O GLY 142 B GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc13 I K K . A K 503 1_555 B O PHE 143 B PHE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc14 I K K . A K 503 1_555 C O GLY 142 C GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.207 ? metalc ? metalc15 I K K . A K 503 1_555 C O PHE 143 C PHE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc16 I K K . A K 503 1_555 D O GLY 142 D GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.245 ? metalc ? metalc17 I K K . A K 503 1_555 D O PHE 143 D PHE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc18 B O THR 140 B THR 140 1_555 X K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc19 C O THR 140 C THR 140 1_555 X K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc20 D O THR 140 D THR 140 1_555 X K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc21 D OG1 THR 140 D THR 140 1_555 X K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.236 ? # _chem_comp.formula 'C23 H28 Cl N3 O5 S' _chem_comp.formula_weight 494.004 _chem_comp.id GBM _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Glibenclamide;Glyburide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C31 GBM sing 132 n n C31 C29 GBM doub 133 n y C31 C32 GBM sing 134 n y C29 C27 GBM sing 135 n y C32 C30 GBM doub 136 n y O6 C26 GBM doub 137 n n C27 C26 GBM sing 138 n n C27 C28 GBM doub 139 n y C30 C28 GBM sing 140 n y C26 N10 GBM sing 141 n n C28 O7 GBM sing 142 n n O3 C17 GBM doub 143 n n N10 C25 GBM sing 144 n n C23 C21 GBM doub 145 n y C23 C19 GBM sing 146 n y O7 C33 GBM sing 147 n n C21 C18 GBM sing 148 n y C25 C20 GBM sing 149 n n N9 C17 GBM sing 150 n n N9 S2 GBM sing 151 n n C17 N8 GBM sing 152 n n C20 C19 GBM sing 153 n n C19 C24 GBM doub 154 n y O5 S2 GBM doub 155 n n C18 S2 GBM sing 156 n n C18 C22 GBM doub 157 n y C14 C12 GBM sing 158 n n C14 C16 GBM sing 159 n n C13 C11 GBM sing 160 n n C13 C15 GBM sing 161 n n S2 O4 GBM doub 162 n n C12 C11 GBM sing 163 n n N8 C11 GBM sing 164 n n C15 C16 GBM sing 165 n n C24 C22 GBM sing 166 n y N8 H1 GBM sing 167 n n N9 H2 GBM sing 168 n n N10 H3 GBM sing 169 n n C11 H4 GBM sing 170 n n C12 H5 GBM sing 171 n n C12 H6 GBM sing 172 n n C13 H7 GBM sing 173 n n C13 H8 GBM sing 174 n n C14 H9 GBM sing 175 n n C14 H10 GBM sing 176 n n C15 H11 GBM sing 177 n n C15 H12 GBM sing 178 n n C16 H13 GBM sing 179 n n C16 H14 GBM sing 180 n n C20 H15 GBM sing 181 n n C20 H16 GBM sing 182 n n C21 H17 GBM sing 183 n n C22 H18 GBM sing 184 n n C23 H19 GBM sing 185 n n C24 H20 GBM sing 186 n n C25 H21 GBM sing 187 n n C25 H22 GBM sing 188 n n C29 H23 GBM sing 189 n n C30 H24 GBM sing 190 n n C32 H25 GBM sing 191 n n C33 H26 GBM sing 192 n n C33 H27 GBM sing 193 n n C33 H28 GBM sing 194 n n # _atom_sites.entry_id 7MIT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 K A 1 501 2 K K . H 4 K A 1 502 3 K K . I 4 K A 1 503 4 K K . J 5 ATP A 1 504 401 ATP ATP . K 6 POV A 1 505 501 POV POV . L 7 PTY A 1 506 1611 PTY PTY . M 6 POV A 1 507 2221 POV POV . N 8 P5S A 1 508 4004 P5S P5S . O 5 ATP B 1 501 402 ATP ATP . P 5 ATP B 1 502 403 ATP ATP . Q 6 POV B 1 503 601 POV POV . R 8 P5S B 1 504 1002 P5S P5S . S 5 ATP C 1 501 404 ATP ATP . T 6 POV C 1 502 701 POV POV . U 8 P5S C 1 503 801 P5S P5S . V 6 POV C 1 504 901 POV POV . W 6 POV C 1 505 2002 POV POV . X 4 K D 1 501 1 K K . Y 8 P5S D 1 502 701 P5S P5S . Z 6 POV D 1 503 801 POV POV . AA 6 POV D 1 504 2301 POV POV . BA 5 ATP E 1 1601 405 ATP ATP . CA 9 GBM E 1 1602 2101 GBM GBM . DA 7 PTY E 1 1603 1801 PTY PTY . EA 7 PTY E 1 1604 2001 PTY PTY . FA 7 PTY E 1 1605 2201 PTY PTY . GA 7 PTY E 1 1606 2401 PTY PTY . HA 8 P5S E 1 1607 2601 P5S P5S . IA 7 PTY E 1 1608 2701 PTY PTY . JA 8 P5S E 1 1609 3001 P5S P5S . KA 7 PTY E 1 1610 3601 PTY PTY . LA 7 PTY E 1 1611 4001 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 GBM . . . CA 9 224.724 140.505 209.049 1 44.56 0 O3 GBM 1602 E 1 HETATM 2 O O4 GBM . . . CA 9 224.302 137.849 212.403 1 44.56 0 O4 GBM 1602 E 1 HETATM 3 O O5 GBM . . . CA 9 224.092 140.373 211.429 1 44.56 0 O5 GBM 1602 E 1 HETATM 4 O O6 GBM . . . CA 9 232.89 138.099 215.31 1 44.56 0 O6 GBM 1602 E 1 HETATM 5 CL CL1 GBM . . . CA 9 232.481 137.09 220.498 1 44.56 0 CL1 GBM 1602 E 1 HETATM 6 S S2 GBM . . . CA 9 224.906 138.946 211.334 1 44.56 0 S2 GBM 1602 E 1 HETATM 7 O O7 GBM . . . CA 9 228.966 137.271 215.723 1 44.56 0 O7 GBM 1602 E 1 HETATM 8 N N8 GBM . . . CA 9 224.645 139.028 207.315 1 44.56 0 N8 GBM 1602 E 1 HETATM 9 N N9 GBM . . . CA 9 224.809 138.36 209.744 1 44.56 0 N9 GBM 1602 E 1 HETATM 10 N N10 GBM . . . CA 9 230.875 138.29 214.288 1 44.56 0 N10 GBM 1602 E 1 HETATM 11 C C11 GBM . . . CA 9 224.56 140.117 206.347 1 44.56 0 C11 GBM 1602 E 1 HETATM 12 C C12 GBM . . . CA 9 223.777 139.626 205.121 1 44.56 0 C12 GBM 1602 E 1 HETATM 13 C C13 GBM . . . CA 9 225.969 140.64 206.07 1 44.56 0 C13 GBM 1602 E 1 HETATM 14 C C14 GBM . . . CA 9 224.571 138.926 204.021 1 44.56 0 C14 GBM 1602 E 1 HETATM 15 C C15 GBM . . . CA 9 226.32 140.61 204.594 1 44.56 0 C15 GBM 1602 E 1 HETATM 16 C C16 GBM . . . CA 9 226.066 139.212 204.054 1 44.56 0 C16 GBM 1602 E 1 HETATM 17 C C17 GBM . . . CA 9 224.725 139.371 208.719 1 44.56 0 C17 GBM 1602 E 1 HETATM 18 C C18 GBM . . . CA 9 226.652 139.251 211.693 1 44.56 0 C18 GBM 1602 E 1 HETATM 19 C C19 GBM . . . CA 9 229.309 139.716 212.231 1 44.56 0 C19 GBM 1602 E 1 HETATM 20 C C20 GBM . . . CA 9 230.778 139.972 212.54 1 44.56 0 C20 GBM 1602 E 1 HETATM 21 C C21 GBM . . . CA 9 227.554 139.354 210.658 1 44.56 0 C21 GBM 1602 E 1 HETATM 22 C C22 GBM . . . CA 9 227.069 139.378 212.999 1 44.56 0 C22 GBM 1602 E 1 HETATM 23 C C23 GBM . . . CA 9 228.891 139.586 210.925 1 44.56 0 C23 GBM 1602 E 1 HETATM 24 C C24 GBM . . . CA 9 228.403 139.616 213.26 1 44.56 0 C24 GBM 1602 E 1 HETATM 25 C C25 GBM . . . CA 9 231.465 138.705 213.034 1 44.56 0 C25 GBM 1602 E 1 HETATM 26 C C26 GBM . . . CA 9 231.721 138 215.417 1 44.56 0 C26 GBM 1602 E 1 HETATM 27 C C27 GBM . . . CA 9 231.119 137.569 216.744 1 44.56 0 C27 GBM 1602 E 1 HETATM 28 C C28 GBM . . . CA 9 229.787 137.228 216.845 1 44.56 0 C28 GBM 1602 E 1 HETATM 29 C C29 GBM . . . CA 9 231.933 137.528 217.851 1 44.56 0 C29 GBM 1602 E 1 HETATM 30 C C30 GBM . . . CA 9 229.267 136.843 218.061 1 44.56 0 C30 GBM 1602 E 1 HETATM 31 C C31 GBM . . . CA 9 231.419 137.141 219.068 1 44.56 0 C31 GBM 1602 E 1 HETATM 32 C C32 GBM . . . CA 9 230.084 136.802 219.173 1 44.56 0 C32 GBM 1602 E 1 HETATM 33 C C33 GBM . . . CA 9 227.628 137.548 216.01 1 44.56 0 C33 GBM 1602 E 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 514 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #